Rmu_sc0010817.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010817.1
OG0000214
Physical Location & Seq
Reverse (-)
1 .. 1558
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010817.1_g000001.1.cds

Sequence Viewer

Length: 859 bp
atgacgacagagattctcgcggtactagagattcaagaggtgaatgaggcagggcctcttcctgttggtgactacgtaccggatactgacccgacagctcgagaggtaagccactatttggccaatactttccatttccctttagatccaaccctgctctctgacatttctgaacctgatcaggattctgtttgtatcgaggaggtggcaacaaacactgagggtcctatcggcgggacagtcgccccagagatggaaaatgatactgacggtgggggttccccccaagtctcgcaaataaatgagacaaccgtcgaagccgagggccctgtgcttgaatctgctctacatgcccatggtgaaccgcgagttgagtttccagattcccctgcggatgcagggatagaccaacctattgaagatgaagaaactgaagaggctgtccacccttttgcattggtggttggtgatcctgtggcgcattcgccacctcctcctcctaccagattcgagagattgatgagggtgttggagactgacatcctcccacgagtcttggaagctctaaggtatcttcaccaggagaaggctcacgacgctcaagaggctttgaatagtgtctctcaagaaatggacatctcccgcgatattttaaatgaacgatccatccgcctgcgggaactacaaatccaaaggtccgacttcagacttcaaatcgaggtcctccaagcccatttagcctttgttgagaatgcgattgttgcagaagaagctcaactcgatgagcctttgactgcttctgaagaaatgggtggcaacctggcccgtatcagagatcgggccactcaggccgaagctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

31.38

Weight (kDa)

