Rmu_sc0002751.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002751.1
OG0000214
Physical Location & Seq
Forward (+)
1438 .. 1815
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002751.1_g000001.1.cds

Sequence Viewer

Length: 378 bp
atggcccgccgacgtcaattggcctcgaacaaccagactcgggatgctcaagaggctttgaatagtgtctctcgagaaatggacatctcctgcgatattttaaatgaacgatccatccgcctgcgggaactacaaatccaaaggtccgacttcaaacttcaaatcgaggacctccaagcccatttagcctttgttgagaatgcgattgttgcagaagaagctcaactcgatgagcctttggctgcttctgaagaaatgggccgcaacctggcccgtatcagagatcgggccactcaggccgaagctggtgccattaaggcgaaacgccacgtggaggaactttgtttgaaattgagctttgcaggccaatatttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.22

Weight (kDa)

5.47

Isoelectric Point (pI)

60.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 308
AciI CCGC 4 cut(s) 7, 118, 124, 262
AclWI GGATC 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 270
AcvI CACGTG 1 cut(s) 331
AcyI GRCGYC 1 cut(s) 13
AfiI CCNNNNNNNGG 4 cut(s) 40, 124, 268, 334
AgsI TTSAA 4 cut(s) 61, 154, 161, 349
AjnI CCWGG 1 cut(s) 267
AloI GAACNNNNNNTCC 4 cut(s) 99, 120, 131, 152
AluBI AGCT 3 cut(s) 221, 305, 357
AluI AGCT 3 cut(s) 221, 305, 357
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 105
Ama87I CYCGRG 2 cut(s) 39, 72
AoxI GGCC 7 cut(s) 3, 21, 259, 270, 288, 297, 364
ApeKI GCWGC 1 cut(s) 242
AspS9I GGNCC 6 cut(s) 4, 144, 169, 259, 271, 288
AvaI CYCGRG 2 cut(s) 39, 72
AvaII GGWCC 2 cut(s) 144, 169
BanI GGYRCC 1 cut(s) 308
BbrPI CACGTG 1 cut(s) 331
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 73
BglI GCCNNNNNGGC 2 cut(s) 296, 317
BisI GCNGC 2 cut(s) 243, 262
BlsI GCNGC 2 cut(s) 244, 263
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 2 cut(s) 144, 169
BmeT110I CYCGRG 2 cut(s) 39, 72
BmgT120I GGNCC 6 cut(s) 4, 144, 169, 259, 271, 288
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 13
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 124, 268, 334
BseBI CCWGG 1 cut(s) 269
BseGI GGATG 2 cut(s) 49, 114
BseLI CCNNNNNNNGG 4 cut(s) 40, 124, 268, 334
BseMII CTCAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 229
BshFI GGCC 7 cut(s) 5, 23, 261, 272, 290, 299, 366
BshNI GGYRCC 1 cut(s) 308
BsiHKCI CYCGRG 2 cut(s) 39, 72
BslI CCNNNNNNNGG 4 cut(s) 40, 124, 268, 334
BsmAI GTCTC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 7 cut(s) 5, 23, 261, 272, 290, 299, 366
BsoBI CYCGRG 2 cut(s) 39, 72
Bsp143I GATC 2 cut(s) 110, 283
BspACI CCGC 4 cut(s) 7, 118, 124, 262
BspANI GGCC 7 cut(s) 5, 23, 261, 272, 290, 299, 366
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 310
BspPI GGATC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 308
BssMI GATC 2 cut(s) 110, 283
BssNI GRCGYC 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 269
BstACI GRCGYC 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 331
BstC8I GCNNGC 3 cut(s) 7, 122, 364
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 49, 114
BstKTI GATC 2 cut(s) 113, 286
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 110, 283
BstMWI GCNNNNNNNGC 7 cut(s) 53, 185, 209, 218, 296, 317, 363
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 229
