Rmu_sc0002141.1_g000011

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002141.1
OG0000214
Physical Location & Seq
Forward (+)
36510 .. 39714
3205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002141.1_g000011.1.cds

Sequence Viewer

Length: 2481 bp
atgagcataactttgctggatgttcttaccatcacggggttgcctattgattttgacccctatgtgcatggtcagtttgatggcattcaatttcctttgagaatggatatggctggtcggggacatcactgcaaatcctactcatgttggcgcaactgttactgcacccagcgtgaccatacaggaggtagcgcattcctggaattctggctttgcaaatttatcttttgcacttcttccaacaaacctactgggccctggaattctctggccactgctctctacaatggtgcattatatcgctccctttatagagccgtaatgcccctatttgataccgacattagtggccccttctggatccttgccttttggctgcagatttatttcactctcttccgtcgtggcgatattccaaatgaacctccagttgattcccttttggggaactggctttgccgcaacataaggtatcgagctccaccctactccgagtgttttatttacttgtacttgctgggagagatgccagacccaaaaatagttctttctaggcgattccctcctccccttgatgatggatttctgcccagtggacgggatcatagtgaaagagccctcctggcctttcctccaccctactccgagtgttttatttacttgtacttgctgggagagatgccagacccaaaaatagttctttctaggcgattccctcctccccttgatgatggatttctgcccagtggacgggatcatagtgaaagagccttcttggccttttgtcacgccatctcttgcttggatattcatcttgccaccgaccgcgcaagttacgagctttacgccgctaaccactttgctcgccaatttgggttggcccagttggtaccctggcctctggttgattctgccaattactacacctcttggcggagattagccccgcctgggtctgccccctttcagagtcagtttactttgataatgattcccccttgggttagagcgctataccctctcaacgatgtcgatgatgactatgctgattggtggaaagaagtgtcaatgaactgttgggacctgccacatgacaaactcttcgtcctgatctttcgtggcatgagtagccctagtccggaggaccgtgaaattcttgagcgcttctccaaacctgcagaacaacccccgcgacctattctgccttctcgctcattgcgtccagggatacaaatccacgagcctagggcaatagccgggaaacaaaaggcaatagcagaggagacttctaatggagagtcttctcatgatgaagatcctgctgaggccactgatgtctttgcttgcaaatgcgatcgagctcaacttgtcgaagagagttttaaagatgatgaacctctgggaatgcgactggtccgtcaaaggaccactgatccctctcgcctgagcgaagctggaccctcagccactgcagaagagctaattatctcgctagttaaagcatcaactaaccctgtggcacctctcccatctctcactatagagcatctgcaagagattctagctgcactagaggttcaagaggtgaatgaggcggggccacttcttggtgaccacgtaccagatatcgacccgacagctcgagaggattctgtttgtactgaggaggtggctgcaaatgctgctagtcttataggagggacagtcgccccagagatggaaaatgatactaatggtggtggtgccccccaagtctcgcaaacaaatgagacaaccgttgaagctgagggctctgtgcttgaatctgctccacttacccatggtgagcagcgagttgagtttccagattcccctgaggttgtccacccttttgcattggtagttcgtgatcttgtagcacctctgccgccgcctcctcctaccagatttgagagattgatgaaggtgttggaggtaactcctcattctgctgtggatgaggctaaaatggtgcctcgcgaacatctgggtcctcaggtattggagactgacattctcccgcgagtcttagaagccttaaggtatcttttccaggagaaggtattgaccctgcagcaatttagtgctattgatgatctgttgaatgaacttgatatggcccgccgacgtcaatcagccgcgaacacccaggctcgggatgctcaagaggctttgaatagtgtctctcgagaaatggacatctcccgcgatattttaaatggacgatccatccgcctgcgggaactacaaatccaaaggtccgacttcaaacttcaaatcgaggacctccaagcccatttagcctttgttgagaatgcgattgttgcagaagaagctcaactcgatgagcctttggctgcttctgaagaaatgggccgaacctggcccatgtcagagaacgggccactcagggcgaaactagtgctattgcagcgaaacgtcacgtggaggaactttgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

