Rmu_sc0021186.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021186.1
OG0000214
Physical Location & Seq
Reverse (-)
2 .. 795
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021186.1_g000001.1.cds

Sequence Viewer

Length: 794 bp
atgcgatcctcaagatggaataatgattcattaattacgcttcccatccgccgtcccatagcggctcttcggcaggtgcctggtgattttagcagttggggaccaaggaagaaagtgggcttctggcctaccgtcactcccgaggaaaaggtttggtatcaggaggtccgagcgagagatttggcccgatgggatgcggtgggtatcacccaaaccatcgatctatgcttctgtcttccccataatactagcgctgcaccgctagccgccgctctttgcttctggaacacctccagcaatacattcgatttctggtttgggcaaatgagcataactctgctggatgttcttaccatcacggggttgcccattgactttgacccctatgtgcatggtcagtttgatggcattcaattttctttgagaatggatatgactggtcgagggcatcacagcaaatcctacccattctggcgtgactattaccgcacccagcgtgaccatacagaaggtatcgcattcctggaattctggttttgcaaatttatcttttgcacttcttccaacaaacctactgggccctggaattctctggccactgctctctacaatggtatttgcgttggccttgggcaacctgtattgggtgcgttatatcgctccctttatagagccgtaatgtgcccgtttgataccgacattagtggccccttttggatccttgccttttggttgcagatttatttcactctcttccgtcgcggcgatattccaaaggaacctccagttgattc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

265

Amino Acids

30.48

Weight (kDa)

