Rmu_sc0000935.1_g000066

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000935.1
OG0000214
Physical Location & Seq
Reverse (-)
308240 .. 309454
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000935.1_g000066.1.cds

Sequence Viewer

Length: 711 bp
atggcccgccgacgtcaatcggtcgcgaacgcccaggctcgggatgctcaagaggctttgaatagtgtctctcgagaaatggacatctcccgcgatattttaaatgaacgatccatccgccagcgggaactacaaatccaaaggtctgacttcagacttcaaatcgagggcctccaagcccatttagcctttgttgagaatgcgattgttgcagaagaagctcaactcgatgagcctttgactgcttctgaagaaatgggccgcaacctggcccgtatcagagatagggccactcaggcggaagctggtgctattgaggcgaaacgccacgtggaggaactttattggtttagaaacacgaaggggctccgagtgtgggatccacgatcatgcgagatcatctttattaggatcccgcacttggagcaaatcggggaagggagggaagccaagttgaggttcgtctttcctcctctgtttccttccttctggacccggcctgtgttgtgccctccagatggaagaggctttggaatgggttcaagctacagaatggctgttcctgtacttcacgtccagctaatggtggttaccaaggctagagggggtgcagagactcaagctgatattcggttccttcactctctgcccctccaggagataatggcgcggctcaacccggcgttggattccatagcttcttccaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.84

Weight (kDa)