826

Amino Acids

92.95

Weight (kDa)

4.91

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1416
AatII GACGTC 1 cut(s) 2149
Acc36I ACCTGC 2 cut(s) 1092, 1183
Acc65I GGTACC 1 cut(s) 889
AccB1I GGYRCC 4 cut(s) 889, 1519, 1742, 1990
AccB7I CCANNNNNTGG 1 cut(s) 1607
AccII CGCG 6 cut(s) 828, 1192, 1998, 2041, 2159, 2226
AccIII TCCGGA 1 cut(s) 1138
AclWI GGATC 7 cut(s) 355, 368, 609, 762, 1310, 1427, 2238
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 4 cut(s) 203, 218, 262, 1152
AcuI CTGAAG 1 cut(s) 2403
AcvI CACGTG 1 cut(s) 2463
AcyI GRCGYC 1 cut(s) 2146
AfaI GTAC 5 cut(s) 512, 665, 891, 1620, 1660
AfeI AGCGCT 2 cut(s) 1011, 1163
AflII CTTAAG 1 cut(s) 2056
AgsI TTSAA 8 cut(s) 89, 1580, 1781, 1802, 2122, 2194, 2287, 2294
AhlI ACTAGT 1 cut(s) 2437
AjnI CCWGG 9 cut(s) 198, 257, 621, 893, 949, 1222, 2070, 2166, 2399
AloI GAACNNNNNNTCC 2 cut(s) 2253, 2285
AluBI AGCT 9 cut(s) 479, 841, 1361, 1454, 1480, 1565, 1640, 1784, 2354
AluI AGCT 9 cut(s) 479, 841, 1361, 1454, 1480, 1565, 1640, 1784, 2354
Alw21I GWGCWC 2 cut(s) 481, 1363
Alw26I GTCTC 5 cut(s) 1277, 1759, 1763, 2018, 2206
AlwI GGATC 7 cut(s) 355, 368, 609, 762, 1310, 1427, 2238
AlwNI CAGNNNCTG 1 cut(s) 1469
Ama87I CYCGRG 3 cut(s) 1641, 2172, 2205
Aor13HI TCCGGA 1 cut(s) 1138
Aor51HI AGCGCT 2 cut(s) 1011, 1163
ApaI GGGCCC 1 cut(s) 258
ApeKI GCWGC 8 cut(s) 376, 1565, 1673, 1682, 1828, 2092, 2375, 2449
ApoI RAATTY 4 cut(s) 203, 218, 262, 1152
ArsI GACNNNNNNTTYG 4 cut(s) 1085, 1089, 1117, 1121
Asp718I GGTACC 1 cut(s) 889
AspA2I CCTAGG 1 cut(s) 1244
AspLEI GCGC 5 cut(s) 153, 194, 830, 1012, 1164
AsuC2I CCSGG 1 cut(s) 1258
AsuHPI GGTGA 3 cut(s) 1597, 1622, 1835
AvaI CYCGRG 3 cut(s) 1641, 2172, 2205
AvaII GGWCC 8 cut(s) 1081, 1144, 1414, 1425, 1457, 2009, 2277, 2302
AvrII CCTAGG 1 cut(s) 1244
AxyI CCTNAGG 2 cut(s) 1854, 2013
BaeGI GKGCMC 2 cut(s) 258, 1747
BalI TGGCCA 1 cut(s) 272
BamHI GGATCC 1 cut(s) 360
BanI GGYRCC 4 cut(s) 889, 1519, 1742, 1990
BanII GRGCYC 5 cut(s) 258, 481, 619, 1363, 1793
BauI CACGAG 1 cut(s) 1238
BbrPI CACGTG 1 cut(s) 2463
BbsI GAAGAC 1 cut(s) 1293
Bbv12I GWGCWC 2 cut(s) 481, 1363
BbvCI CCTCAGC 3 cut(s) 1323, 1462, 1785
