Rroxscaffold_2G00077360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000214
Physical Location & Seq
Forward (+)
911022 .. 911998
977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077360.1

Sequence Viewer

Length: 528 bp
ATGATTCGCCAACTACTACACCTCTTGGGAAAGACTCACCCCGCCGGCTCGCCCCTTCCGAGCCCATTTACTCCGGTGGAAATTCCCCCTTGGGTGAGGGCGTTGTATCCCCTTAACGAAGCCGCCGATGATTATGCCGCTTGGTGGAAAGAAGTATCGGTGAACCGTCGGGACTTCCCGCATGACAAACTCTTCGCATTAATCTTCCGCGACCTAAGTAGTCTTGGTGCCGTGGACCGCGAGATTGTTGAACGCTTCCCAAATCCCACGGAGGAATCCCCGCTCTCGCCCCGCCCGCCGGACGACCGCAAACGGGGATCCAAATTCGCGAACCAATCGCGACGAAAGTTCCGTGCGTCGAGGACCACCGGTCCATCTTTTCCAAGCAAAACTGGACCTTTAACAGCTGCGCAAAAGAACCGGTTCCCCTACAAGTTCGAGGCATCGGCGAGAAGCGCGGCGTCTTTTCCTTCTCCCCGATCCTCGGATCCACCGCAGATCTGTCGAACCAATTCCAATCTCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.75

Weight (kDa)

10.4

Isoelectric Point (pI)