7.88

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 16
AccB7I CCANNNNNTGG 1 cut(s) 583
AccII CGCG 3 cut(s) 26, 93, 670
AciI CCGC 8 cut(s) 7, 91, 118, 124, 262, 299, 416, 670
AclWI GGATC 5 cut(s) 105, 374, 387, 406, 419
AcuI CTGAAG 2 cut(s) 136, 270
AcvI CACGTG 1 cut(s) 331
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 1 cut(s) 567
AgsI TTSAA 3 cut(s) 61, 161, 543
AjiI CACGTC 1 cut(s) 574
AjnI CCWGG 3 cut(s) 33, 267, 654
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AloI GAACNNNNNNTCC 4 cut(s) 99, 120, 131, 152
AluBI AGCT 6 cut(s) 221, 305, 546, 580, 623, 698
AluI AGCT 6 cut(s) 221, 305, 546, 580, 623, 698
Alw26I GTCTC 2 cut(s) 73, 608
AlwI GGATC 5 cut(s) 105, 374, 387, 406, 419
Ama87I CYCGRG 2 cut(s) 39, 72
AoxI GGCC 6 cut(s) 3, 169, 259, 270, 288, 497
Asp700I GAANNNNTTC 1 cut(s) 538
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 6 cut(s) 4, 169, 259, 271, 288, 492
AsuC2I CCSGG 2 cut(s) 496, 680
AvaI CYCGRG 2 cut(s) 39, 72
AvaII GGWCC 1 cut(s) 492
BaeGI GKGCMC 1 cut(s) 512
BamHI GGATCC 2 cut(s) 379, 411
BanII GRGCYC 1 cut(s) 369
BbrPI CACGTG 1 cut(s) 331
BccI CCATC 2 cut(s) 122, 512
BciT130I CCWGG 3 cut(s) 35, 269, 656
BcnI CCSGG 2 cut(s) 496, 680
BcoDI GTCTC 2 cut(s) 73, 608
BfaI CTAG 1 cut(s) 600
BfmI CTRYAG 1 cut(s) 547
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 2 cut(s) 262, 671
BlsI GCNGC 2 cut(s) 263, 672
Bme1390I CCNGG 5 cut(s) 35, 269, 496, 656, 680
Bme18I GGWCC 1 cut(s) 492
BmeT110I CYCGRG 2 cut(s) 39, 72
BmgBI CACGTC 1 cut(s) 574
BmgT120I GGNCC 6 cut(s) 4, 169, 259, 271, 288, 492
BmiI GGNNCC 5 cut(s) 368, 381, 413, 494, 635
BmrFI CCNGG 5 cut(s) 35, 269, 496, 656, 680
BmsI GCATC 1 cut(s) 34
BpmI CTGGAG 2 cut(s) 498, 638
BpuEI CTTGAG 2 cut(s) 33, 603
BpuMI CCSGG 2 cut(s) 496, 680
BsaAI YACGTR 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 33, 594
BseBI CCWGG 3 cut(s) 35, 269, 656
BseDI CCNNGG 2 cut(s) 33, 594
BseGI GGATG 2 cut(s) 49, 114
BseMII CTCAG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 462
BseSI GKGCMC 1 cut(s) 512
BsgI GTGCAG 1 cut(s) 630
Bsh1236I CGCG 3 cut(s) 26, 93, 670
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 6 cut(s) 5, 171, 261, 272, 290, 499
BsiEI CGRYCG 1 cut(s) 24
BsiHKCI CYCGRG 2 cut(s) 39, 72
BsiSI CCGG 2 cut(s) 496, 680
BsmAI GTCTC 2 cut(s) 73, 608
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 6 cut(s) 5, 171, 261, 272, 290, 499
BsoBI CYCGRG 2 cut(s) 39, 72
Bsp1286I GDGCHC 2 cut(s) 369, 512
Bsp143I GATC 5 cut(s) 110, 379, 386, 396, 411
Bsp68I TCGCGA 1 cut(s) 26
BspACI CCGC 8 cut(s) 7, 91, 118, 124, 262, 299, 416, 670
BspANI GGCC 6 cut(s) 5, 171, 261, 272, 290, 499
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 3 cut(s) 26, 93, 670
BspLI GGNNCC 5 cut(s) 368, 381, 413, 494, 635
BspPI GGATC 5 cut(s) 105, 374, 387, 406, 419
BssECI CCNNGG 2 cut(s) 33, 594
BssMI GATC 5 cut(s) 110, 379, 386, 396, 411
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 594
Bst2UI CCWGG 3 cut(s) 35, 269, 656
Bst6I CTCTTC 1 cut(s) 517
BstACI GRCGYC 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 7, 122
BstDEI CTNAG 1 cut(s) 294
BstEII GGTNACC 1 cut(s) 589
BstF5I GGATG 2 cut(s) 49, 114
BstFNI CGCG 3 cut(s) 26, 93, 670
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 5 cut(s) 113, 382, 389, 399, 414
BstMAI GTCTC 2 cut(s) 73, 608
BstMBI GATC 5 cut(s) 110, 379, 386, 396, 411
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 8 cut(s) 44, 53, 185, 209, 218, 296, 317, 424
BstNI CCWGG 3 cut(s) 35, 269, 656
BstPI GGTNACC 1 cut(s) 589
BstSCI CCNGG 5 cut(s) 33, 267, 494, 654, 678
BstSFI CTRYAG 1 cut(s) 547
BstSLI GKGCMC 1 cut(s) 512
BstUI CGCG 3 cut(s) 26, 93, 670
BstX2I RGATCY 2 cut(s) 379, 411
BstYI RGATCY 2 cut(s) 379, 411
BsuRI GGCC 6 cut(s) 5, 171, 261, 272, 290, 499
BtrI CACGTC 1 cut(s) 574
BtsCI GGATG 2 cut(s) 49, 114
BtuMI TCGCGA 1 cut(s) 26
Cac8I GCNNGC 2 cut(s) 7, 122
CfoI GCGC 1 cut(s) 670
Cfr13I GGNCC 6 cut(s) 4, 169, 259, 271, 288, 492
Csp6I GTAC 1 cut(s) 566
CviAII CATG 1 cut(s) 390
CviQI GTAC 1 cut(s) 566
DdeI CTNAG 1 cut(s) 294
DpnI GATC 5 cut(s) 112, 381, 388, 398, 413
DpnII GATC 5 cut(s) 110, 379, 386, 396, 411
DraI TTTAAA 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 517
EarI CTCTTC 1 cut(s) 517
EciI GGCGGA 2 cut(s) 107, 314
Eco130I CCWWGG 1 cut(s) 594
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 492
