Rmu_sc0000240.1_g000062

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000240.1
OG0000214
Physical Location & Seq
Forward (+)
286535 .. 288193
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000240.1_g000062.1.cds

Sequence Viewer

Length: 735 bp
atgtgcccatttgataccgacattagtggccccttctggatccttgccttttggctgcagatttatttcactctcttccgtcgcggtaatattccaaaggaacctccaattgattcccttttggggaactggctttgccacaacgtaagtggacgggaccatagtgaaagagccctcctggcctttcgtcgcgccatctcctgcttggatattcgtcttgccactgatcgcgtaagttacgagctctacgcccctaaccactttgctcgccaatttgggttggcccagttggtaccctggcctctggttgattctgtcaattactacacctcttggcggagattagccccgcctgggtcagccccctttcaaagtcagtttactttgatagtgattcccccttgggtcagagcgttataccccctcaacgatgtcgatgacaactatgctgattggtggaaagaagtgtcagtgaactgttgggacctgccacatgacgaactcttcgtcctgatctttcgtggcatgagtagccctgagattctcgcggcactagaggttcaagaggtgaatgaggcggggcctcttccttttggtgaccacgtaccagatattgacccgacagctcgagaggattctagcccagtttgggattgctgtgctgcgagaagaagcacttctgatgttgctgcgagaagaatcacttctgatattgctgcgagaagaagcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

27.85

Weight (kDa)

5.09

Isoelectric Point (pI)

