Rroxscaffold_2G00142810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000214
Physical Location & Seq
Forward (+)
80895021 .. 80897453
2433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142810.1

Sequence Viewer

Length: 735 bp
ATGAGCATCACTCTGCTAGATGTTCTTACCATTACGGGGTTGCCCATTGACTTTGACCCCTATGTGCATGGTCGGTTTGATGGCATTCAATTTTCTTTGAGAATGGATATGGCTGGTCGAGGGCATCACAGCAGATCCTACCCATTACGGCGCGATTATTACTGCACCCGGCTTGACCATACGGGAGCGCTATACCCCCTCAACGATGTCGATGATAACTATGCTGATTGGTGGAAAGAAGTGTCGGTGAACTATTGGGACCTGCCACATGACGAACTCTTCGTCCCGATCTTTCGTGGCATGAGTAGTCTCGGTCGGGAGAACCGCAAGATTCTTGAGCGCTTCTCCAACCCCGCAGCACAACTCCCGCGACCTATTCTACCTTCTCGCTCATCGCGTCCGGGGATACAAATCCACAAGCCTAGGGCAACGCGGCGAGTTGAGTTTCTAGATTCTTCTGCGGTTGAAGGGACAGACCAACCTGTTGAAGATGAAGAAACCGAGGAAGTTGTCCACCCTTTTGCATTAGTGGATCGTGATCATGTGGCGCCTCCACCGCCTCCTCCTCCTACCGCATTCGAGAGATTGATGAGGGTGTTGGAGGTAACTCCTCCTTCTGCTGTGGATGAGGCTAAGATGGTGCTTCACGAACATCCGGGTCCTCGGGTATTGGAGACCGACATCCTCCCGCGAGTCTTGGAAGCTCTAAGGTATCTTCGCCAGAGAATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

28.12

Weight (kDa)