BbvI GCAGC 8 cut(s) 363, 1552, 1660, 1669, 1840, 2104, 2362, 2461
BccI CCATC 8 cut(s) 38, 74, 572, 725, 800, 1537, 1711, 2255
BceAI ACGGC 1 cut(s) 302
BcgI CGANNNNNNTGC 2 cut(s) 2422, 2456
BciT130I CCWGG 9 cut(s) 200, 259, 623, 895, 951, 1224, 2072, 2168, 2401
BciVI GTATCC 1 cut(s) 1221
BcnI CCSGG 1 cut(s) 1258
BcoDI GTCTC 5 cut(s) 1277, 1759, 1763, 2018, 2206
BcuI ACTAGT 1 cut(s) 2437
BfaI CTAG 9 cut(s) 552, 705, 1134, 1245, 1493, 1562, 1571, 1686, 2438
BfmI CTRYAG 5 cut(s) 377, 1176, 1470, 1539, 2090
BfoI RGCGCY 2 cut(s) 1013, 1165
BfrI CTTAAG 1 cut(s) 2056
BfuAI ACCTGC 2 cut(s) 1092, 1183
BfuI GTATCC 1 cut(s) 1221
BglI GCCNNNNNGGC 2 cut(s) 623, 776
BlnI CCTAGG 1 cut(s) 1244
Bme18I GGWCC 8 cut(s) 1081, 1144, 1414, 1425, 1457, 2009, 2277, 2302
BmeT110I CYCGRG 3 cut(s) 1641, 2172, 2205
BmrI ACTGGG 4 cut(s) 261, 585, 738, 877
BmsI GCATC 5 cut(s) 516, 669, 1511, 1555, 2167
BmuI ACTGGG 4 cut(s) 261, 585, 738, 877
BpiI GAAGAC 1 cut(s) 1293
BplI GAGNNNNNCTC 2 cut(s) 1151, 1183
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 4 cut(s) 1323, 1445, 1462, 1785
BpuEI CTTGAG 2 cut(s) 1178, 2166
BpuMI CCSGG 1 cut(s) 1258
BsaAI YACGTR 2 cut(s) 1618, 2463
BsaBI GATNNNNATC 3 cut(s) 810, 1232, 1314
BsaHI GRCGYC 1 cut(s) 2146
BsaJI CCNNGG 8 cut(s) 257, 893, 950, 998, 1223, 1244, 1819, 2166
BsaWI WCCGGW 1 cut(s) 1138
BsaXI ACNNNNNCTCC 2 cut(s) 1689, 1719
Bse1I ACTGG 7 cut(s) 256, 428, 455, 591, 744, 883, 1416
Bse21I CCTNAGG 2 cut(s) 1854, 2013
Bse3DI GCAATG 1 cut(s) 1214
Bse8I GATNNNNATC 3 cut(s) 810, 1232, 1314
BseAI TCCGGA 1 cut(s) 1138
BseBI CCWGG 9 cut(s) 200, 259, 623, 895, 951, 1224, 2072, 2168, 2401
BseDI CCNNGG 8 cut(s) 257, 893, 950, 998, 1223, 1244, 1819, 2166
BseGI GGATG 4 cut(s) 25, 1981, 2182, 2247
BseJI GATNNNNATC 3 cut(s) 810, 1232, 1314
BseMI GCAATG 1 cut(s) 1214
BseMII CTCAG 8 cut(s) 1314, 1436, 1476, 1653, 1776, 1845, 2027, 2440
BseNI ACTGG 7 cut(s) 256, 428, 455, 591, 744, 883, 1416
BseRI GAGGAG 6 cut(s) 555, 708, 1295, 1679, 1905, 1950
BseSI GKGCMC 2 cut(s) 258, 1747
BseXI GCAGC 8 cut(s) 363, 1552, 1660, 1669, 1840, 2104, 2362, 2461
BseYI CCCAGC 3 cut(s) 168, 517, 670
BsgI GTGCAG 2 cut(s) 148, 1551
Bsh1236I CGCG 6 cut(s) 828, 1192, 1998, 2041, 2159, 2226
Bsh1285I CGRYCG 2 cut(s) 826, 1357
BshNI GGYRCC 4 cut(s) 889, 1519, 1742, 1990
BsiEI CGRYCG 2 cut(s) 826, 1357
BsiHKAI GWGCWC 2 cut(s) 481, 1363
BsiHKCI CYCGRG 3 cut(s) 1641, 2172, 2205
BsiSI CCGG 2 cut(s) 1139, 1257
BslFI GGGAC 3 cut(s) 135, 1094, 1714