64.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 495
Acc65I GGTACC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 292
AccII CGCG 4 cut(s) 84, 192, 231, 548
AciI CCGC 5 cut(s) 84, 337, 350, 548, 578
AclWI GGATC 2 cut(s) 34, 47
AfaI GTAC 2 cut(s) 294, 606
AfiI CCNNNNNNNGG 4 cut(s) 123, 336, 354, 649
AgsI TTSAA 2 cut(s) 371, 563
AjnI CCWGG 3 cut(s) 177, 296, 352
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 2 cut(s) 244, 626
AluI AGCT 2 cut(s) 244, 626
Alw21I GWGCWC 1 cut(s) 246
AlwI GGATC 2 cut(s) 34, 47
Ama87I CYCGRG 1 cut(s) 627
AoxI GGCC 5 cut(s) 28, 180, 282, 299, 581
ApeKI GCWGC 4 cut(s) 55, 662, 689, 716
ArsI GACNNNNNNTTYG 4 cut(s) 488, 492, 520, 524
Asp700I GAANNNNTTC 2 cut(s) 676, 703
Asp718I GGTACC 1 cut(s) 292
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 5 cut(s) 29, 157, 283, 484, 581
AsuHPI GGTGA 2 cut(s) 580, 608
AvaI CYCGRG 1 cut(s) 627
AvaII GGWCC 2 cut(s) 157, 484
BaeGI GKGCMC 1 cut(s) 8
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 292
BanII GRGCYC 2 cut(s) 175, 246
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 4 cut(s) 42, 649, 676, 703
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 3 cut(s) 179, 298, 354
BfaI CTAG 2 cut(s) 554, 639
BfmI CTRYAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 495
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 5 cut(s) 56, 549, 663, 690, 717
BlsI GCNGC 5 cut(s) 57, 550, 664, 691, 718
Bme1390I CCNGG 3 cut(s) 179, 298, 354
Bme18I GGWCC 2 cut(s) 157, 484
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 5 cut(s) 29, 157, 283, 484, 581
BmiI GGNNCC 7 cut(s) 31, 41, 102, 158, 294, 485, 582
BmrFI CCNGG 3 cut(s) 179, 298, 354
BmrI ACTGGG 2 cut(s) 280, 638
BmuI ACTGGG 2 cut(s) 280, 638
BsaAI YACGTR 1 cut(s) 604
BsaJI CCNNGG 3 cut(s) 296, 353, 401
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 336, 354, 649
Bse1I ACTGG 3 cut(s) 134, 286, 644
BseBI CCWGG 3 cut(s) 179, 298, 354
BseDI CCNNGG 3 cut(s) 296, 353, 401
BseLI CCNNNNNNNGG 4 cut(s) 123, 336, 354, 649
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 3 cut(s) 134, 286, 644
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 4 cut(s) 42, 649, 676, 703
Bsh1236I CGCG 4 cut(s) 84, 192, 231, 548
BshFI GGCC 5 cut(s) 30, 182, 284, 301, 583
BshNI GGYRCC 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 627
BslFI GGGAC 2 cut(s) 170, 497
BslI CCNNNNNNNGG 4 cut(s) 123, 336, 354, 649
BsmFI GGGAC 2 cut(s) 170, 497
BsnI GGCC 5 cut(s) 30, 182, 284, 301, 583
BsoBI CYCGRG 1 cut(s) 627
Bsp1286I GDGCHC 3 cut(s) 8, 175, 246
Bsp143I GATC 3 cut(s) 39, 226, 513
BspACI CCGC 5 cut(s) 84, 337, 350, 548, 578
BspANI GGCC 5 cut(s) 30, 182, 284, 301, 583
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 4 cut(s) 84, 192, 231, 548
BspLI GGNNCC 7 cut(s) 31, 41, 102, 158, 294, 485, 582
BspMAI CTGCAG 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 2 cut(s) 34, 47
BspT107I GGYRCC 1 cut(s) 292
BsrI ACTGG 3 cut(s) 134, 286, 644
BssECI CCNNGG 3 cut(s) 296, 353, 401
BssMI GATC 3 cut(s) 39, 226, 513
BssT1I CCWWGG 1 cut(s) 401
Bst2UI CCWGG 3 cut(s) 179, 298, 354
Bst4CI ACNGT 1 cut(s) 479
Bst6I CTCTTC 3 cut(s) 80, 509, 591
BstBAI YACGTR 1 cut(s) 604
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 537
BstEII GGTNACC 1 cut(s) 596
BstFNI CGCG 4 cut(s) 84, 192, 231, 548
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 3 cut(s) 42, 229, 516
BstMBI GATC 3 cut(s) 39, 226, 513
BstMWI GCNNNNNNNGC 2 cut(s) 179, 531
BstNI CCWGG 3 cut(s) 179, 298, 354
BstPI GGTNACC 1 cut(s) 596
BstSCI CCNGG 3 cut(s) 177, 296, 352
BstSFI CTRYAG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 4 cut(s) 84, 192, 231, 548
BstV1I GCAGC 4 cut(s) 42, 649, 676, 703
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 5 cut(s) 30, 182, 284, 301, 583
BtsIMutI CAGTG 2 cut(s) 222, 477
BveI ACCTGC 1 cut(s) 495
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 5 cut(s) 29, 157, 283, 484, 581
Csp6I GTAC 2 cut(s) 293, 605
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 2 cut(s) 494, 526
CviQI GTAC 2 cut(s) 293, 605
DdeI CTNAG 1 cut(s) 537
DpnI GATC 3 cut(s) 41, 228, 515
DpnII GATC 3 cut(s) 39, 226, 513
Eam1104I CTCTTC 3 cut(s) 80, 509, 591
EarI CTCTTC 3 cut(s) 80, 509, 591
EciI GGCGGA 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 401