5.68

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 547
AccII CGCG 5 cut(s) 153, 370, 397, 433, 691
AciI CCGC 8 cut(s) 325, 354, 368, 433, 461, 557, 573, 689
AclWI GGATC 2 cut(s) 129, 540
AcyI GRCGYC 1 cut(s) 548
AfeI AGCGCT 2 cut(s) 189, 341
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 3 cut(s) 89, 467, 488
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 1 cut(s) 704
AluI AGCT 1 cut(s) 704
Alw26I GTCTC 2 cut(s) 314, 668
AlwI GGATC 2 cut(s) 129, 540
Ama87I CYCGRG 1 cut(s) 663
Aor51HI AGCGCT 2 cut(s) 189, 341
ApeKI GCWGC 1 cut(s) 356
ArsI GACNNNNNNTTYG 4 cut(s) 263, 267, 295, 299
AspA2I CCTAGG 1 cut(s) 422
AspLEI GCGC 4 cut(s) 153, 190, 342, 550
AspS9I GGNCC 2 cut(s) 259, 659
AsuC2I CCSGG 3 cut(s) 169, 402, 657
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 663
AvaII GGWCC 2 cut(s) 259, 659
AvrII CCTAGG 1 cut(s) 422
BanI GGYRCC 1 cut(s) 547
BbvI GCAGC 1 cut(s) 368
BccI CCATC 2 cut(s) 74, 631
BceAI ACGGC 1 cut(s) 164
BciVI GTATCC 1 cut(s) 399
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 3 cut(s) 169, 402, 657
BcoDI GTCTC 2 cut(s) 314, 668
BfaI CTAG 3 cut(s) 17, 423, 449
BfoI RGCGCY 3 cut(s) 191, 343, 551
BfuAI ACCTGC 1 cut(s) 270
BfuI GTATCC 1 cut(s) 399
BisI GCNGC 2 cut(s) 357, 434
BlnI CCTAGG 1 cut(s) 422
BlsI GCNGC 2 cut(s) 358, 435
Bme1390I CCNGG 3 cut(s) 169, 402, 657
Bme18I GGWCC 2 cut(s) 259, 659
BmeT110I CYCGRG 1 cut(s) 663
BmgT120I GGNCC 2 cut(s) 259, 659
BmiI GGNNCC 3 cut(s) 260, 549, 660
BmrFI CCNGG 3 cut(s) 169, 402, 657
BmsI GCATC 2 cut(s) 15, 133
BplI GAGNNNNNCTC 3 cut(s) 27, 329, 361
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 3 cut(s) 169, 402, 657
BsaBI GATNNNNATC 2 cut(s) 410, 537
BsaHI GRCGYC 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 668
BsaJI CCNNGG 4 cut(s) 401, 422, 501, 662
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse8I GATNNNNATC 2 cut(s) 410, 537
BseDI CCNNGG 4 cut(s) 401, 422, 501, 662
BseGI GGATG 3 cut(s) 631, 652, 681
BseJI GATNNNNATC 2 cut(s) 410, 537
BseLI CCNNNNNNNGG 1 cut(s) 36
BseRI GAGGAG 3 cut(s) 552, 555, 600
BseXI GCAGC 1 cut(s) 368
BsgI GTGCAG 1 cut(s) 148
Bsh1236I CGCG 5 cut(s) 153, 370, 397, 433, 691
Bsh1285I CGRYCG 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 547
BsiEI CGRYCG 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 663
BsiSI CCGG 3 cut(s) 169, 401, 656
BslFI GGGAC 3 cut(s) 269, 272, 484
BslI CCNNNNNNNGG 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 314, 668
BsmFI GGGAC 3 cut(s) 269, 272, 484
BsmI GAATGC 2 cut(s) 84, 575
Bso31I GGTCTC 1 cut(s) 668
BsoBI CYCGRG 1 cut(s) 663
Bsp143I GATC 4 cut(s) 134, 288, 532, 538
BspACI CCGC 8 cut(s) 325, 354, 368, 433, 461, 557, 573, 689
BspFNI CGCG 5 cut(s) 153, 370, 397, 433, 691
BspLI GGNNCC 3 cut(s) 260, 549, 660
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 2 cut(s) 129, 540
BspT107I GGYRCC 1 cut(s) 547
BspTNI GGTCTC 1 cut(s) 668
BssECI CCNNGG 4 cut(s) 401, 422, 501, 662
BssMI GATC 4 cut(s) 134, 288, 532, 538
BssNI GRCGYC 1 cut(s) 548
BssT1I CCWWGG 1 cut(s) 422
Bst6I CTCTTC 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 548
BstDEI CTNAG 2 cut(s) 633, 707
BstF5I GGATG 3 cut(s) 631, 652, 681
BstFNI CGCG 5 cut(s) 153, 370, 397, 433, 691
BstH2I RGCGCY 3 cut(s) 191, 343, 551
BstHHI GCGC 4 cut(s) 153, 190, 342, 550
BstKTI GATC 4 cut(s) 137, 291, 535, 541
BstMAI GTCTC 2 cut(s) 314, 668
BstMBI GATC 4 cut(s) 134, 288, 532, 538
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstSCI CCNGG 3 cut(s) 167, 400, 655
BstUI CGCG 5 cut(s) 153, 370, 397, 433, 691
BstV1I GCAGC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuI GTATCC 1 cut(s) 399
BtgZI GCGATG 1 cut(s) 378
BtsCI GGATG 3 cut(s) 631, 652, 681
BveI ACCTGC 1 cut(s) 270
CfoI GCGC 4 cut(s) 153, 190, 342, 550
Cfr13I GGNCC 2 cut(s) 259, 659
CseI GACGC 1 cut(s) 386
CviAII CATG 4 cut(s) 68, 269, 301, 542
CviJI RGCY 5 cut(s) 113, 172, 421, 632, 704
CviKI_1 RGCY 5 cut(s) 113, 172, 421, 632, 704
DdeI CTNAG 2 cut(s) 633, 707
