Rmu_ssc0000309.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000309.1
OG0000214
Physical Location & Seq
Forward (+)
78562 .. 78945
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000309.1_g000025.1.cds

Sequence Viewer

Length: 384 bp
atgccggatccaaaaatagttctttcttggctattccctcctccccttgatgatggctttctgcccagtggactggatcatagagaaagagccctattggccttttgtcgcgccatctcctgcttggatattcgtcttgccactgaccatgtgagctacgagctttatgctcctaaccactttgctcgccaatttgggttggcccaattggtaccctggcctctggttgattctgccaattactatacctcttggcggagactagcccgtcctgggtctacctcctttcagagtcagtttactttgatagtgattccccattgggtcagagcgttgtaccccctcaacgatgtcgacgatgactatgctgactggtggaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.73

Weight (kDa)

5.68

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 267
Acc65I GGTACC 1 cut(s) 211
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 2 cut(s) 278, 354
AccII CGCG 1 cut(s) 111
AciI CCGC 1 cut(s) 256
AclWI GGATC 3 cut(s) 2, 15, 84
AfaI GTAC 2 cut(s) 213, 338
AfiI CCNNNNNNNGG 2 cut(s) 255, 273
AjnI CCWGG 2 cut(s) 215, 271
AluBI AGCT 2 cut(s) 156, 163
AluI AGCT 2 cut(s) 156, 163
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 3 cut(s) 2, 15, 84
AoxI GGCC 3 cut(s) 99, 201, 218
Asp718I GGTACC 1 cut(s) 211
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 202
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 94
BccI CCATC 2 cut(s) 47, 122
BcgI CGANNNNNNTGC 4 cut(s) 149, 183, 347, 381
BciT130I CCWGG 2 cut(s) 217, 273
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 1 cut(s) 263
BglI GCCNNNNNGGC 1 cut(s) 98
Bme1390I CCNGG 2 cut(s) 217, 273
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 2 cut(s) 9, 213
BmrFI CCNGG 2 cut(s) 217, 273
BmrI ACTGGG 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 215, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 273
Bse1I ACTGG 3 cut(s) 66, 78, 377
BseBI CCWGG 2 cut(s) 217, 273
BseDI CCNNGG 2 cut(s) 215, 272
BseLI CCNNNNNNNGG 2 cut(s) 255, 273
BseNI ACTGG 3 cut(s) 66, 78, 377
BseRI GAGGAG 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 3 cut(s) 101, 203, 220
BshNI GGYRCC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 255, 273
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 3 cut(s) 101, 203, 220
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 7, 76
BspACI CCGC 1 cut(s) 256
BspANI GGCC 3 cut(s) 101, 203, 220
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 9, 213
BspPI GGATC 3 cut(s) 2, 15, 84
BspT107I GGYRCC 1 cut(s) 211
BsrI ACTGG 3 cut(s) 66, 78, 377
BssECI CCNNGG 2 cut(s) 215, 272
BssMI GATC 2 cut(s) 7, 76
Bst2UI CCWGG 2 cut(s) 217, 273
BstC8I GCNNGC 1 cut(s) 187
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 2 cut(s) 10, 79
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 2 cut(s) 7, 76
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 2 cut(s) 217, 273
BstSCI CCNGG 2 cut(s) 215, 271
BstUI CGCG 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 3 cut(s) 101, 203, 220
BtsIMutI CAGTG 2 cut(s) 73, 141
Cac8I GCNNGC 1 cut(s) 187
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 212, 337
CviAII CATG 1 cut(s) 149
CviJI RGCY 9 cut(s) 31, 57, 92, 101, 156, 163, 203, 220, 266
CviKI_1 RGCY 9 cut(s) 31, 57, 92, 101, 156, 163, 203, 220, 266
CviQI GTAC 2 cut(s) 212, 337
DpnI GATC 2 cut(s) 9, 78
DpnII GATC 2 cut(s) 7, 76
DrdI GACNNNNNNGTC 1 cut(s) 267
DseDI GACNNNNNNGTC 1 cut(s) 267
EciI GGCGGA 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 94
EcoRII CCWGG 2 cut(s) 215, 271
EcoT38I GRGCYC 1 cut(s) 94
FaeI CATG 1 cut(s) 152
FaiI YATR 5 cut(s) 81, 150, 168, 246, 366
FatI CATG 1 cut(s) 148
FblI GTMKAC 2 cut(s) 278, 354
FriOI GRGCYC 1 cut(s) 94
FspBI CTAG 1 cut(s) 263
GlaI GCGC 1 cut(s) 112
HaeIII GGCC 3 cut(s) 101, 203, 220
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 3 cut(s) 230, 292, 313
HpaII CCGG 1 cut(s) 5
Hpy166II GTNNAC 4 cut(s) 71, 279, 300, 355
Hpy188I TCNGA 2 cut(s) 291, 329
Hpy8I GTNNAC 4 cut(s) 71, 279, 300, 355
Hpy99I CGWCG 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 111
KpnI GGTACC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 7, 76
LmnI GCTCC 1 cut(s) 175
MaeI CTAG 1 cut(s) 263
MalI GATC 2 cut(s) 9, 78
MboI GATC 2 cut(s) 7, 76
MfeI CAATTG 1 cut(s) 206
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 3 cut(s) 191, 206, 238
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 6 cut(s) 48, 51, 231, 259, 292, 353
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 217, 273
MunI CAATTG 1 cut(s) 206
MvaI CCWGG 2 cut(s) 217, 273
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 2 cut(s) 7, 76
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 2 cut(s) 9, 213
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PfeI GAWTC 2 cut(s) 230, 313
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 215, 271
PspGI CCWGG 2 cut(s) 215, 271
PspN4I GGNNCC 2 cut(s) 9, 213
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 2 cut(s) 213, 338
RsaNI GTAC 2 cut(s) 212, 337
SalI GTCGAC 1 cut(s) 353
Sau3AI GATC 2 cut(s) 7, 76
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 217, 273
SduI GDGCHC 1 cut(s) 94
SetI ASST 4 cut(s) 158, 165, 251, 284
Sse9I AATT 3 cut(s) 191, 206, 238
SsiI CCGC 1 cut(s) 256
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 215, 271
TaqI TCGA 1 cut(s) 354
TasI AATT 3 cut(s) 191, 206, 238
TfiI GAWTC 2 cut(s) 230, 313
TscAI CASTG 2 cut(s) 73, 148
TspRI CASTG 2 cut(s) 73, 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmiI GTMKAC 2 cut(s) 278, 354
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.