BsmAI GTCTC 5 cut(s) 1277, 1759, 1763, 2018, 2206
BsmFI GGGAC 3 cut(s) 135, 1094, 1714
BsmI GAATGC 4 cut(s) 84, 194, 1410, 2338
BsoBI CYCGRG 3 cut(s) 1641, 2172, 2205
Bsp120I GGGCCC 1 cut(s) 254
Bsp1286I GDGCHC 6 cut(s) 258, 481, 619, 1363, 1747, 1793
Bsp13I TCCGGA 1 cut(s) 1138
Bsp19I CCATGG 1 cut(s) 1819
Bsp68I TCGCGA 1 cut(s) 1998
BspCNI CTCAG 8 cut(s) 1315, 1437, 1475, 1654, 1777, 1846, 2026, 2439
BspEI TCCGGA 1 cut(s) 1138
BspFNI CGCG 6 cut(s) 828, 1192, 1998, 2041, 2159, 2226
BspHI TCATGA 1 cut(s) 1306
BspMAI CTGCAG 4 cut(s) 381, 1180, 1474, 2094
BspMI ACCTGC 2 cut(s) 1092, 1183
BspPI GGATC 7 cut(s) 355, 368, 609, 762, 1310, 1427, 2238
BspQI GCTCTTC 1 cut(s) 1470
BspT107I GGYRCC 4 cut(s) 889, 1519, 1742, 1990
BspTI CTTAAG 1 cut(s) 2056
BsrDI GCAATG 1 cut(s) 1214
BsrI ACTGG 7 cut(s) 256, 428, 455, 591, 744, 883, 1416
BssECI CCNNGG 8 cut(s) 257, 893, 950, 998, 1223, 1244, 1819, 2166
BssNI GRCGYC 1 cut(s) 2146
BssSI CACGAG 1 cut(s) 1238
BssT1I CCWWGG 3 cut(s) 998, 1244, 1819
Bst2BI CACGAG 1 cut(s) 1238
Bst2UI CCWGG 9 cut(s) 200, 259, 623, 895, 951, 1224, 2072, 2168, 2401
Bst4CI ACNGT 5 cut(s) 158, 1076, 1148, 1705, 1777
Bst6I CTCTTC 4 cut(s) 401, 1106, 1368, 1470
BstACI GRCGYC 1 cut(s) 2146
BstAFI CTTAAG 1 cut(s) 2056
BstAPI GCANNNNNTGC 1 cut(s) 1682
BstBAI YACGTR 2 cut(s) 1618, 2463
BstC8I GCNNGC 4 cut(s) 865, 1345, 2140, 2255
BstDEI CTNAG 9 cut(s) 1323, 1445, 1462, 1662, 1785, 1854, 2013, 2047, 2426
BstDSI CCRYGG 1 cut(s) 1819
BstEII GGTNACC 1 cut(s) 1610
BstF5I GGATG 4 cut(s) 25, 1981, 2182, 2247
BstFNI CGCG 6 cut(s) 828, 1192, 1998, 2041, 2159, 2226
BstH2I RGCGCY 2 cut(s) 1013, 1165
BstHHI GCGC 5 cut(s) 153, 194, 830, 1012, 1164
BstMAI GTCTC 5 cut(s) 1277, 1759, 1763, 2018, 2206
BstMCI CGRYCG 2 cut(s) 826, 1357
BstNI CCWGG 9 cut(s) 200, 259, 623, 895, 951, 1224, 2072, 2168, 2401
BstPI GGTNACC 1 cut(s) 1610
BstSFI CTRYAG 5 cut(s) 377, 1176, 1470, 1539, 2090
BstSLI GKGCMC 2 cut(s) 258, 1747
BstUI CGCG 6 cut(s) 828, 1192, 1998, 2041, 2159, 2226
BstV1I GCAGC 8 cut(s) 363, 1552, 1660, 1669, 1840, 2104, 2362, 2461
BstV2I GAAGAC 1 cut(s) 1293
BstX2I RGATCY 2 cut(s) 360, 1315
BstYI RGATCY 2 cut(s) 360, 1315
Bsu36I CCTNAGG 2 cut(s) 1854, 2013
BsuI GTATCC 1 cut(s) 1221
BtgI CCRYGG 1 cut(s) 1819
BtsCI GGATG 4 cut(s) 25, 1981, 2182, 2247
BtsI GCAGTG 3 cut(s) 127, 273, 1467
BtsIMutI CAGTG 7 cut(s) 127, 273, 598, 751, 1329, 1428, 1467
BtuMI TCGCGA 1 cut(s) 1998
BveI ACCTGC 2 cut(s) 1092, 1183