DinI GGCGCC 1 cut(s) 549
DpnI GATC 4 cut(s) 136, 290, 534, 540
DpnII GATC 4 cut(s) 134, 288, 532, 538
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 422
Eco31I GGTCTC 1 cut(s) 668
Eco47I GGWCC 2 cut(s) 259, 659
Eco47III AGCGCT 2 cut(s) 189, 341
Eco88I CYCGRG 1 cut(s) 663
EcoO109I RGGNCCY 2 cut(s) 259, 659
EcoT14I CCWWGG 1 cut(s) 422
EgeI GGCGCC 1 cut(s) 549
EheI GGCGCC 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 422
FaeI CATG 4 cut(s) 71, 272, 304, 545
FaiI YATR 9 cut(s) 63, 69, 110, 180, 193, 222, 270, 302, 543
FaqI GGGAC 3 cut(s) 269, 272, 484
FatI CATG 4 cut(s) 67, 268, 300, 541
FauI CCCGC 3 cut(s) 361, 375, 696
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 2 cut(s) 357, 434
FokI GGATG 3 cut(s) 638, 639, 668
Fsp4HI GCNGC 2 cut(s) 357, 434
FspBI CTAG 3 cut(s) 17, 423, 449
GlaI GCGC 4 cut(s) 152, 189, 341, 549
GluI GCNGC 2 cut(s) 357, 434
HaeII RGCGCY 3 cut(s) 191, 343, 551
HapII CCGG 3 cut(s) 169, 401, 656
HgaI GACGC 1 cut(s) 386
HhaI GCGC 4 cut(s) 153, 190, 342, 550
Hin1I GRCGYC 1 cut(s) 548
Hin1II CATG 4 cut(s) 71, 272, 304, 545
Hin6I GCGC 4 cut(s) 151, 188, 340, 548
HinP1I GCGC 4 cut(s) 151, 188, 340, 548
HinfI GANTC 3 cut(s) 331, 452, 693
HpaII CCGG 3 cut(s) 169, 401, 656
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 250, 514
Hpy188III TCNNGA 7 cut(s) 286, 317, 335, 449, 536, 580, 647
Hpy8I GTNNAC 2 cut(s) 250, 514
HpyAV CCTTC 3 cut(s) 393, 461, 624
HpyCH4V TGCA 3 cut(s) 67, 165, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpyF3I CTNAG 2 cut(s) 633, 707
Hsp92I GRCGYC 1 cut(s) 548
Hsp92II CATG 4 cut(s) 71, 272, 304, 545
HspAI GCGC 4 cut(s) 151, 188, 340, 548
KasI GGCGCC 1 cut(s) 547
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 4 cut(s) 134, 288, 532, 538
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 6 cut(s) 99, 182, 275, 414, 495, 669
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 2 cut(s) 15, 133
MaeI CTAG 3 cut(s) 17, 423, 449
MaeIII GTNAC 1 cut(s) 604
MalI GATC 4 cut(s) 136, 290, 534, 540
MboI GATC 4 cut(s) 134, 288, 532, 538
MboII GAAGA 5 cut(s) 271, 447, 500, 506, 707
MflI RGATCY 1 cut(s) 134
MluCI AATT 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 548
MlyI GAGTC 1 cut(s) 702
MmeI TCCRAC 2 cut(s) 372, 579
MspI CCGG 3 cut(s) 169, 401, 656
MspR9I CCNGG 3 cut(s) 169, 402, 657
Mva1269I GAATGC 2 cut(s) 84, 575
MvnI CGCG 5 cut(s) 153, 370, 397, 433, 691
MwoI GCNNNNNNNGC 1 cut(s) 556
NarI GGCGCC 1 cut(s) 548
NciI CCSGG 3 cut(s) 169, 402, 657
NdeII GATC 4 cut(s) 134, 288, 532, 538
NlaIII CATG 4 cut(s) 71, 272, 304, 545
NlaIV GGNNCC 3 cut(s) 260, 549, 660
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 394
PctI GAATGC 2 cut(s) 84, 575
PfeI GAWTC 2 cut(s) 331, 452
PkrI GCNGC 2 cut(s) 358, 435
PleI GAGTC 1 cut(s) 701
PluTI GGCGCC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 701
PpuMI RGGWCCY 2 cut(s) 259, 659
Psp5II RGGWCCY 2 cut(s) 259, 659
PspN4I GGNNCC 3 cut(s) 260, 549, 660
PspPI GGNCC 2 cut(s) 259, 659
PspPPI RGGWCCY 2 cut(s) 259, 659
PsuI RGATCY 1 cut(s) 134
SatI GCNGC 2 cut(s) 357, 434
Sau3AI GATC 4 cut(s) 134, 288, 532, 538
Sau96I GGNCC 2 cut(s) 259, 659
SchI GAGTC 1 cut(s) 702
ScrFI CCNGG 3 cut(s) 169, 402, 657
SetI ASST 7 cut(s) 264, 376, 385, 484, 606, 706, 713
SfaNI GCATC 2 cut(s) 15, 133
SfoI GGCGCC 1 cut(s) 549
SinI GGWCC 2 cut(s) 259, 659
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 1 cut(s) 89
SsiI CCGC 8 cut(s) 325, 354, 368, 433, 461, 557, 573, 689
SspDI GGCGCC 1 cut(s) 547
SspMI CTAG 3 cut(s) 17, 423, 449
StyD4I CCNGG 3 cut(s) 167, 400, 655
StyI CCWWGG 1 cut(s) 422
TaqI TCGA 3 cut(s) 118, 210, 579
TaqII GACCGA 2 cut(s) 302, 692
TasI AATT 1 cut(s) 89
TauI GCSGC 1 cut(s) 436
TfiI GAWTC 2 cut(s) 331, 452
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 507
VpaK11BI GGWCC 2 cut(s) 259, 659
XbaI TCTAGA 1 cut(s) 448
XmaJI CCTAGG 1 cut(s) 422
XspI CTAG 3 cut(s) 17, 423, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.