Rmu_sc0000962.1_g000011

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000962.1
OG0000214
Physical Location & Seq
Forward (+)
49857 .. 50552
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000962.1_g000011.1.cds

Sequence Viewer

Length: 696 bp
atggagaagtatctttgcgacctagaaatggcatccaagaaaccattcgttatcgatcaggtagatgaaatcactgagaaagccacattcaactggaggactaacatgagtattcgatgtagacgtcagaccggagaggagagaagccgactgatgggctttggtggcggtgatagtcaagcgagtctgggtcccacacctcgcgatcgtttgccagatgatgttatggcctattatgggcttcccatccgccgtcccatagcggctcttcggcaagtgcctggtgattttagcagttggggaccaagaaggaaagtgggcttctggcctactgtcactcccgaggaaaaggtttggtatcaggaggtccgagcgagagatttggcccgatgggacgcggtgggtatcacccaaaccatcgatctatgcttctgtctgccctataatactagccgtgcaccgctagccgccgctctttgcttctggaacacctccagcaatacattcgatttccagtttggacaaatgagcataactttgctggatgttcttaccatcacggggttgcctattaattttgacccctatgtgcatggtcaatttgatggcattcaatttcctttgagaatggatatgggtggtcgagggcattacagcaaatcctacccattctggtgcgactattactgcacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

231

Amino Acids

26.52

Weight (kDa)