Cac8I GCNNGC 4 cut(s) 865, 1345, 2140, 2255
CaiI CAGNNNCTG 1 cut(s) 1469
CciI TCATGA 1 cut(s) 1306
CfoI GCGC 5 cut(s) 153, 194, 830, 1012, 1164
CseI GACGC 1 cut(s) 1208
Csp6I GTAC 5 cut(s) 511, 664, 890, 1619, 1659
CviAII CATG 7 cut(s) 68, 144, 1091, 1123, 1307, 1820, 2407
CviQI GTAC 5 cut(s) 511, 664, 890, 1619, 1659
DdeI CTNAG 9 cut(s) 1323, 1445, 1462, 1662, 1785, 1854, 2013, 2047, 2426
DraI TTTAAA 2 cut(s) 1384, 2235
DrdI GACNNNNNNGTC 1 cut(s) 1416
DseDI GACNNNNNNGTC 1 cut(s) 1416
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 4 cut(s) 401, 1106, 1368, 1470
EarI CTCTTC 4 cut(s) 401, 1106, 1368, 1470
EciI GGCGGA 2 cut(s) 949, 2240
Ecl136II GAGCTC 2 cut(s) 479, 1361
Eco130I CCWWGG 3 cut(s) 998, 1244, 1819
Eco24I GRGCYC 5 cut(s) 258, 481, 619, 1363, 1793
Eco32I GATATC 1 cut(s) 1627
Eco47I GGWCC 8 cut(s) 1081, 1144, 1414, 1425, 1457, 2009, 2277, 2302
Eco47III AGCGCT 2 cut(s) 1011, 1163
Eco53kI GAGCTC 2 cut(s) 479, 1361
Eco57I CTGAAG 1 cut(s) 2403
Eco72I CACGTG 1 cut(s) 2463
Eco81I CCTNAGG 2 cut(s) 1854, 2013
Eco88I CYCGRG 3 cut(s) 1641, 2172, 2205
Eco91I GGTNACC 1 cut(s) 1610
EcoICRI GAGCTC 2 cut(s) 479, 1361
EcoO109I RGGNCCY 4 cut(s) 255, 1081, 2009, 2302
EcoO65I GGTNACC 1 cut(s) 1610
EcoRI GAATTC 2 cut(s) 203, 262
EcoRII CCWGG 9 cut(s) 198, 257, 621, 893, 949, 1222, 2070, 2166, 2399
EcoRV GATATC 1 cut(s) 1627
EcoT14I CCWWGG 3 cut(s) 998, 1244, 1819
EcoT38I GRGCYC 5 cut(s) 258, 481, 619, 1363, 1793
ErhI CCWWGG 3 cut(s) 998, 1244, 1819
FaeI CATG 7 cut(s) 71, 147, 1094, 1126, 1310, 1823, 2410
FaqI GGGAC 3 cut(s) 135, 1094, 1714
FatI CATG 7 cut(s) 67, 143, 1090, 1122, 1306, 1819, 2406
FauI CCCGC 7 cut(s) 954, 1197, 1588, 2046, 2147, 2231, 2250
FokI GGATG 4 cut(s) 32, 1988, 2189, 2234
FriOI GRGCYC 5 cut(s) 258, 481, 619, 1363, 1793
FspBI CTAG 9 cut(s) 552, 705, 1134, 1245, 1493, 1562, 1571, 1686, 2438
GlaI GCGC 5 cut(s) 152, 193, 829, 1011, 1163
GsaI CCCAGC 3 cut(s) 172, 521, 674
GsuI CTGGAG 1 cut(s) 411
HaeII RGCGCY 2 cut(s) 1013, 1165
HapII CCGG 2 cut(s) 1139, 1257
HgaI GACGC 1 cut(s) 1208
HhaI GCGC 5 cut(s) 153, 194, 830, 1012, 1164
Hin1I GRCGYC 1 cut(s) 2146
Hin1II CATG 7 cut(s) 71, 147, 1094, 1126, 1310, 1823, 2410
Hin6I GCGC 5 cut(s) 151, 192, 828, 1010, 1162
HinP1I GCGC 5 cut(s) 151, 192, 828, 1010, 1162
HpaII CCGG 2 cut(s) 1139, 1257
HphI GGTGA 3 cut(s) 1597, 1622, 1835
Hpy166II GTNNAC 4 cut(s) 596, 749, 978, 1864
Hpy188I TCNGA 6 cut(s) 493, 646, 969, 2281, 2383, 2413
Hpy8I GTNNAC 4 cut(s) 596, 749, 978, 1864
