Rmu_ssc0000438.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000438.1
OG0000214
Physical Location & Seq
Reverse (-)
68076 .. 68766
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000438.1_g000017.1.cds

Sequence Viewer

Length: 399 bp
atggaaaatgatactaacggtggtggtgccccccaagtctctcaaacaaatgagacaaccgtcgaagctgagggctctgtgcttgaatctgctccacttacccatggtgagccgcgagttgagtttccagattcccctgaggctgaagggacagaccaacctgttgaagatgaagaaactgaggaagctgacctccaagcccatttagcctttgttgagaatgcgattgttgcagaaaaaactcaactcgatgagcctttggctgtttctgaagaaatgggccgcaacctggcccgtatcagagatcaggccactcaggccgaagctggtgccattgcggcgaaacgccacgtggaggaactttgtttgaaattgagctttgtaggccaatctttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.14

Weight (kDa)

4.14

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 26, 329
AccII CGCG 1 cut(s) 115
AciI CCGC 3 cut(s) 113, 283, 338
AcuI CTGAAG 2 cut(s) 165, 291
AcvI CACGTG 1 cut(s) 352
AfiI CCNNNNNNNGG 2 cut(s) 289, 355
AgsI TTSAA 3 cut(s) 86, 167, 370
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 4 cut(s) 68, 188, 326, 378
AluI AGCT 4 cut(s) 68, 188, 326, 378
Alw26I GTCTC 2 cut(s) 43, 47
AoxI GGCC 5 cut(s) 280, 291, 309, 318, 385
AspS9I GGNCC 2 cut(s) 280, 292
AsuHPI GGTGA 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 31
BanI GGYRCC 2 cut(s) 26, 329
BanII GRGCYC 1 cut(s) 77
BbrPI CACGTG 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 43, 47
BglI GCCNNNNNGGC 2 cut(s) 317, 338
BisI GCNGC 3 cut(s) 113, 283, 339
BlsI GCNGC 3 cut(s) 114, 284, 340
Bme1390I CCNGG 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 280, 292
BmiI GGNNCC 2 cut(s) 28, 331
BmrFI CCNGG 1 cut(s) 290
BoxI GACNNNNGTC 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 355
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 289, 355
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 4 cut(s) 60, 129, 171, 329
BseSI GKGCMC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 5 cut(s) 282, 293, 311, 320, 387
BshNI GGYRCC 2 cut(s) 26, 329
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 2 cut(s) 289, 355
BsmAI GTCTC 2 cut(s) 43, 47
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 5 cut(s) 282, 293, 311, 320, 387
Bsp1286I GDGCHC 2 cut(s) 31, 77
Bsp143I GATC 1 cut(s) 304
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 3 cut(s) 113, 283, 338
BspANI GGCC 5 cut(s) 282, 293, 311, 320, 387
BspCNI CTCAG 4 cut(s) 61, 130, 172, 328
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 28, 331
BspT107I GGYRCC 2 cut(s) 26, 329
BsrDI GCAATG 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 2 cut(s) 20, 61
BstBAI YACGTR 1 cut(s) 352
BstDEI CTNAG 4 cut(s) 69, 138, 180, 315
BstDSI CCRYGG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 115
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 43, 47
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 5 cut(s) 206, 230, 317, 338, 384
BstNI CCWGG 1 cut(s) 290
BstPAI GACNNNNGTC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 31
BstUI CGCG 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 5 cut(s) 282, 293, 311, 320, 387
BtgI CCRYGG 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 280, 292
CviAII CATG 1 cut(s) 104
DdeI CTNAG 4 cut(s) 69, 138, 180, 315
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 77
Eco57I CTGAAG 2 cut(s) 165, 291
Eco72I CACGTG 1 cut(s) 352
Eco81I CCTNAGG 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 107
FaiI YATR 1 cut(s) 105
FaqI GGGAC 1 cut(s) 163
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 113, 283, 339
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 113, 283, 339
GluI GCNGC 3 cut(s) 113, 283, 339
HaeIII GGCC 5 cut(s) 282, 293, 311, 320, 387
Hin1II CATG 1 cut(s) 107
HinfI GANTC 2 cut(s) 86, 131
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 271, 302
Hpy188III TCNNGA 1 cut(s) 128
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 2 cut(s) 20, 61
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 230, 317, 338, 384
HpyF3I CTNAG 4 cut(s) 69, 138, 180, 315
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 8 cut(s) 141, 150, 174, 275, 293, 302, 302, 312
MaeII ACGT 1 cut(s) 351
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 3 cut(s) 179, 185, 284
MhlI GDGCHC 2 cut(s) 31, 77
MluCI AATT 1 cut(s) 371
MnlI CCTC 5 cut(s) 64, 133, 175, 203, 349
MspR9I CCNGG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 5 cut(s) 206, 230, 317, 338, 384
NcoI CCATGG 1 cut(s) 103
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 28, 331
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 86, 131
PkrI GCNGC 3 cut(s) 114, 284, 340
PmaCI CACGTG 1 cut(s) 352
PmlI CACGTG 1 cut(s) 352
Ppu21I YACGTR 1 cut(s) 352
PshAI GACNNNNGTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 288
PspCI CACGTG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 28, 331
PspPI GGNCC 2 cut(s) 280, 292
SatI GCNGC 3 cut(s) 113, 283, 339
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 2 cut(s) 280, 292
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 2 cut(s) 31, 77
SetI ASST 8 cut(s) 70, 163, 190, 195, 291, 328, 354, 380
SfiI GGCCNNNNNGGCC 1 cut(s) 317
Sse9I AATT 1 cut(s) 371
SsiI CCGC 3 cut(s) 113, 283, 338
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 20, 61
TaiI ACGT 1 cut(s) 354
TaqI TCGA 2 cut(s) 63, 249
TasI AATT 1 cut(s) 371
TauI GCSGC 3 cut(s) 115, 285, 341
TfiI GAWTC 2 cut(s) 86, 131
TspDTI ATGAA 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.