8.15

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 64
Acc36I ACCTGC 1 cut(s) 64
AccB1I GGYRCC 1 cut(s) 76
AccBSI CCGCTC 1 cut(s) 272
AccII CGCG 1 cut(s) 762
AciI CCGC 8 cut(s) 49, 62, 197, 260, 267, 270, 487, 762
AclWI GGATC 2 cut(s) 712, 725
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 3 cut(s) 527, 542, 586
AfeI AGCGCT 1 cut(s) 253
AfiI CCNNNNNNNGG 3 cut(s) 15, 360, 644
AgsI TTSAA 1 cut(s) 413
AjnI CCWGG 3 cut(s) 79, 522, 581
AlwI GGATC 2 cut(s) 712, 725
Ama87I CYCGRG 1 cut(s) 140
Aor51HI AGCGCT 1 cut(s) 253
AoxI GGCC 6 cut(s) 125, 183, 578, 594, 625, 706
ApaI GGGCCC 1 cut(s) 582
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 3 cut(s) 527, 542, 586
AseI ATTAAT 1 cut(s) 32
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 6 cut(s) 101, 166, 184, 578, 579, 707
AsuHPI GGTGA 2 cut(s) 95, 199
AsuNHI GCTAGC 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 2 cut(s) 101, 166
BaeGI GKGCMC 2 cut(s) 582, 686
BalI TGGCCA 1 cut(s) 596
BamHI GGATCC 1 cut(s) 717
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 582
BbsI GAAGAC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 241
BccI CCATC 6 cut(s) 9, 53, 183, 224, 362, 398
BceAI ACGGC 2 cut(s) 36, 659
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 3 cut(s) 81, 524, 583
BfaI CTAG 2 cut(s) 249, 263
BfoI RGCGCY 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 64
BisI GCNGC 5 cut(s) 63, 255, 267, 270, 763
BlsI GCNGC 5 cut(s) 64, 256, 268, 271, 764
Bme1390I CCNGG 3 cut(s) 81, 524, 583
Bme18I GGWCC 2 cut(s) 101, 166
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 6 cut(s) 101, 166, 184, 578, 579, 707
BmiI GGNNCC 6 cut(s) 78, 102, 580, 709, 719, 780
BmrFI CCNGG 3 cut(s) 81, 524, 583
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 2 cut(s) 184, 457
BmtI GCTAGC 1 cut(s) 266
BmuI ACTGGG 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpmI CTGGAG 2 cut(s) 277, 768
Bsa29I ATCGAT 1 cut(s) 219
BsaJI CCNNGG 4 cut(s) 104, 141, 581, 628
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 360, 644
Bse1I ACTGG 3 cut(s) 442, 580, 785
BseBI CCWGG 3 cut(s) 81, 524, 583
BseCI ATCGAT 1 cut(s) 219
BseDI CCNNGG 4 cut(s) 104, 141, 581, 628
BseGI GGATG 3 cut(s) 45, 199, 349
BseLI CCNNNNNNNGG 3 cut(s) 15, 360, 644
BseNI ACTGG 3 cut(s) 442, 580, 785
BseSI GKGCMC 2 cut(s) 582, 686
BseXI GCAGC 1 cut(s) 241
BseYI CCCAGC 1 cut(s) 492
BsgI GTGCAG 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 762
BshFI GGCC 6 cut(s) 127, 185, 580, 596, 627, 708
BshNI GGYRCC 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 140
BslFI GGGAC 2 cut(s) 39, 114
BslI CCNNNNNNNGG 3 cut(s) 15, 360, 644
BsmFI GGGAC 2 cut(s) 39, 114
BsmI GAATGC 2 cut(s) 408, 518
BsnI GGCC 6 cut(s) 127, 185, 580, 596, 627, 708
BsoBI CYCGRG 1 cut(s) 140
Bsp120I GGGCCC 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 582, 686
Bsp143I GATC 3 cut(s) 5, 220, 717
BspACI CCGC 8 cut(s) 49, 62, 197, 260, 267, 270, 487, 762
BspANI GGCC 6 cut(s) 127, 185, 580, 596, 627, 708
BspDI ATCGAT 1 cut(s) 219
BspFNI CGCG 1 cut(s) 762
BspLI GGNNCC 6 cut(s) 78, 102, 580, 709, 719, 780
BspMI ACCTGC 1 cut(s) 64
BspOI GCTAGC 1 cut(s) 266
BspPI GGATC 2 cut(s) 712, 725
BspQI GCTCTTC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 272
BsrI ACTGG 3 cut(s) 442, 580, 785
BssECI CCNNGG 4 cut(s) 104, 141, 581, 628
BssMI GATC 3 cut(s) 5, 220, 717
BssT1I CCWWGG 2 cut(s) 104, 628
Bst2UI CCWGG 3 cut(s) 81, 524, 583
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 2 cut(s) 72, 758
BstC8I GCNNGC 1 cut(s) 264
BstF5I GGATG 3 cut(s) 45, 199, 349
BstFNI CGCG 1 cut(s) 762
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 3 cut(s) 8, 223, 720
BstMBI GATC 3 cut(s) 5, 220, 717
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 3 cut(s) 81, 524, 583
BstSCI CCNGG 3 cut(s) 79, 522, 581
BstSLI GKGCMC 2 cut(s) 582, 686
BstUI CGCG 1 cut(s) 762
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 717
BstYI RGATCY 1 cut(s) 717
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 6 cut(s) 127, 185, 580, 596, 627, 708
BsuTUI ATCGAT 1 cut(s) 219
BtsCI GGATG 3 cut(s) 45, 199, 349
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 1 cut(s) 597
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 264
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 6 cut(s) 101, 166, 184, 578, 579, 707