62.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 227
AccBSI CCGCTC 1 cut(s) 283
AccII CGCG 5 cut(s) 210, 240, 329, 340, 458
AclWI GGATC 5 cut(s) 312, 325, 474, 482, 495
AcsI RAATTY 2 cut(s) 81, 323
AcyI GRCGYC 1 cut(s) 461
AfiI CCNNNNNNNGG 4 cut(s) 144, 298, 313, 484
AgeI ACCGGT 2 cut(s) 368, 420
AgsI TTSAA 1 cut(s) 251
AhdI GACNNNNNGTC 1 cut(s) 369
AluBI AGCT 1 cut(s) 407
AluI AGCT 1 cut(s) 407
AlwI GGATC 5 cut(s) 312, 325, 474, 482, 495
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 2 cut(s) 81, 323
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AseI ATTAAT 1 cut(s) 200
AsiGI ACCGGT 2 cut(s) 368, 420
Asp700I GAANNNNTTC 2 cut(s) 422, 511
AspLEI GCGC 2 cut(s) 412, 458
AspS9I GGNCC 4 cut(s) 235, 363, 371, 395
AsuHPI GGTGA 3 cut(s) 29, 106, 172
AvaII GGWCC 4 cut(s) 235, 363, 371, 395
BamHI GGATCC 2 cut(s) 317, 487
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 394
BccI CCATC 1 cut(s) 382
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 4 cut(s) 116, 150, 485, 519
BciVI GTATCC 1 cut(s) 117
BfuI GTATCC 1 cut(s) 117
BglII AGATCT 1 cut(s) 498
BisI GCNGC 4 cut(s) 123, 138, 408, 459
BlsI GCNGC 4 cut(s) 124, 139, 409, 460
Bme18I GGWCC 4 cut(s) 235, 363, 371, 395
BmeRI GACNNNNNGTC 1 cut(s) 369
BmgT120I GGNCC 4 cut(s) 235, 363, 371, 395
BmiI GGNNCC 4 cut(s) 229, 319, 425, 489
BmsI GCATC 1 cut(s) 452
BsaHI GRCGYC 1 cut(s) 461
BsaJI CCNNGG 4 cut(s) 89, 231, 267, 483
BsaWI WCCGGW 3 cut(s) 73, 368, 420
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 298, 313, 484
Bse118I RCCGGY 3 cut(s) 44, 368, 420
Bse1I ACTGG 1 cut(s) 397
BseDI CCNNGG 4 cut(s) 89, 231, 267, 483
BseLI CCNNNNNNNGG 4 cut(s) 144, 298, 313, 484
BseNI ACTGG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 394
Bsh1236I CGCG 5 cut(s) 210, 240, 329, 340, 458
Bsh1285I CGRYCG 1 cut(s) 307
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 2 cut(s) 368, 420
BsiEI CGRYCG 1 cut(s) 307
BsiSI CCGG 5 cut(s) 45, 74, 299, 369, 421
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 4 cut(s) 144, 298, 313, 484
BsmFI GGGAC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 4 cut(s) 317, 479, 487, 498
Bsp68I TCGCGA 2 cut(s) 329, 340
BspFNI CGCG 5 cut(s) 210, 240, 329, 340, 458
BspLI GGNNCC 4 cut(s) 229, 319, 425, 489
BspPI GGATC 5 cut(s) 312, 325, 474, 482, 495
BspT107I GGYRCC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 283
BsrFI RCCGGY 3 cut(s) 44, 368, 420
BsrI ACTGG 1 cut(s) 397
BssAI RCCGGY 3 cut(s) 44, 368, 420
BssECI CCNNGG 4 cut(s) 89, 231, 267, 483
BssMI GATC 4 cut(s) 317, 479, 487, 498
BssNI GRCGYC 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 461
BstC8I GCNNGC 3 cut(s) 46, 50, 296
BstDEI CTNAG 1 cut(s) 215
BstDSI CCRYGG 2 cut(s) 231, 267
BstFNI CGCG 5 cut(s) 210, 240, 329, 340, 458
BstHHI GCGC 2 cut(s) 412, 458
BstKTI GATC 4 cut(s) 320, 482, 490, 501
BstMBI GATC 4 cut(s) 317, 479, 487, 498
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 295, 455
BstUI CGCG 5 cut(s) 210, 240, 329, 340, 458
BstV1I GCAGC 1 cut(s) 394
BstX2I RGATCY 3 cut(s) 317, 487, 498
BstYI RGATCY 3 cut(s) 317, 487, 498
BsuI GTATCC 1 cut(s) 117
BtgI CCRYGG 2 cut(s) 231, 267
BtuMI TCGCGA 2 cut(s) 329, 340
Cac8I GCNNGC 3 cut(s) 46, 50, 296
CfoI GCGC 2 cut(s) 412, 458
Cfr10I RCCGGY 3 cut(s) 44, 368, 420
Cfr13I GGNCC 4 cut(s) 235, 363, 371, 395
CseI GACGC 2 cut(s) 345, 450
CspAI ACCGGT 2 cut(s) 368, 420
CviAII CATG 1 cut(s) 182
CviJI RGCY 4 cut(s) 48, 63, 122, 407
CviKI_1 RGCY 4 cut(s) 48, 63, 122, 407
DdeI CTNAG 1 cut(s) 215
DpnI GATC 4 cut(s) 319, 481, 489, 500
DpnII GATC 4 cut(s) 317, 479, 487, 498