Eco57I CTGAAG 2 cut(s) 136, 270
Eco72I CACGTG 1 cut(s) 331
Eco88I CYCGRG 2 cut(s) 39, 72
Eco91I GGTNACC 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 169
EcoO65I GGTNACC 1 cut(s) 589
EcoRII CCWGG 3 cut(s) 33, 267, 654
EcoT14I CCWWGG 1 cut(s) 594
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 1 cut(s) 393
FaiI YATR 2 cut(s) 391, 695
FatI CATG 1 cut(s) 389
FauI CCCGC 4 cut(s) 14, 98, 117, 423
Fnu4HI GCNGC 2 cut(s) 262, 671
FokI GGATG 2 cut(s) 56, 101
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 262, 671
FspBI CTAG 1 cut(s) 600
GlaI GCGC 1 cut(s) 669
GluI GCNGC 2 cut(s) 262, 671
GsuI CTGGAG 2 cut(s) 498, 638
HaeIII GGCC 6 cut(s) 5, 171, 261, 272, 290, 499
HapII CCGG 2 cut(s) 496, 680
HhaI GCGC 1 cut(s) 670
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 1 cut(s) 393
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HinfI GANTC 2 cut(s) 616, 689
HpaII CCGG 2 cut(s) 496, 680
Hpy188I TCNGA 5 cut(s) 148, 155, 250, 281, 371
Hpy188III TCNNGA 7 cut(s) 25, 41, 50, 72, 74, 490, 515
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 5 cut(s) 355, 431, 492, 496, 647
HpyCH4IV ACGT 3 cut(s) 13, 330, 573
HpyCH4V TGCA 2 cut(s) 212, 611
HpyF10VI GCNNNNNNNGC 8 cut(s) 44, 53, 185, 209, 218, 296, 317, 424
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 3 cut(s) 13, 330, 573
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 1 cut(s) 393
HspAI GCGC 1 cut(s) 668
Kzo9I GATC 5 cut(s) 110, 379, 386, 396, 411
LmnI GCTCC 2 cut(s) 372, 424
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 600
MaeII ACGT 3 cut(s) 13, 330, 573
MaeIII GTNAC 1 cut(s) 589
MalI GATC 5 cut(s) 112, 381, 388, 398, 413
MboI GATC 5 cut(s) 110, 379, 386, 396, 411
MboII GAAGA 4 cut(s) 227, 263, 534, 693
MfeI CAATTG 1 cut(s) 706
MflI RGATCY 2 cut(s) 379, 411
MhlI GDGCHC 2 cut(s) 369, 512
MluCI AATT 1 cut(s) 706
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 1 cut(s) 666
MroXI GAANNNNTTC 1 cut(s) 538
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 388
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 2 cut(s) 496, 680
MspR9I CCNGG 5 cut(s) 35, 269, 496, 656, 680
MunI CAATTG 1 cut(s) 706
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 3 cut(s) 35, 269, 656
MvnI CGCG 3 cut(s) 26, 93, 670
MwoI GCNNNNNNNGC 8 cut(s) 44, 53, 185, 209, 218, 296, 317, 424
NciI CCSGG 2 cut(s) 496, 680
NdeII GATC 5 cut(s) 110, 379, 386, 396, 411
NlaIII CATG 1 cut(s) 393
NlaIV GGNNCC 5 cut(s) 368, 381, 413, 494, 635
NruI TCGCGA 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 72
PctI GAATGC 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 538
PfeI GAWTC 1 cut(s) 689
PflMI CCANNNNNTGG 1 cut(s) 583
PfoI TCCNGGA 1 cut(s) 654
PkrI GCNGC 2 cut(s) 263, 672
PleI GAGTC 1 cut(s) 610
PmaCI CACGTG 1 cut(s) 331
PmlI CACGTG 1 cut(s) 331
PpsI GAGTC 1 cut(s) 610
Ppu21I YACGTR 1 cut(s) 331
Psp6I CCWGG 3 cut(s) 33, 267, 654
PspCI CACGTG 1 cut(s) 331
PspEI GGTNACC 1 cut(s) 589
PspGI CCWGG 3 cut(s) 33, 267, 654
PspN4I GGNNCC 5 cut(s) 368, 381, 413, 494, 635
PspPI GGNCC 6 cut(s) 4, 169, 259, 271, 288, 492
PsuI RGATCY 2 cut(s) 379, 411
RruI TCGCGA 1 cut(s) 26
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
RseI CAYNNNNRTG 1 cut(s) 388
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 2 cut(s) 262, 671
Sau3AI GATC 5 cut(s) 110, 379, 386, 396, 411
Sau96I GGNCC 6 cut(s) 4, 169, 259, 271, 288, 492
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 5 cut(s) 35, 269, 496, 656, 680
SduI GDGCHC 2 cut(s) 369, 512
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 1 cut(s) 547
Sfr274I CTCGAG 1 cut(s) 72
SinI GGWCC 1 cut(s) 492
SlaI CTCGAG 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 388
SmlI CTYRAG 3 cut(s) 48, 72, 618
SmoI CTYRAG 3 cut(s) 48, 72, 618
Sse9I AATT 1 cut(s) 706
SsiI CCGC 8 cut(s) 7, 91, 118, 124, 262, 299, 416, 670
SspMI CTAG 1 cut(s) 600
StyD4I CCNGG 5 cut(s) 33, 267, 494, 654, 678
StyI CCWWGG 1 cut(s) 594
TaiI ACGT 3 cut(s) 16, 333, 576
TaqI TCGA 3 cut(s) 73, 165, 228
TaqII GACCGA 1 cut(s) 10
TasI AATT 1 cut(s) 706
TatI WGTACW 1 cut(s) 565
TauI GCSGC 2 cut(s) 264, 673
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 120
Van91I CCANNNNNTGG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 492
XhoI CTCGAG 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 538
XspI CTAG 1 cut(s) 600
ZraI GACGTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.