ClaI ATCGAT 1 cut(s) 219
CviAII CATG 1 cut(s) 392
DpnI GATC 3 cut(s) 7, 222, 719
DpnII GATC 3 cut(s) 5, 220, 717
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 2 cut(s) 72, 758
EarI CTCTTC 2 cut(s) 72, 758
EciI GGCGGA 1 cut(s) 38
Eco130I CCWWGG 2 cut(s) 104, 628
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 2 cut(s) 101, 166
Eco47III AGCGCT 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 579
EcoRI GAATTC 2 cut(s) 527, 586
EcoRII CCWGG 3 cut(s) 79, 522, 581
EcoT14I CCWWGG 2 cut(s) 104, 628
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 2 cut(s) 104, 628
FaeI CATG 1 cut(s) 395
FaqI GGGAC 2 cut(s) 39, 114
FatI CATG 1 cut(s) 391
Fnu4HI GCNGC 5 cut(s) 63, 255, 267, 270, 763
FokI GGATG 3 cut(s) 32, 206, 356
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 5 cut(s) 63, 255, 267, 270, 763
FspBI CTAG 2 cut(s) 249, 263
GlaI GCGC 1 cut(s) 253
GluI GCNGC 5 cut(s) 63, 255, 267, 270, 763
GsaI CCCAGC 1 cut(s) 496
GsuI CTGGAG 2 cut(s) 277, 768
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 6 cut(s) 127, 185, 580, 596, 627, 708
HhaI GCGC 1 cut(s) 254
Hin1II CATG 1 cut(s) 395
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 2 cut(s) 26, 791
HphI GGTGA 2 cut(s) 95, 199
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 4 cut(s) 12, 140, 161, 283
Hpy99I CGWCG 1 cut(s) 762
HpyAV CCTTC 1 cut(s) 503
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 5 cut(s) 257, 391, 540, 555, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
Hsp92II CATG 1 cut(s) 395
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 3 cut(s) 5, 220, 717
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 665
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 2 cut(s) 184, 457
MaeI CTAG 2 cut(s) 249, 263
MaeIII GTNAC 3 cut(s) 133, 476, 497
MalI GATC 3 cut(s) 7, 222, 719
MbiI CCGCTC 1 cut(s) 272
MboI GATC 3 cut(s) 5, 220, 717
MboII GAAGA 5 cut(s) 59, 121, 227, 552, 745
MflI RGATCY 1 cut(s) 717
MhlI GDGCHC 2 cut(s) 582, 686
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 5 cut(s) 33, 413, 527, 542, 586
MluNI TGGCCA 1 cut(s) 596
MmeI TCCRAC 1 cut(s) 588
MnlI CCTC 6 cut(s) 19, 136, 157, 301, 437, 792
Mox20I TGGCCA 1 cut(s) 596
MscI TGGCCA 1 cut(s) 596
MseI TTAA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 596
MspR9I CCNGG 3 cut(s) 81, 524, 583
Mva1269I GAATGC 2 cut(s) 408, 518
MvaI CCWGG 3 cut(s) 81, 524, 583
MvnI CGCG 1 cut(s) 762
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 3 cut(s) 5, 220, 717
NheI GCTAGC 1 cut(s) 262
NlaIII CATG 1 cut(s) 395
NlaIV GGNNCC 6 cut(s) 78, 102, 580, 709, 719, 780
NmuCI GTSAC 3 cut(s) 133, 476, 497
PaqCI CACCTGC 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 72
PctI GAATGC 2 cut(s) 408, 518
PfeI GAWTC 2 cut(s) 26, 791
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 5 cut(s) 64, 256, 268, 271, 764
PshBI ATTAAT 1 cut(s) 32
Psp6I CCWGG 3 cut(s) 79, 522, 581
PspFI CCCAGC 1 cut(s) 492
PspGI CCWGG 3 cut(s) 79, 522, 581
PspN4I GGNNCC 6 cut(s) 78, 102, 580, 709, 719, 780
PspOMI GGGCCC 1 cut(s) 578
PspPI GGNCC 6 cut(s) 101, 166, 184, 578, 579, 707
PsuI RGATCY 1 cut(s) 717
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 5 cut(s) 63, 255, 267, 270, 763
Sau3AI GATC 3 cut(s) 5, 220, 717
Sau96I GGNCC 6 cut(s) 101, 166, 184, 578, 579, 707
ScrFI CCNGG 3 cut(s) 81, 524, 583
SduI GDGCHC 2 cut(s) 582, 686
SetI ASST 8 cut(s) 78, 153, 168, 293, 514, 574, 640, 784
SfaNI GCATC 2 cut(s) 184, 457
SinI GGWCC 2 cut(s) 101, 166
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 5 cut(s) 33, 413, 527, 542, 586
SsiI CCGC 8 cut(s) 49, 62, 197, 260, 267, 270, 487, 762
SspMI CTAG 2 cut(s) 249, 263
StyD4I CCNGG 3 cut(s) 79, 522, 581
StyI CCWWGG 2 cut(s) 104, 628
TaaI ACNGT 1 cut(s) 133
TaqI TCGA 3 cut(s) 219, 306, 442
TasI AATT 5 cut(s) 33, 413, 527, 542, 586
TauI GCSGC 4 cut(s) 65, 269, 272, 765
TfiI GAWTC 2 cut(s) 26, 791
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 604
TseFI GTSAC 3 cut(s) 133, 476, 497
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 3 cut(s) 133, 476, 497
TspDTI ATGAA 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 1 cut(s) 604
VpaK11BI GGWCC 2 cut(s) 101, 166
VspI ATTAAT 1 cut(s) 32
XapI RAATTY 3 cut(s) 527, 542, 586
XspI CTAG 2 cut(s) 249, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.