4.2

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 118
AccII CGCG 3 cut(s) 20, 367, 645
AciI CCGC 7 cut(s) 20, 234, 365, 392, 643, 670, 676
AclWI GGATC 3 cut(s) 140, 464, 657
AcoI YGGCCR 1 cut(s) 120
AcuI CTGAAG 3 cut(s) 453, 688, 822
AfaI GTAC 2 cut(s) 24, 78
AfiI CCNNNNNNNGG 5 cut(s) 118, 233, 253, 586, 676
AgsI TTSAA 5 cut(s) 35, 338, 419, 613, 713
AjnI CCWGG 2 cut(s) 579, 819
AloI GAACNNNNNNTCC 4 cut(s) 651, 672, 683, 704
AluBI AGCT 4 cut(s) 98, 563, 773, 857
AluI AGCT 4 cut(s) 98, 563, 773, 857
Alw26I GTCTC 4 cut(s) 295, 299, 527, 625
AlwI GGATC 3 cut(s) 140, 464, 657
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 6 cut(s) 53, 120, 325, 822, 840, 849
ApaI GGGCCC 1 cut(s) 329
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 8 cut(s) 53, 224, 325, 326, 696, 721, 823, 840
AsuHPI GGTGA 5 cut(s) 52, 80, 371, 479, 569
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 3 cut(s) 224, 696, 721
BaeGI GKGCMC 1 cut(s) 329
BalI TGGCCA 1 cut(s) 122
BanII GRGCYC 1 cut(s) 329
BauI CACGAG 1 cut(s) 549
BccI CCATC 2 cut(s) 247, 674
BciT130I CCWGG 2 cut(s) 581, 821
BciVI GTATCC 1 cut(s) 76
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 4 cut(s) 295, 299, 527, 625
BfaI CTAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 76
BglI GCCNNNNNGGC 1 cut(s) 848
Bme1390I CCNGG 2 cut(s) 581, 821
Bme18I GGWCC 3 cut(s) 224, 696, 721
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 8 cut(s) 53, 224, 325, 326, 696, 721, 823, 840
BmiI GGNNCC 3 cut(s) 225, 280, 327
BmrFI CCNGG 2 cut(s) 581, 821
BmsI GCATC 1 cut(s) 385
BoxI GACNNNNGTC 1 cut(s) 311
BpuEI CTTGAG 2 cut(s) 585, 609
BsaAI YACGTR 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 321, 355
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 233, 253, 586, 676
BseBI CCWGG 2 cut(s) 581, 821
BseDI CCNNGG 2 cut(s) 321, 355
BseGI GGATG 3 cut(s) 400, 540, 666
BseLI CCNNNNNNNGG 5 cut(s) 118, 233, 253, 586, 676
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 3 cut(s) 215, 483, 486
BseSI GKGCMC 1 cut(s) 329
Bsh1236I CGCG 3 cut(s) 20, 367, 645
BshFI GGCC 6 cut(s) 55, 122, 327, 824, 842, 851
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 5 cut(s) 118, 233, 253, 586, 676
BsmAI GTCTC 4 cut(s) 295, 299, 527, 625
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 2 cut(s) 481, 757
BsnI GGCC 6 cut(s) 55, 122, 327, 824, 842, 851
BsoBI CYCGRG 1 cut(s) 99
Bsp120I GGGCCC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 5 cut(s) 145, 178, 469, 662, 835
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 7 cut(s) 20, 234, 365, 392, 643, 670, 676
BspANI GGCC 6 cut(s) 55, 122, 327, 824, 842, 851
BspCNI CTCAG 2 cut(s) 211, 859
BspFNI CGCG 3 cut(s) 20, 367, 645
BspLI GGNNCC 3 cut(s) 225, 280, 327
BspPI GGATC 3 cut(s) 140, 464, 657
BssECI CCNNGG 2 cut(s) 321, 355
BssMI GATC 5 cut(s) 145, 178, 469, 662, 835
BssSI CACGAG 1 cut(s) 549
BssT1I CCWWGG 1 cut(s) 355
Bst2BI CACGAG 1 cut(s) 549
Bst2UI CCWGG 2 cut(s) 581, 821
Bst4CI ACNGT 3 cut(s) 241, 272, 313
Bst6I CTCTTC 2 cut(s) 63, 429
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 674
BstDEI CTNAG 3 cut(s) 219, 566, 846
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 3 cut(s) 400, 540, 666
BstFNI CGCG 3 cut(s) 20, 367, 645
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 5 cut(s) 148, 181, 472, 665, 838
BstMAI GTCTC 4 cut(s) 295, 299, 527, 625
BstMBI GATC 5 cut(s) 145, 178, 469, 662, 835
BstMWI GCNNNNNNNGC 7 cut(s) 350, 596, 605, 737, 761, 770, 848
BstNI CCWGG 2 cut(s) 581, 821
BstNSI RCATGY 1 cut(s) 353
BstPAI GACNNNNGTC 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 579, 819
BstSLI GKGCMC 1 cut(s) 329
BstSNI TACGTA 1 cut(s) 76
BstUI CGCG 3 cut(s) 20, 367, 645
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuI GTATCC 1 cut(s) 76
BsuRI GGCC 6 cut(s) 55, 122, 327, 824, 842, 851
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 3 cut(s) 400, 540, 666
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 674
CfoI GCGC 1 cut(s) 481
Cfr13I GGNCC 8 cut(s) 53, 224, 325, 326, 696, 721, 823, 840
CseI GACGC 1 cut(s) 605
Csp6I GTAC 2 cut(s) 23, 77
CspCI CAANNNNNGTGG 2 cut(s) 537, 572
CviAII CATG 2 cut(s) 350, 356
CviQI GTAC 2 cut(s) 23, 77
DdeI CTNAG 3 cut(s) 219, 566, 846
DpnI GATC 5 cut(s) 147, 180, 471, 664, 837
DpnII GATC 5 cut(s) 145, 178, 469, 662, 835
DraI TTTAAA 1 cut(s) 654
