Rroxscaffold_7G00199530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000214
Physical Location & Seq
Reverse (-)
46311755 .. 46312541
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199530.1

Sequence Viewer

Length: 504 bp
ATGAGCTTTGGTGGAGGTGATAATCAAGTGAGCCCGGGTCCTACACCTCGCGATCATTTGCCGGATGATGCTATGTCCTATTATGGGCTTCCCATCTGCCGTCCCATAGCAGCTCTTTGGCAGGTGCCCGATGATTTTAGCAGTTGGGGACCAAGGAGAAAATTTGATGGCATTCAATTTCCTTTGACCCCTTGGCATCGTAGCAAATCCTACCCATTACGGTGCGACTATTACTGCACCAAGCGTGGCCACATAGGAGGTATCGCATTCTTGGAATTCGGCTTTGCAAATTTATCTTTTGCACTTCTTCCAACAAACCTACTCGGCCCGGAATTCTCGGCCATTGCTCTCTACAATGGTATTTGCGTTGGCCTTGGGCAACCTGTATTGGGTGAGTTATATTGCTCCCTTTATAAAGTCGTAATGCGCCCCTTCGATACCGACATTAGTGGCCCAGATACCTCTACTAGCAAGGCTATTTTCTATGTCACCAAGCATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.52

Weight (kDa)

