Rmu_sc0002654.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002654.1
OG0000214
Physical Location & Seq
Reverse (-)
19884 .. 21479
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002654.1_g000003.1.cds

Sequence Viewer

Length: 822 bp
atgagggtgttggaggtaactcctccttctgctgtggatgaggctaagatggtacttcacgaacatctgggtcctcaggtattggagactgacatcctcctgcgagtcttggaagctctaaggtatcttcaccaggagaaggttttgactctgtgtcaatttagtgctatcgactctctgctgaatgaaattgatatggcccgccgacgtcaatcggtcgcgaacactcaagctcacgacgctcaagaggctttgaatgatgtctctccagaaatggacatctcccgtgatattttaaatgaacgatccatccgcctgcgggaactacaaatccaaaggtccaacttcaaacttcagatcgaggaactccaagcccatttagcctttgttgagaatgtgattgttgcagaagaagctcaactcgatgagcctttggctgcttctgaagaaatgggccgcaacctggcccgtatcagagatcgggccactcaggccgaagctggtgctattgaggcgaaacgccacgtggaggaactttgcaatcccttgtttcggccttctggaaatctggatgaaaatgccaggcttcagattggtttagaaacgcgagggggctccgagtgtgggatcaacgatcatgcgagaatgggttcaagctacaaaatggatgttcctgtacttcacgtccagctaatggtggttaccaaggctagagagggtgcagagactcaagctgatattcggttccttcactctctgcctctccaggagataatggcgcggctcaacccggcattggattccatagctgcttctaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.6

Weight (kDa)

5.07

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 211
AccB7I CCANNNNNTGG 1 cut(s) 694
AccII CGCG 3 cut(s) 221, 607, 781
AciI CCGC 5 cut(s) 202, 313, 319, 457, 781
AclWI GGATC 2 cut(s) 300, 635
AcuI CTGAAG 3 cut(s) 338, 465, 572
AcvI CACGTG 1 cut(s) 526
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 2 cut(s) 54, 678
AfiI CCNNNNNNNGG 8 cut(s) 139, 319, 463, 529, 552, 624, 694, 796
AgsI TTSAA 3 cut(s) 256, 349, 654
AhdI GACNNNNNGTC 1 cut(s) 153
AjiI CACGTC 1 cut(s) 685
AjnI CCWGG 4 cut(s) 132, 462, 581, 765
AloI GAACNNNNNNTCC 4 cut(s) 294, 315, 326, 347
AluBI AGCT 8 cut(s) 116, 233, 416, 500, 657, 691, 734, 809
AluI AGCT 8 cut(s) 116, 233, 416, 500, 657, 691, 734, 809
Alw26I GTCTC 3 cut(s) 80, 268, 719
AlwI GGATC 2 cut(s) 300, 635
AoxI GGCC 6 cut(s) 198, 454, 465, 483, 492, 554
ApeKI GCWGC 2 cut(s) 437, 809
Asp700I GAANNNNTTC 1 cut(s) 649
AspLEI GCGC 1 cut(s) 781
AspS9I GGNCC 6 cut(s) 71, 199, 339, 454, 466, 483
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 71, 339
AxyI CCTNAGG 1 cut(s) 75
BanII GRGCYC 1 cut(s) 617
BbrPI CACGTG 1 cut(s) 526
BbvI GCAGC 2 cut(s) 424, 796
BccI CCATC 2 cut(s) 43, 317
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 4 cut(s) 134, 464, 583, 767
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 3 cut(s) 80, 268, 719
BfaI CTAG 1 cut(s) 711