DriI GACNNNNNGTC 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 197
Eam1105I GACNNNNNGTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 4 cut(s) 235, 363, 371, 395
EcoT14I CCWWGG 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 1 cut(s) 185
FaiI YATR 2 cut(s) 135, 183
FaqI GGGAC 1 cut(s) 185
FatI CATG 1 cut(s) 181
FauI CCCGC 5 cut(s) 49, 186, 288, 299, 303
Fnu4HI GCNGC 4 cut(s) 123, 138, 408, 459
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 4 cut(s) 123, 138, 408, 459
FspI TGCGCA 1 cut(s) 411
GlaI GCGC 2 cut(s) 411, 457
GluI GCNGC 4 cut(s) 123, 138, 408, 459
HapII CCGG 5 cut(s) 45, 74, 299, 369, 421
HgaI GACGC 2 cut(s) 345, 450
HhaI GCGC 2 cut(s) 412, 458
Hin1I GRCGYC 1 cut(s) 461
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 2 cut(s) 410, 456
HinP1I GCGC 2 cut(s) 410, 456
HinfI GANTC 3 cut(s) 4, 34, 275
HpaII CCGG 5 cut(s) 45, 74, 299, 369, 421
HphI GGTGA 3 cut(s) 29, 106, 172
Hpy166II GTNNAC 2 cut(s) 163, 235
Hpy188I TCNGA 3 cut(s) 60, 487, 524
Hpy188III TCNNGA 3 cut(s) 170, 328, 339
Hpy8I GTNNAC 2 cut(s) 163, 235
Hpy99I CGWCG 3 cut(s) 171, 345, 361
HpyAV CCTTC 2 cut(s) 65, 480
HpyCH4III ACNGT 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 455
HpyF3I CTNAG 1 cut(s) 215
Hsp92I GRCGYC 1 cut(s) 461
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 2 cut(s) 410, 456
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Kzo9I GATC 4 cut(s) 317, 479, 487, 498
LpnPI CCDG 6 cut(s) 58, 87, 312, 378, 382, 434
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 1 cut(s) 452
MalI GATC 4 cut(s) 319, 481, 489, 500
MbiI CCGCTC 1 cut(s) 283
MboI GATC 4 cut(s) 317, 479, 487, 498
MboII GAAGA 2 cut(s) 184, 196
MflI RGATCY 3 cut(s) 317, 487, 498
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 3 cut(s) 81, 323, 511
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 6 cut(s) 32, 90, 265, 354, 433, 493
MroNI GCCGGC 1 cut(s) 44
MroXI GAANNNNTTC 2 cut(s) 422, 511
MseI TTAA 3 cut(s) 114, 200, 401
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 5 cut(s) 45, 74, 299, 369, 421
MvnI CGCG 5 cut(s) 210, 240, 329, 340, 458
MwoI GCNNNNNNNGC 2 cut(s) 295, 455
NaeI GCCGGC 1 cut(s) 46
NdeII GATC 4 cut(s) 317, 479, 487, 498
NgoMIV GCCGGC 1 cut(s) 44
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 4 cut(s) 229, 319, 425, 489
NruI TCGCGA 2 cut(s) 329, 340
NsbI TGCGCA 1 cut(s) 411
PcsI WCGNNNNNNNCGW 3 cut(s) 56, 123, 349
PdiI GCCGGC 1 cut(s) 46
PdmI GAANNNNTTC 2 cut(s) 422, 511
PfeI GAWTC 2 cut(s) 4, 275
PinAI ACCGGT 2 cut(s) 368, 420
PkrI GCNGC 4 cut(s) 124, 139, 409, 460
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 200
PspN4I GGNNCC 4 cut(s) 229, 319, 425, 489
PspPI GGNCC 4 cut(s) 235, 363, 371, 395
PsuI RGATCY 3 cut(s) 317, 487, 498
PvuII CAGCTG 1 cut(s) 407
RruI TCGCGA 2 cut(s) 329, 340
SaqAI TTAA 3 cut(s) 114, 200, 401
SatI GCNGC 4 cut(s) 123, 138, 408, 459
Sau3AI GATC 4 cut(s) 317, 479, 487, 498
Sau96I GGNCC 4 cut(s) 235, 363, 371, 395
SchI GAGTC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 65
SetI ASST 4 cut(s) 24, 216, 400, 409
SfaNI GCATC 1 cut(s) 452
SinI GGWCC 4 cut(s) 235, 363, 371, 395
Sse9I AATT 3 cut(s) 81, 323, 511
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 3 cut(s) 359, 438, 505
TasI AATT 3 cut(s) 81, 323, 511
TauI GCSGC 3 cut(s) 125, 140, 461
TfiI GAWTC 2 cut(s) 4, 275
Tru1I TTAA 3 cut(s) 114, 200, 401
Tru9I TTAA 3 cut(s) 114, 200, 401
TseI GCWGC 1 cut(s) 407
TspGWI ACGGA 2 cut(s) 284, 341
VpaK11BI GGWCC 4 cut(s) 235, 363, 371, 395
VspI ATTAAT 1 cut(s) 200
XapI RAATTY 2 cut(s) 81, 323
XmnI GAANNNNTTC 2 cut(s) 422, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.