7.64

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 124
AccII CGCG 1 cut(s) 51
AcoI YGGCCR 2 cut(s) 247, 339
AcsI RAATTY 4 cut(s) 161, 275, 289, 332
AfiI CCNNNNNNNGG 2 cut(s) 84, 389
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 2 cut(s) 6, 113
AluI AGCT 2 cut(s) 6, 113
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 5 cut(s) 247, 325, 339, 370, 451
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 4 cut(s) 161, 275, 289, 332
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 4 cut(s) 38, 149, 326, 452
AsuC2I CCSGG 3 cut(s) 35, 36, 329
AsuHPI GGTGA 3 cut(s) 29, 404, 481
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 2 cut(s) 38, 149
BaeGI GKGCMC 1 cut(s) 129
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 122
BccI CCATC 2 cut(s) 101, 161
BceAI ACGGC 1 cut(s) 84
BcnI CCSGG 3 cut(s) 35, 36, 329
BfaI CTAG 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 3 cut(s) 35, 36, 329
Bme18I GGWCC 2 cut(s) 38, 149
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 4 cut(s) 38, 149, 326, 452
BmiI GGNNCC 3 cut(s) 39, 126, 150
BmrFI CCNGG 3 cut(s) 35, 36, 329
BmsI GCATC 2 cut(s) 58, 205
BpuMI CCSGG 3 cut(s) 35, 36, 329
BsaJI CCNNGG 4 cut(s) 34, 152, 191, 373
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 389
Bse3DI GCAATG 1 cut(s) 342
BseDI CCNNGG 4 cut(s) 34, 152, 191, 373
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 2 cut(s) 84, 389
BseMI GCAATG 1 cut(s) 342
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 1 cut(s) 122
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 5 cut(s) 249, 327, 341, 372, 453
BshNI GGYRCC 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 3 cut(s) 35, 62, 329
BslFI GGGAC 2 cut(s) 87, 162
BslI CCNNNNNNNGG 2 cut(s) 84, 389
BsmFI GGGAC 2 cut(s) 87, 162
BsmI GAATGC 2 cut(s) 171, 266
BsnI GGCC 5 cut(s) 249, 327, 341, 372, 453
BsoBI CYCGRG 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 35, 129
Bsp143I GATC 1 cut(s) 52
Bsp68I TCGCGA 1 cut(s) 51
BspANI GGCC 5 cut(s) 249, 327, 341, 372, 453
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 3 cut(s) 39, 126, 150
BspMI ACCTGC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 342
BssECI CCNNGG 4 cut(s) 34, 152, 191, 373
BssMI GATC 1 cut(s) 52
BssT1I CCWWGG 3 cut(s) 152, 191, 373
Bst4CI ACNGT 1 cut(s) 222
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstSCI CCNGG 3 cut(s) 33, 34, 327
BstSLI GKGCMC 1 cut(s) 129
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 122
BsuRI GGCC 5 cut(s) 249, 327, 341, 372, 453
BtsCI GGATG 1 cut(s) 70
BtuMI TCGCGA 1 cut(s) 51
BveI ACCTGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 429
Cfr13I GGNCC 4 cut(s) 38, 149, 326, 452
Cfr9I CCCGGG 1 cut(s) 34
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
EaeI YGGCCR 2 cut(s) 247, 339
Eco130I CCWWGG 3 cut(s) 152, 191, 373
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 38, 149
Eco88I CYCGRG 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 2 cut(s) 275, 332
EcoT14I CCWWGG 3 cut(s) 152, 191, 373
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 3 cut(s) 152, 191, 373
FaiI YATR 8 cut(s) 74, 84, 107, 254, 400, 414, 486, 498
FaqI GGGAC 2 cut(s) 87, 162
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 468
GlaI GCGC 1 cut(s) 428
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 5 cut(s) 249, 327, 341, 372, 453
HapII CCGG 3 cut(s) 35, 62, 329
HhaI GCGC 1 cut(s) 429
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HpaII CCGG 3 cut(s) 35, 62, 329
HphI GGTGA 3 cut(s) 29, 404, 481
Hpy188III TCNNGA 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 237, 287, 302
HspAI GCGC 1 cut(s) 427
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 6 cut(s) 48, 75, 107, 342, 396, 468
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 2 cut(s) 58, 205
MaeI CTAG 1 cut(s) 468
MaeIII GTNAC 1 cut(s) 487
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 1 cut(s) 299
MhlI GDGCHC 2 cut(s) 35, 129
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 5 cut(s) 161, 176, 275, 289, 332
MluNI TGGCCA 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 4 cut(s) 8, 57, 251, 472
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 220
Msp20I TGGCCA 1 cut(s) 249
MspI CCGG 3 cut(s) 35, 62, 329
MspR9I CCNGG 3 cut(s) 35, 36, 329
Mva1269I GAATGC 2 cut(s) 171, 266
MvnI CGCG 1 cut(s) 51
NciI CCSGG 3 cut(s) 35, 36, 329
NdeII GATC 1 cut(s) 52
NlaIV GGNNCC 3 cut(s) 39, 126, 150
NmeAIII GCCGAG 2 cut(s) 303, 317
NmuCI GTSAC 1 cut(s) 487
NruI TCGCGA 1 cut(s) 51
PaqCI CACCTGC 1 cut(s) 112
PctI GAATGC 2 cut(s) 171, 266
PkrI GCNGC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 38
PsiI TTATAA 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 38
PspN4I GGNNCC 3 cut(s) 39, 126, 150
PspPI GGNCC 4 cut(s) 38, 149, 326, 452
PspPPI RGGWCCY 1 cut(s) 38
RruI TCGCGA 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 220
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 4 cut(s) 38, 149, 326, 452
ScrFI CCNGG 3 cut(s) 35, 36, 329
SduI GDGCHC 2 cut(s) 35, 129
SetI ASST 9 cut(s) 8, 19, 49, 115, 126, 262, 321, 385, 464
SfaNI GCATC 2 cut(s) 58, 205
SinI GGWCC 2 cut(s) 38, 149
SmaI CCCGGG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 5 cut(s) 161, 176, 275, 289, 332
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 3 cut(s) 33, 34, 327
StyI CCWWGG 3 cut(s) 152, 191, 373
TaaI ACNGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 435
TasI AATT 5 cut(s) 161, 176, 275, 289, 332
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 487
TspMI CCCGGG 1 cut(s) 34
VpaK11BI GGWCC 2 cut(s) 38, 149
XapI RAATTY 4 cut(s) 161, 275, 289, 332
XmaI CCCGGG 1 cut(s) 34
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.