BglI GCCNNNNNGGC 1 cut(s) 491
BisI GCNGC 4 cut(s) 438, 457, 782, 810
BlsI GCNGC 4 cut(s) 439, 458, 783, 811
Bme1390I CCNGG 5 cut(s) 134, 464, 583, 767, 791
Bme18I GGWCC 2 cut(s) 71, 339
BmeRI GACNNNNNGTC 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 685
BmgT120I GGNCC 6 cut(s) 71, 199, 339, 454, 466, 483
BmiI GGNNCC 3 cut(s) 72, 616, 746
BmrFI CCNGG 5 cut(s) 134, 464, 583, 767, 791
BpmI CTGGAG 2 cut(s) 252, 749
BpuEI CTTGAG 3 cut(s) 213, 228, 714
BpuMI CCSGG 1 cut(s) 791
BsaAI YACGTR 1 cut(s) 526
BsaHI GRCGYC 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 705
Bsc4I CCNNNNNNNGG 8 cut(s) 139, 319, 463, 529, 552, 624, 694, 796
Bse21I CCTNAGG 1 cut(s) 75
BseBI CCWGG 4 cut(s) 134, 464, 583, 767
BseDI CCNNGG 1 cut(s) 705
BseGI GGATG 5 cut(s) 43, 93, 309, 577, 673
BseLI CCNNNNNNNGG 8 cut(s) 139, 319, 463, 529, 552, 624, 694, 796
BseMII CTCAG 2 cut(s) 89, 503
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 2 cut(s) 424, 796
BsgI GTGCAG 1 cut(s) 741
Bsh1236I CGCG 3 cut(s) 221, 607, 781
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 6 cut(s) 200, 456, 467, 485, 494, 556
BsiEI CGRYCG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 791
BslI CCNNNNNNNGG 8 cut(s) 139, 319, 463, 529, 552, 624, 694, 796
BsmAI GTCTC 3 cut(s) 80, 268, 719
BsnI GGCC 6 cut(s) 200, 456, 467, 485, 494, 556
Bsp1286I GDGCHC 1 cut(s) 617
Bsp143I GATC 5 cut(s) 305, 357, 478, 627, 634
Bsp68I TCGCGA 1 cut(s) 221
BspACI CCGC 5 cut(s) 202, 313, 319, 457, 781
BspANI GGCC 6 cut(s) 200, 456, 467, 485, 494, 556
BspCNI CTCAG 2 cut(s) 88, 502
BspFNI CGCG 3 cut(s) 221, 607, 781
BspLI GGNNCC 3 cut(s) 72, 616, 746
BspPI GGATC 2 cut(s) 300, 635
BssECI CCNNGG 1 cut(s) 705
BssMI GATC 5 cut(s) 305, 357, 478, 627, 634
BssNI GRCGYC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 705
Bst2UI CCWGG 4 cut(s) 134, 464, 583, 767
BstACI GRCGYC 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 526
BstC8I GCNNGC 2 cut(s) 202, 317
BstDEI CTNAG 4 cut(s) 45, 75, 119, 489
BstEII GGTNACC 1 cut(s) 700
BstF5I GGATG 5 cut(s) 43, 93, 309, 577, 673
BstFNI CGCG 3 cut(s) 221, 607, 781
BstHHI GCGC 1 cut(s) 781
BstKTI GATC 5 cut(s) 308, 360, 481, 630, 637
BstMAI GTCTC 3 cut(s) 80, 268, 719
BstMBI GATC 5 cut(s) 305, 357, 478, 627, 634
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 6 cut(s) 239, 248, 380, 413, 491, 512
BstNI CCWGG 4 cut(s) 134, 464, 583, 767
BstPI GGTNACC 1 cut(s) 700
BstSCI CCNGG 5 cut(s) 132, 462, 581, 765, 789
BstUI CGCG 3 cut(s) 221, 607, 781