BsuRI GGCC 7 cut(s) 5, 23, 261, 272, 290, 299, 366
BtsCI GGATG 2 cut(s) 49, 114
Cac8I GCNNGC 3 cut(s) 7, 122, 364
Cfr13I GGNCC 6 cut(s) 4, 144, 169, 259, 271, 288
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 112, 285
DpnII GATC 2 cut(s) 110, 283
DraI TTTAAA 1 cut(s) 102
EciI GGCGGA 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 144, 169
Eco57I CTGAAG 1 cut(s) 270
Eco72I CACGTG 1 cut(s) 331
Eco88I CYCGRG 2 cut(s) 39, 72
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 267
FauI CCCGC 2 cut(s) 14, 117
Fnu4HI GCNGC 2 cut(s) 243, 262
FokI GGATG 2 cut(s) 56, 101
Fsp4HI GCNGC 2 cut(s) 243, 262
GluI GCNGC 2 cut(s) 243, 262
HaeIII GGCC 7 cut(s) 5, 23, 261, 272, 290, 299, 366
Hin1I GRCGYC 1 cut(s) 13
HinfI GANTC 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 148, 250, 281
Hpy188III TCNNGA 4 cut(s) 41, 50, 72, 74
Hpy99I CGWCG 1 cut(s) 15
HpyCH4IV ACGT 2 cut(s) 13, 330
HpyCH4V TGCA 2 cut(s) 212, 362
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 185, 209, 218, 296, 317, 363
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 2 cut(s) 13, 330
Hsp92I GRCGYC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 110, 283
LpnPI CCDG 8 cut(s) 47, 103, 134, 254, 281, 281, 291, 348
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 34
MaeII ACGT 2 cut(s) 13, 330
MalI GATC 2 cut(s) 112, 285
MboI GATC 2 cut(s) 110, 283
MboII GAAGA 2 cut(s) 227, 263
MfeI CAATTG 1 cut(s) 17
MluCI AATT 2 cut(s) 17, 350
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 5 cut(s) 34, 46, 160, 182, 328
MseI TTAA 2 cut(s) 101, 315
MspR9I CCNGG 1 cut(s) 269
MunI CAATTG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 7 cut(s) 53, 185, 209, 218, 296, 317, 363
NdeII GATC 2 cut(s) 110, 283
NlaIV GGNNCC 1 cut(s) 310
PaeR7I CTCGAG 1 cut(s) 72
PctI GAATGC 1 cut(s) 205
PkrI GCNGC 2 cut(s) 244, 263
PleI GAGTC 1 cut(s) 31
PmaCI CACGTG 1 cut(s) 331
PmlI CACGTG 1 cut(s) 331
PpsI GAGTC 1 cut(s) 31
Ppu21I YACGTR 1 cut(s) 331
PpuMI RGGWCCY 1 cut(s) 169
Psp5II RGGWCCY 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 267
PspCI CACGTG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 310
PspPI GGNCC 6 cut(s) 4, 144, 169, 259, 271, 288
PspPPI RGGWCCY 1 cut(s) 169
SaqAI TTAA 2 cut(s) 101, 315
SatI GCNGC 2 cut(s) 243, 262
Sau3AI GATC 2 cut(s) 110, 283
Sau96I GGNCC 6 cut(s) 4, 144, 169, 259, 271, 288
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 269
SetI ASST 8 cut(s) 16, 146, 174, 223, 270, 307, 333, 359
SfaNI GCATC 1 cut(s) 34
SfiI GGCCNNNNNGGCC 1 cut(s) 296
Sfr274I CTCGAG 1 cut(s) 72
SinI GGWCC 2 cut(s) 144, 169
SlaI CTCGAG 1 cut(s) 72
SmlI CTYRAG 2 cut(s) 48, 72
SmoI CTYRAG 2 cut(s) 48, 72
Sse9I AATT 2 cut(s) 17, 350
SsiI CCGC 4 cut(s) 7, 118, 124, 262
SspI AATATT 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 267
TaiI ACGT 2 cut(s) 16, 333
TaqI TCGA 4 cut(s) 26, 73, 165, 228
TasI AATT 2 cut(s) 17, 350
TauI GCSGC 1 cut(s) 264
Tru1I TTAA 2 cut(s) 101, 315
Tru9I TTAA 2 cut(s) 101, 315
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 144, 169
XhoI CTCGAG 1 cut(s) 72
ZraI GACGTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.