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 63, 429
EarI CTCTTC 2 cut(s) 63, 429
EciI GGCGGA 1 cut(s) 659
Eco105I TACGTA 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 3 cut(s) 224, 696, 721
Eco57I CTGAAG 3 cut(s) 453, 688, 822
Eco88I CYCGRG 1 cut(s) 99
EcoO109I RGGNCCY 5 cut(s) 53, 224, 325, 326, 721
EcoRII CCWGG 2 cut(s) 579, 819
EcoT14I CCWWGG 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 2 cut(s) 353, 359
FaiI YATR 2 cut(s) 351, 357
FaqI GGGAC 1 cut(s) 250
FatI CATG 2 cut(s) 349, 355
FauI CCCGC 3 cut(s) 227, 650, 669
FbaI TGATCA 1 cut(s) 178
FokI GGATG 3 cut(s) 407, 527, 653
FriOI GRGCYC 1 cut(s) 329
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 480
HaeIII GGCC 6 cut(s) 55, 122, 327, 824, 842, 851
HapII CCGG 1 cut(s) 80
HgaI GACGC 1 cut(s) 605
HhaI GCGC 1 cut(s) 481
Hin1II CATG 2 cut(s) 353, 359
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HinfI GANTC 7 cut(s) 13, 31, 185, 338, 383, 507, 552
HpaII CCGG 1 cut(s) 80
HphI GGTGA 5 cut(s) 52, 80, 371, 479, 569
Hpy166II GTNNAC 2 cut(s) 362, 445
Hpy188I TCNGA 6 cut(s) 163, 172, 700, 707, 802, 833
Hpy188III TCNNGA 8 cut(s) 35, 101, 182, 380, 511, 593, 602, 626
Hpy8I GTNNAC 2 cut(s) 362, 445
Hpy99I CGWCG 2 cut(s) 317, 599
HpyAV CCTTC 1 cut(s) 580
HpyCH4III ACNGT 3 cut(s) 241, 272, 313
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 3 cut(s) 398, 455, 764
HpyF10VI GCNNNNNNNGC 7 cut(s) 350, 596, 605, 737, 761, 770, 848
HpyF3I CTNAG 3 cut(s) 219, 566, 846
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 353, 359
HspAI GCGC 1 cut(s) 479
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 5 cut(s) 145, 178, 469, 662, 835
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 68
MalI GATC 5 cut(s) 147, 180, 471, 664, 837
MboI GATC 5 cut(s) 145, 178, 469, 662, 835
MboII GAAGA 7 cut(s) 50, 431, 437, 446, 566, 779, 815
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 329
MlsI TGGCCA 1 cut(s) 122
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 1 cut(s) 561
MmeI TCCRAC 3 cut(s) 173, 510, 723
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 1 cut(s) 653
MslI CAYNNNNRTG 1 cut(s) 354
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 581, 821
Mva1269I GAATGC 2 cut(s) 481, 757
MvaI CCWGG 2 cut(s) 581, 821
MvnI CGCG 3 cut(s) 20, 367, 645
MwoI GCNNNNNNNGC 7 cut(s) 350, 596, 605, 737, 761, 770, 848
NcoI CCATGG 1 cut(s) 355
NdeII GATC 5 cut(s) 145, 178, 469, 662, 835
NlaIII CATG 2 cut(s) 353, 359
NlaIV GGNNCC 3 cut(s) 225, 280, 327
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 1 cut(s) 353
PaeR7I CTCGAG 1 cut(s) 99
PctI GAATGC 2 cut(s) 481, 757
PfeI GAWTC 6 cut(s) 13, 31, 185, 338, 383, 507
PflMI CCANNNNNTGG 1 cut(s) 118
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
Ppu21I YACGTR 1 cut(s) 76
PpuMI RGGWCCY 2 cut(s) 224, 721
PshAI GACNNNNGTC 1 cut(s) 311
Psp5II RGGWCCY 2 cut(s) 224, 721
Psp6I CCWGG 2 cut(s) 579, 819
PspGI CCWGG 2 cut(s) 579, 819
PspN4I GGNNCC 3 cut(s) 225, 280, 327
PspOMI GGGCCC 1 cut(s) 325
PspPI GGNCC 8 cut(s) 53, 224, 325, 326, 696, 721, 823, 840
PspPPI RGGWCCY 2 cut(s) 224, 721
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 2 cut(s) 24, 78
RsaNI GTAC 2 cut(s) 23, 77
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 1 cut(s) 653
Sau3AI GATC 5 cut(s) 145, 178, 469, 662, 835
Sau96I GGNCC 8 cut(s) 53, 224, 325, 326, 696, 721, 823, 840
SchI GAGTC 1 cut(s) 561
ScrFI CCNGG 2 cut(s) 581, 821
SduI GDGCHC 1 cut(s) 329
SfaNI GCATC 1 cut(s) 385
SfiI GGCCNNNNNGGCC 1 cut(s) 848
Sfr274I CTCGAG 1 cut(s) 99
SinI GGWCC 3 cut(s) 224, 696, 721
SlaI CTCGAG 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 354
SmlI CTYRAG 3 cut(s) 99, 600, 624
SmoI CTYRAG 3 cut(s) 99, 600, 624
SnaBI TACGTA 1 cut(s) 76
SsiI CCGC 7 cut(s) 20, 234, 365, 392, 643, 670, 676
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 579, 819
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 3 cut(s) 241, 272, 313
TaiI ACGT 1 cut(s) 78
TaqI TCGA 6 cut(s) 100, 198, 315, 510, 717, 780
TfiI GAWTC 6 cut(s) 13, 31, 185, 338, 383, 507
Tru1I TTAA 1 cut(s) 653
Tru9I TTAA 1 cut(s) 653
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 438, 672
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 118
VpaK11BI GGWCC 3 cut(s) 224, 696, 721
XceI RCATGY 1 cut(s) 353
XhoI CTCGAG 1 cut(s) 99
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.