BstV1I GCAGC 2 cut(s) 424, 796
Bsu36I CCTNAGG 1 cut(s) 75
BsuRI GGCC 6 cut(s) 200, 456, 467, 485, 494, 556
BtrI CACGTC 1 cut(s) 685
BtsCI GGATG 5 cut(s) 43, 93, 309, 577, 673
BtuMI TCGCGA 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 202, 317
CfoI GCGC 1 cut(s) 781
Cfr13I GGNCC 6 cut(s) 71, 199, 339, 454, 466, 483
CseI GACGC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 53, 677
CviAII CATG 1 cut(s) 638
CviQI GTAC 2 cut(s) 53, 677
DdeI CTNAG 4 cut(s) 45, 75, 119, 489
DpnI GATC 5 cut(s) 307, 359, 480, 629, 636
DpnII GATC 5 cut(s) 305, 357, 478, 627, 634
DraI TTTAAA 1 cut(s) 297
DriI GACNNNNNGTC 1 cut(s) 153
Eam1105I GACNNNNNGTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 705
Eco24I GRGCYC 1 cut(s) 617
Eco47I GGWCC 2 cut(s) 71, 339
Eco57I CTGAAG 3 cut(s) 338, 465, 572
Eco72I CACGTG 1 cut(s) 526
Eco81I CCTNAGG 1 cut(s) 75
Eco91I GGTNACC 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 71
EcoO65I GGTNACC 1 cut(s) 700
EcoRII CCWGG 4 cut(s) 132, 462, 581, 765
EcoT14I CCWWGG 1 cut(s) 705
EcoT38I GRGCYC 1 cut(s) 617
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 1 cut(s) 641
FaiI YATR 3 cut(s) 197, 639, 806
FatI CATG 1 cut(s) 637
FauI CCCGC 2 cut(s) 209, 312
Fnu4HI GCNGC 4 cut(s) 438, 457, 782, 810
FokI GGATG 5 cut(s) 50, 80, 296, 584, 680
FriOI GRGCYC 1 cut(s) 617
Fsp4HI GCNGC 4 cut(s) 438, 457, 782, 810
FspBI CTAG 1 cut(s) 711
GlaI GCGC 1 cut(s) 780
GluI GCNGC 4 cut(s) 438, 457, 782, 810
GsuI CTGGAG 2 cut(s) 252, 749
HaeIII GGCC 6 cut(s) 200, 456, 467, 485, 494, 556
HapII CCGG 1 cut(s) 791
HgaI GACGC 1 cut(s) 248
HhaI GCGC 1 cut(s) 781
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 1 cut(s) 641
Hin6I GCGC 1 cut(s) 779
HinP1I GCGC 1 cut(s) 779
HinfI GANTC 5 cut(s) 105, 148, 173, 727, 800
HpaII CCGG 1 cut(s) 791
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 5 cut(s) 357, 445, 476, 591, 619
Hpy188III TCNNGA 7 cut(s) 59, 220, 236, 245, 269, 561, 569
Hpy99I CGWCG 2 cut(s) 210, 242
HpyAV CCTTC 4 cut(s) 36, 133, 567, 758
HpyCH4IV ACGT 3 cut(s) 208, 525, 684
HpyCH4V TGCA 3 cut(s) 407, 540, 722
HpyF10VI GCNNNNNNNGC 6 cut(s) 239, 248, 380, 413, 491, 512
HpyF3I CTNAG 4 cut(s) 45, 75, 119, 489
HpySE526I ACGT 3 cut(s) 208, 525, 684
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 1 cut(s) 641
HspAI GCGC 1 cut(s) 779
Kzo9I GATC 5 cut(s) 305, 357, 478, 627, 634
LmnI GCTCC 1 cut(s) 620
Lsp1109I GCAGC 2 cut(s) 424, 796
MaeI CTAG 1 cut(s) 711
MaeII ACGT 3 cut(s) 208, 525, 684