Eco24I GRGCYC 2 cut(s) 175, 246
Eco47I GGWCC 2 cut(s) 157, 484
Eco53kI GAGCTC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 627
Eco91I GGTNACC 1 cut(s) 596
EcoICRI GAGCTC 1 cut(s) 244
EcoO109I RGGNCCY 2 cut(s) 484, 581
EcoO65I GGTNACC 1 cut(s) 596
EcoRII CCWGG 3 cut(s) 177, 296, 352
EcoT14I CCWWGG 1 cut(s) 401
EcoT38I GRGCYC 2 cut(s) 175, 246
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 2 cut(s) 497, 529
FaiI YATR 5 cut(s) 162, 418, 447, 495, 527
FalI AAGNNNNNCTT 4 cut(s) 661, 693, 688, 720
FaqI GGGAC 2 cut(s) 170, 497
FatI CATG 2 cut(s) 493, 525
FauI CCCGC 2 cut(s) 357, 571
Fnu4HI GCNGC 5 cut(s) 56, 549, 663, 690, 717
FriOI GRGCYC 2 cut(s) 175, 246
Fsp4HI GCNGC 5 cut(s) 56, 549, 663, 690, 717
FspBI CTAG 2 cut(s) 554, 639
GlaI GCGC 1 cut(s) 193
GluI GCNGC 5 cut(s) 56, 549, 663, 690, 717
HaeIII GGCC 5 cut(s) 30, 182, 284, 301, 583
HhaI GCGC 1 cut(s) 194
Hin1II CATG 2 cut(s) 497, 529
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 6 cut(s) 113, 311, 394, 541, 635, 699
HphI GGTGA 2 cut(s) 580, 608
Hpy166II GTNNAC 3 cut(s) 152, 381, 475
Hpy188I TCNGA 3 cut(s) 410, 682, 709
Hpy188III TCNNGA 4 cut(s) 37, 511, 563, 629
Hpy8I GTNNAC 3 cut(s) 152, 381, 475
Hpy99I CGWCG 2 cut(s) 84, 192
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 2 cut(s) 144, 603
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 531
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 2 cut(s) 144, 603
Hsp92II CATG 2 cut(s) 497, 529
HspAI GCGC 1 cut(s) 192
KpnI GGTACC 1 cut(s) 296
Kzo9I GATC 3 cut(s) 39, 226, 513
Lsp1109I GCAGC 4 cut(s) 42, 649, 676, 703
MaeI CTAG 2 cut(s) 554, 639
MaeII ACGT 2 cut(s) 144, 603
MaeIII GTNAC 2 cut(s) 236, 596
MalI GATC 3 cut(s) 41, 228, 515
MboI GATC 3 cut(s) 39, 226, 513
MboII GAAGA 6 cut(s) 67, 496, 578, 681, 708, 735
MfeI CAATTG 1 cut(s) 108
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 3 cut(s) 8, 175, 246
MluCI AATT 3 cut(s) 108, 272, 319
MroXI GAANNNNTTC 2 cut(s) 676, 703
MspR9I CCNGG 3 cut(s) 179, 298, 354
MunI CAATTG 1 cut(s) 108
MvaI CCWGG 3 cut(s) 179, 298, 354
MvnI CGCG 4 cut(s) 84, 192, 231, 548
MwoI GCNNNNNNNGC 2 cut(s) 179, 531
NdeII GATC 3 cut(s) 39, 226, 513
NlaIII CATG 2 cut(s) 497, 529
NlaIV GGNNCC 7 cut(s) 31, 41, 102, 158, 294, 485, 582
NmuCI GTSAC 1 cut(s) 596
PaeR7I CTCGAG 1 cut(s) 627
PcsI WCGNNNNNNNCGW 1 cut(s) 504
PdmI GAANNNNTTC 2 cut(s) 676, 703
PfeI GAWTC 6 cut(s) 113, 311, 394, 541, 635, 699
PkrI GCNGC 5 cut(s) 57, 550, 664, 691, 718
Ppu21I YACGTR 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 484
Psp124BI GAGCTC 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 3 cut(s) 177, 296, 352
PspEI GGTNACC 1 cut(s) 596
PspGI CCWGG 3 cut(s) 177, 296, 352
PspN4I GGNNCC 7 cut(s) 31, 41, 102, 158, 294, 485, 582
PspPI GGNCC 5 cut(s) 29, 157, 283, 484, 581
PspPPI RGGWCCY 1 cut(s) 484
PstI CTGCAG 1 cut(s) 60
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 2 cut(s) 294, 606
RsaNI GTAC 2 cut(s) 293, 605
SacI GAGCTC 1 cut(s) 246
SatI GCNGC 5 cut(s) 56, 549, 663, 690, 717
Sau3AI GATC 3 cut(s) 39, 226, 513
Sau96I GGNCC 5 cut(s) 29, 157, 283, 484, 581
ScrFI CCNGG 3 cut(s) 179, 298, 354
SduI GDGCHC 3 cut(s) 8, 175, 246
SetI ASST 9 cut(s) 106, 147, 246, 332, 489, 561, 570, 606, 628
SfcI CTRYAG 1 cut(s) 56
Sfr274I CTCGAG 1 cut(s) 627
SinI GGWCC 2 cut(s) 157, 484
SlaI CTCGAG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 627
SmoI CTYRAG 1 cut(s) 627
Sse9I AATT 3 cut(s) 108, 272, 319
SsiI CCGC 5 cut(s) 84, 337, 350, 548, 578
SspI AATATT 1 cut(s) 91
SspMI CTAG 2 cut(s) 554, 639
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 3 cut(s) 177, 296, 352
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 2 cut(s) 147, 606
TaqI TCGA 2 cut(s) 435, 628
TasI AATT 3 cut(s) 108, 272, 319
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 6 cut(s) 113, 311, 394, 541, 635, 699
TscAI CASTG 2 cut(s) 229, 477
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 4 cut(s) 55, 662, 689, 716
Tsp45I GTSAC 1 cut(s) 596
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 2 cut(s) 229, 477
VpaK11BI GGWCC 2 cut(s) 157, 484
XcmI CCANNNNNNNNNTGG 2 cut(s) 146, 202
XhoI CTCGAG 1 cut(s) 627
XmnI GAANNNNTTC 2 cut(s) 676, 703
XspI CTAG 2 cut(s) 554, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.