Hpy99I CGWCG 2 cut(s) 405, 2148
HpyAV CCTTC 5 cut(s) 364, 781, 1215, 1936, 2071
HpyCH4III ACNGT 5 cut(s) 158, 1076, 1148, 1705, 1777
HpyCH4IV ACGT 4 cut(s) 1617, 2146, 2457, 2462
HpyF3I CTNAG 9 cut(s) 1323, 1445, 1462, 1662, 1785, 1854, 2013, 2047, 2426
HpySE526I ACGT 4 cut(s) 1617, 2146, 2457, 2462
Hsp92I GRCGYC 1 cut(s) 2146
Hsp92II CATG 7 cut(s) 71, 147, 1094, 1126, 1310, 1823, 2410
HspAI GCGC 5 cut(s) 151, 192, 828, 1010, 1162
Kpn2I TCCGGA 1 cut(s) 1138
KpnI GGTACC 1 cut(s) 893
LguI GCTCTTC 1 cut(s) 1470
LmnI GCTCC 3 cut(s) 308, 484, 1813
Lsp1109I GCAGC 8 cut(s) 363, 1552, 1660, 1669, 1840, 2104, 2362, 2461
LweI GCATC 5 cut(s) 516, 669, 1511, 1555, 2167
MaeI CTAG 9 cut(s) 552, 705, 1134, 1245, 1493, 1562, 1571, 1686, 2438
MaeII ACGT 4 cut(s) 1617, 2146, 2457, 2462
MaeIII GTNAC 7 cut(s) 158, 173, 785, 833, 1610, 1954, 2458
MboII GAAGA 9 cut(s) 228, 388, 1093, 1293, 1325, 1385, 1487, 2360, 2396
MflI RGATCY 2 cut(s) 360, 1315
MhlI GDGCHC 6 cut(s) 258, 481, 619, 1363, 1747, 1793
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 9 cut(s) 89, 203, 218, 262, 869, 916, 1152, 1482, 2096
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 3 cut(s) 979, 1307, 2052
MmeI TCCRAC 3 cut(s) 264, 1929, 2304
Mox20I TGGCCA 1 cut(s) 272
MroI TCCGGA 1 cut(s) 1138
MscI TGGCCA 1 cut(s) 272
MseI TTAA 4 cut(s) 1383, 1497, 2057, 2234
Msp20I TGGCCA 1 cut(s) 272
MspCI CTTAAG 1 cut(s) 2056
MspI CCGG 2 cut(s) 1139, 1257
Mva1269I GAATGC 4 cut(s) 84, 194, 1410, 2338
MvaI CCWGG 9 cut(s) 200, 259, 623, 895, 951, 1224, 2072, 2168, 2401
MvnI CGCG 6 cut(s) 828, 1192, 1998, 2041, 2159, 2226
NciI CCSGG 1 cut(s) 1258
NcoI CCATGG 1 cut(s) 1819
NlaIII CATG 7 cut(s) 71, 147, 1094, 1126, 1310, 1823, 2410
NmuCI GTSAC 4 cut(s) 173, 785, 1610, 2458
NruI TCGCGA 1 cut(s) 1998
PaeR7I CTCGAG 2 cut(s) 1641, 2205
PagI TCATGA 1 cut(s) 1306
PciSI GCTCTTC 1 cut(s) 1470
PcsI WCGNNNNNNNCGW 1 cut(s) 1216
PctI GAATGC 4 cut(s) 84, 194, 1410, 2338
PfeI GAWTC 9 cut(s) 434, 558, 711, 908, 991, 1558, 1649, 1802, 1847
PflMI CCANNNNNTGG 1 cut(s) 1607
PfoI TCCNGGA 2 cut(s) 198, 2070
Ple19I CGATCG 1 cut(s) 1357
PleI GAGTC 3 cut(s) 978, 1306, 2051
PmaCI CACGTG 1 cut(s) 2463
PmlI CACGTG 1 cut(s) 2463
PpsI GAGTC 3 cut(s) 978, 1306, 2051
Ppu21I YACGTR 2 cut(s) 1618, 2463
PpuMI RGGWCCY 3 cut(s) 1081, 2009, 2302
Psp124BI GAGCTC 2 cut(s) 481, 1363
Psp5II RGGWCCY 3 cut(s) 1081, 2009, 2302
Psp6I CCWGG 9 cut(s) 198, 257, 621, 893, 949, 1222, 2070, 2166, 2399
PspCI CACGTG 1 cut(s) 2463