MaeIII GTNAC 2 cut(s) 16, 700
MalI GATC 5 cut(s) 307, 359, 480, 629, 636
MboI GATC 5 cut(s) 305, 357, 478, 627, 634
MboII GAAGA 3 cut(s) 119, 422, 458
MhlI GDGCHC 1 cut(s) 617
MluCI AATT 3 cut(s) 158, 189, 817
MlyI GAGTC 4 cut(s) 114, 142, 167, 721
MmeI TCCRAC 1 cut(s) 366
MroXI GAANNNNTTC 1 cut(s) 649
MseI TTAA 1 cut(s) 296
MspI CCGG 1 cut(s) 791
MspR9I CCNGG 5 cut(s) 134, 464, 583, 767, 791
MvaI CCWGG 4 cut(s) 134, 464, 583, 767
MvnI CGCG 3 cut(s) 221, 607, 781
MwoI GCNNNNNNNGC 6 cut(s) 239, 248, 380, 413, 491, 512
NciI CCSGG 1 cut(s) 791
NdeII GATC 5 cut(s) 305, 357, 478, 627, 634
NlaIII CATG 1 cut(s) 641
NlaIV GGNNCC 3 cut(s) 72, 616, 746
NruI TCGCGA 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 649
PfeI GAWTC 1 cut(s) 800
PflMI CCANNNNNTGG 1 cut(s) 694
PfoI TCCNGGA 1 cut(s) 765
PkrI GCNGC 4 cut(s) 439, 458, 783, 811
PleI GAGTC 4 cut(s) 113, 142, 167, 721
PmaCI CACGTG 1 cut(s) 526
PmlI CACGTG 1 cut(s) 526
PpsI GAGTC 4 cut(s) 113, 142, 167, 721
Ppu21I YACGTR 1 cut(s) 526
PpuMI RGGWCCY 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 4 cut(s) 132, 462, 581, 765
PspCI CACGTG 1 cut(s) 526
PspEI GGTNACC 1 cut(s) 700
PspGI CCWGG 4 cut(s) 132, 462, 581, 765
PspN4I GGNNCC 3 cut(s) 72, 616, 746
PspPI GGNCC 6 cut(s) 71, 199, 339, 454, 466, 483
PspPPI RGGWCCY 1 cut(s) 71
RruI TCGCGA 1 cut(s) 221
RsaI GTAC 2 cut(s) 54, 678
RsaNI GTAC 2 cut(s) 53, 677
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 4 cut(s) 438, 457, 782, 810
Sau3AI GATC 5 cut(s) 305, 357, 478, 627, 634
Sau96I GGNCC 6 cut(s) 71, 199, 339, 454, 466, 483
SchI GAGTC 4 cut(s) 114, 142, 167, 721
ScrFI CCNGG 5 cut(s) 134, 464, 583, 767, 791
SduI GDGCHC 1 cut(s) 617
SfiI GGCCNNNNNGGCC 1 cut(s) 491
SinI GGWCC 2 cut(s) 71, 339
SmlI CTYRAG 3 cut(s) 228, 243, 729
SmoI CTYRAG 3 cut(s) 228, 243, 729
Sse9I AATT 3 cut(s) 158, 189, 817
SsiI CCGC 5 cut(s) 202, 313, 319, 457, 781
SspMI CTAG 1 cut(s) 711
StyD4I CCNGG 5 cut(s) 132, 462, 581, 765, 789
StyI CCWWGG 1 cut(s) 705
TaiI ACGT 3 cut(s) 211, 528, 687
TaqI TCGA 3 cut(s) 171, 360, 423
TaqII GACCGA 1 cut(s) 205
TasI AATT 3 cut(s) 158, 189, 817
TatI WGTACW 1 cut(s) 676
TauI GCSGC 2 cut(s) 459, 784
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TseI GCWGC 2 cut(s) 437, 809
TspDTI ATGAA 3 cut(s) 201, 315, 588
Van91I CCANNNNNTGG 1 cut(s) 694
VpaK11BI GGWCC 2 cut(s) 71, 339
XmnI GAANNNNTTC 1 cut(s) 649
XspI CTAG 1 cut(s) 711
ZraI GACGTC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.