6.72

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 127
AccBSI CCGCTC 1 cut(s) 473
AccI GTMKAC 1 cut(s) 121
AccII CGCG 2 cut(s) 204, 398
AciI CCGC 7 cut(s) 168, 250, 263, 398, 461, 468, 471
AcyI GRCGYC 1 cut(s) 124
AfiI CCNNNNNNNGG 4 cut(s) 28, 154, 237, 561
AgsI TTSAA 2 cut(s) 91, 614
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
Alw21I GWGCWC 1 cut(s) 460
Alw44I GTGCAC 1 cut(s) 456
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 3 cut(s) 228, 326, 384
ApaLI GTGCAC 1 cut(s) 456
AseI ATTAAT 1 cut(s) 573
Asp700I GAANNNNTTC 1 cut(s) 44
AspS9I GGNCC 4 cut(s) 191, 302, 367, 385
AsuHPI GGTGA 3 cut(s) 182, 296, 400
AsuNHI GCTAGC 1 cut(s) 463
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 3 cut(s) 191, 302, 367
BaeGI GKGCMC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 460
BccI CCATC 6 cut(s) 148, 254, 384, 425, 563, 599
BceAI ACGGC 2 cut(s) 237, 438
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BciT130I CCWGG 1 cut(s) 282
BfaI CTAG 4 cut(s) 23, 450, 464, 694
BisI GCNGC 3 cut(s) 264, 468, 471
BlsI GCNGC 3 cut(s) 265, 469, 472
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 3 cut(s) 191, 302, 367
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 4 cut(s) 191, 302, 367, 385
BmiI GGNNCC 3 cut(s) 192, 193, 303
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 41
BmtI GCTAGC 1 cut(s) 467
BpmI CTGGAG 2 cut(s) 115, 478
Bsa29I ATCGAT 2 cut(s) 54, 420
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 154, 237, 561
Bse1I ACTGG 2 cut(s) 98, 514
BseBI CCWGG 1 cut(s) 282
BseCI ATCGAT 2 cut(s) 54, 420
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 3 cut(s) 32, 246, 550
BseLI CCNNNNNNNGG 4 cut(s) 28, 154, 237, 561
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 98, 514
BseRI GAGGAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 460
BsgI GTGCAG 1 cut(s) 673
Bsh1236I CGCG 2 cut(s) 204, 398
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 3 cut(s) 230, 328, 386
BshVI ATCGAT 2 cut(s) 54, 420
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 4 cut(s) 177, 240, 315, 407
BslI CCNNNNNNNGG 4 cut(s) 28, 154, 237, 561
BsmFI GGGAC 4 cut(s) 177, 240, 315, 407
BsmI GAATGC 1 cut(s) 609
BsnI GGCC 3 cut(s) 230, 328, 386
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 3 cut(s) 55, 205, 421
Bsp68I TCGCGA 1 cut(s) 204
BspACI CCGC 7 cut(s) 168, 250, 263, 398, 461, 468, 471
BspANI GGCC 3 cut(s) 230, 328, 386
BspCNI CTCAG 1 cut(s) 67
BspDI ATCGAT 2 cut(s) 54, 420
BspFNI CGCG 2 cut(s) 204, 398
BspLI GGNNCC 3 cut(s) 192, 193, 303
BspOI GCTAGC 1 cut(s) 467
BspQI GCTCTTC 1 cut(s) 273
BsrBI CCGCTC 1 cut(s) 473
BsrI ACTGG 2 cut(s) 98, 514
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 3 cut(s) 55, 205, 421
BssNI GRCGYC 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 3 cut(s) 32, 246, 550
BstFNI CGCG 2 cut(s) 204, 398
BstKTI GATC 3 cut(s) 58, 208, 424
BstMBI GATC 3 cut(s) 55, 205, 421
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 165, 464
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 460
BstUI CGCG 2 cut(s) 204, 398
Bsu15I ATCGAT 2 cut(s) 54, 420
BsuRI GGCC 3 cut(s) 230, 328, 386
BsuTUI ATCGAT 2 cut(s) 54, 420
BtsCI GGATG 3 cut(s) 32, 246, 550
BtsIMutI CAGTG 1 cut(s) 72
BtuMI TCGCGA 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 465
Cfr13I GGNCC 4 cut(s) 191, 302, 367, 385
ClaI ATCGAT 2 cut(s) 54, 420
CseI GACGC 1 cut(s) 404
CviAII CATG 2 cut(s) 106, 593
DdeI CTNAG 1 cut(s) 75
DpnI GATC 3 cut(s) 57, 207, 423
DpnII GATC 3 cut(s) 55, 205, 421
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 239
Eco47I GGWCC 3 cut(s) 191, 302, 367
Eco88I CYCGRG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 280
FaeI CATG 2 cut(s) 109, 596
FaqI GGGAC 4 cut(s) 177, 240, 315, 407
FatI CATG 2 cut(s) 105, 592
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 264, 468, 471
FokI GGATG 3 cut(s) 19, 233, 557
Fsp4HI GCNGC 3 cut(s) 264, 468, 471
FspBI CTAG 4 cut(s) 23, 450, 464, 694
GluI GCNGC 3 cut(s) 264, 468, 471
GsuI CTGGAG 2 cut(s) 115, 478
HaeIII GGCC 3 cut(s) 230, 328, 386
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 404
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 2 cut(s) 109, 596
HinfI GANTC 1 cut(s) 184
HpaII CCGG 1 cut(s) 132
HphI GGTGA 3 cut(s) 182, 296, 400
Hpy166II GTNNAC 2 cut(s) 122, 458
Hpy188I TCNGA 2 cut(s) 129, 371
Hpy188III TCNNGA 4 cut(s) 203, 341, 362, 484
Hpy8I GTNNAC 2 cut(s) 122, 458
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 458, 592, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 464
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 2 cut(s) 109, 596
KflI GGGWCCC 1 cut(s) 191
Kzo9I GATC 3 cut(s) 55, 205, 421
LguI GCTCTTC 1 cut(s) 273
LweI GCATC 1 cut(s) 41
MaeI CTAG 4 cut(s) 23, 450, 464, 694
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 334
MalI GATC 3 cut(s) 57, 207, 423
MbiI CCGCTC 1 cut(s) 473
MboI GATC 3 cut(s) 55, 205, 421
MboII GAAGA 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 3 cut(s) 574, 599, 614
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 7 cut(s) 90, 130, 210, 337, 358, 502, 638
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 1 cut(s) 573
MslI CAYNNNNRTG 1 cut(s) 673
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 609
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 2 cut(s) 204, 398
MwoI GCNNNNNNNGC 2 cut(s) 165, 464
NdeII GATC 3 cut(s) 55, 205, 421
NheI GCTAGC 1 cut(s) 463
NlaIII CATG 2 cut(s) 109, 596
NlaIV GGNNCC 3 cut(s) 192, 193, 303
NmuCI GTSAC 1 cut(s) 334
NruI TCGCGA 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PctI GAATGC 1 cut(s) 609
PdmI GAANNNNTTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 265, 469, 472
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PpuMI RGGWCCY 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 573
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 192, 193, 303
PspPI GGNCC 4 cut(s) 191, 302, 367, 385
PspPPI RGGWCCY 1 cut(s) 191
PvuI CGATCG 1 cut(s) 208
RruI TCGCGA 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 673
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 3 cut(s) 264, 468, 471
Sau3AI GATC 3 cut(s) 55, 205, 421
Sau96I GGNCC 4 cut(s) 191, 302, 367, 385
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 460
SetI ASST 8 cut(s) 24, 63, 127, 202, 354, 369, 494, 695
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 3 cut(s) 191, 302, 367
SmiMI CAYNNNNRTG 1 cut(s) 673
Sse9I AATT 3 cut(s) 574, 599, 614
SsiI CCGC 7 cut(s) 168, 250, 263, 398, 461, 468, 471
SspMI CTAG 4 cut(s) 23, 450, 464, 694
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 1 cut(s) 127
TaqI TCGA 5 cut(s) 54, 115, 420, 507, 643
TasI AATT 3 cut(s) 574, 599, 614
TauI GCSGC 3 cut(s) 266, 470, 473
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 81
TspRI CASTG 1 cut(s) 79
VneI GTGCAC 1 cut(s) 456
VpaK11BI GGWCC 3 cut(s) 191, 302, 367
VspI ATTAAT 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 4 cut(s) 23, 450, 464, 694
ZraI GACGTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.