PspEI GGTNACC 1 cut(s) 1610
PspFI CCCAGC 3 cut(s) 168, 517, 670
PspGI CCWGG 9 cut(s) 198, 257, 621, 893, 949, 1222, 2070, 2166, 2399
PspOMI GGGCCC 1 cut(s) 254
PspPPI RGGWCCY 3 cut(s) 1081, 2009, 2302
PstI CTGCAG 4 cut(s) 381, 1180, 1474, 2094
PstNI CAGNNNCTG 1 cut(s) 1469
PsuI RGATCY 2 cut(s) 360, 1315
PvuI CGATCG 1 cut(s) 1357
RruI TCGCGA 1 cut(s) 1998
RsaI GTAC 5 cut(s) 512, 665, 891, 1620, 1660
RsaNI GTAC 5 cut(s) 511, 664, 890, 1619, 1659
SacI GAGCTC 2 cut(s) 481, 1363
SapI GCTCTTC 1 cut(s) 1470
SaqAI TTAA 4 cut(s) 1383, 1497, 2057, 2234
SchI GAGTC 3 cut(s) 979, 1307, 2052
SduI GDGCHC 6 cut(s) 258, 481, 619, 1363, 1747, 1793
SfaNI GCATC 5 cut(s) 516, 669, 1511, 1555, 2167
SfcI CTRYAG 5 cut(s) 377, 1176, 1470, 1539, 2090
Sfr274I CTCGAG 2 cut(s) 1641, 2205
SinI GGWCC 8 cut(s) 1081, 1144, 1414, 1425, 1457, 2009, 2277, 2302
SlaI CTCGAG 2 cut(s) 1641, 2205
SmlI CTYRAG 5 cut(s) 1157, 1641, 2056, 2181, 2205
SmoI CTYRAG 5 cut(s) 1157, 1641, 2056, 2181, 2205
SpeI ACTAGT 1 cut(s) 2437
Sse9I AATT 9 cut(s) 89, 203, 218, 262, 869, 916, 1152, 1482, 2096
SspMI CTAG 9 cut(s) 552, 705, 1134, 1245, 1493, 1562, 1571, 1686, 2438
SstI GAGCTC 2 cut(s) 481, 1363
StyI CCWWGG 3 cut(s) 998, 1244, 1819
TaaI ACNGT 5 cut(s) 158, 1076, 1148, 1705, 1777
TaiI ACGT 4 cut(s) 1620, 2149, 2460, 2465
TaqI TCGA 9 cut(s) 475, 1032, 1357, 1371, 1629, 1642, 2206, 2298, 2361
TasI AATT 9 cut(s) 89, 203, 218, 262, 869, 916, 1152, 1482, 2096
TatI WGTACW 3 cut(s) 510, 663, 1658
TauI GCSGC 5 cut(s) 462, 851, 1909, 1912, 2159
TfiI GAWTC 9 cut(s) 434, 558, 711, 908, 991, 1558, 1649, 1802, 1847
Tru1I TTAA 4 cut(s) 1383, 1497, 2057, 2234
Tru9I TTAA 4 cut(s) 1383, 1497, 2057, 2234
TscAI CASTG 7 cut(s) 134, 280, 598, 751, 1336, 1435, 1474
TseFI GTSAC 4 cut(s) 173, 785, 1610, 2458
TseI GCWGC 8 cut(s) 376, 1565, 1673, 1682, 1828, 2092, 2375, 2449
Tsp45I GTSAC 4 cut(s) 173, 785, 1610, 2458
TspDTI ATGAA 7 cut(s) 435, 800, 1085, 1326, 1407, 1955, 2139
TspGWI ACGGA 2 cut(s) 389, 1406
TspRI CASTG 7 cut(s) 134, 280, 598, 751, 1336, 1435, 1474
Van91I CCANNNNNTGG 1 cut(s) 1607
Vha464I CTTAAG 1 cut(s) 2056
VpaK11BI GGWCC 8 cut(s) 1081, 1144, 1414, 1425, 1457, 2009, 2277, 2302
XapI RAATTY 4 cut(s) 203, 218, 262, 1152
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
XhoI CTCGAG 2 cut(s) 1641, 2205
XmaJI CCTAGG 1 cut(s) 1244
XspI CTAG 9 cut(s) 552, 705, 1134, 1245, 1493, 1562, 1571, 1686, 2438
ZraI GACGTC 1 cut(s) 2147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.