Rmu_sc0006984.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006984.1
OG0000214
Physical Location & Seq
Forward (+)
37444 .. 38079
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006984.1_g000007.1.cds

Sequence Viewer

Length: 636 bp
atgcgccccttcgataccgacattagtggccctttctggatccttgccttttggttgcagatttatttccctcgcttccgtcgcgatgatattccaaaggaacctccagtcgattcccttttggggaactgtctttgccgcaacgtaaggtatcgagctcctccctactcccagtgttttatttacttgtacttgctaggagagacgtcgaacccaaaaatagtcctttctaggcgtttccctcctccccttgacgatggctttctgtccagtggacaggatcatagcgaaagagccctcctggcctctcgttgcgccatctcctgcttagatatttgtcttgccaccgaccgcgtaagttatgagctctatgcccctaaccacttcactcgccaatttgggttggcccagttggtaccttggcctctggttgattatgccaattactacacctcttggcagagattagccccacctgggtctgtcccatttcagagtcagtttactttgatagtgattcccccttgggtcagaacgctgtaccccctcaatgatgtcgatgatgattatgctgattggtggaaagaagtgtccatgaactgttgggacctgccacagacgaactcttcgtcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

211

Amino Acids

24.52

Weight (kDa)

5.12

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 618
Acc65I GGTACC 1 cut(s) 415
AccB1I GGYRCC 1 cut(s) 415
AccII CGCG 2 cut(s) 84, 354
AciI CCGC 2 cut(s) 139, 352
AclWI GGATC 3 cut(s) 34, 47, 288
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 3 cut(s) 191, 417, 542
AfiI CCNNNNNNNGG 2 cut(s) 123, 477
AjnI CCWGG 2 cut(s) 300, 475
AloI GAACNNNNNNTCC 1 cut(s) 614
AluBI AGCT 2 cut(s) 158, 367
AluI AGCT 2 cut(s) 158, 367
Alw21I GWGCWC 2 cut(s) 160, 369
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 3 cut(s) 34, 47, 288
AoxI GGCC 4 cut(s) 28, 303, 405, 422
ArsI GACNNNNNNTTYG 2 cut(s) 610, 614
Asp718I GGTACC 1 cut(s) 415
AspLEI GCGC 2 cut(s) 6, 317
AspS9I GGNCC 3 cut(s) 29, 406, 607
AvaII GGWCC 1 cut(s) 607
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 3 cut(s) 160, 298, 369
Bbv12I GWGCWC 2 cut(s) 160, 369
BccI CCATC 2 cut(s) 251, 326
BciT130I CCWGG 2 cut(s) 302, 477
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 197, 231
BfuAI ACCTGC 1 cut(s) 618
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
Bme1390I CCNGG 2 cut(s) 302, 477
Bme18I GGWCC 1 cut(s) 607
BmgT120I GGNCC 3 cut(s) 29, 406, 607
BmiI GGNNCC 4 cut(s) 41, 102, 417, 608
BmrFI CCNGG 2 cut(s) 302, 477
BmrI ACTGGG 2 cut(s) 166, 403
BmuI ACTGGG 2 cut(s) 166, 403
BpmI CTGGAG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 419, 476, 524
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 477
Bse1I ACTGG 4 cut(s) 107, 172, 270, 409
BseBI CCWGG 2 cut(s) 302, 477
BseDI CCNNGG 3 cut(s) 419, 476, 524
BseLI CCNNNNNNNGG 2 cut(s) 123, 477
BseNI ACTGG 4 cut(s) 107, 172, 270, 409
BseRI GAGGAG 2 cut(s) 150, 234
Bsh1236I CGCG 2 cut(s) 84, 354
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 4 cut(s) 30, 305, 407, 424
BshNI GGYRCC 1 cut(s) 415
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 2 cut(s) 160, 369
BslFI GGGAC 2 cut(s) 470, 620
BslI CCNNNNNNNGG 2 cut(s) 123, 477
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 2 cut(s) 470, 620
BsnI GGCC 4 cut(s) 30, 305, 407, 424
Bsp1286I GDGCHC 3 cut(s) 160, 298, 369
Bsp143I GATC 2 cut(s) 39, 280
Bsp68I TCGCGA 1 cut(s) 84
BspACI CCGC 2 cut(s) 139, 352
BspANI GGCC 4 cut(s) 30, 305, 407, 424
BspFNI CGCG 2 cut(s) 84, 354
BspLI GGNNCC 4 cut(s) 41, 102, 417, 608
BspMI ACCTGC 1 cut(s) 618
BspPI GGATC 3 cut(s) 34, 47, 288
BspT107I GGYRCC 1 cut(s) 415
BsrI ACTGG 4 cut(s) 107, 172, 270, 409
BssECI CCNNGG 3 cut(s) 419, 476, 524
BssMI GATC 2 cut(s) 39, 280
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 2 cut(s) 419, 524
Bst2UI CCWGG 2 cut(s) 302, 477
Bst4CI ACNGT 2 cut(s) 131, 602
Bst6I CTCTTC 1 cut(s) 631
BstACI GRCGYC 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 328
BstFNI CGCG 2 cut(s) 84, 354
BstHHI GCGC 2 cut(s) 6, 317
BstKTI GATC 2 cut(s) 42, 283
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 39, 280
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 2 cut(s) 81, 302
BstNI CCWGG 2 cut(s) 302, 477
BstSCI CCNGG 2 cut(s) 300, 475
BstUI CGCG 2 cut(s) 84, 354
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 4 cut(s) 30, 305, 407, 424
BtgZI GCGATG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 179, 277
BtuMI TCGCGA 1 cut(s) 84
BveI ACCTGC 1 cut(s) 618
CfoI GCGC 2 cut(s) 6, 317
Cfr13I GGNCC 3 cut(s) 29, 406, 607
Csp6I GTAC 3 cut(s) 190, 416, 541
CviAII CATG 1 cut(s) 595
CviJI RGCY 9 cut(s) 30, 158, 261, 296, 305, 367, 407, 424, 470
CviKI_1 RGCY 9 cut(s) 30, 158, 261, 296, 305, 367, 407, 424, 470
CviQI GTAC 3 cut(s) 190, 416, 541
DdeI CTNAG 1 cut(s) 328
DpnI GATC 2 cut(s) 41, 282
DpnII GATC 2 cut(s) 39, 280
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
Ecl136II GAGCTC 2 cut(s) 158, 367
Eco130I CCWWGG 2 cut(s) 419, 524
Eco24I GRGCYC 3 cut(s) 160, 298, 369
Eco47I GGWCC 1 cut(s) 607
Eco53kI GAGCTC 2 cut(s) 158, 367
EcoICRI GAGCTC 2 cut(s) 158, 367
EcoO109I RGGNCCY 1 cut(s) 607
EcoRII CCWGG 2 cut(s) 300, 475
EcoT14I CCWWGG 2 cut(s) 419, 524
EcoT38I GRGCYC 3 cut(s) 160, 298, 369
ErhI CCWWGG 2 cut(s) 419, 524
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 1 cut(s) 598
FaiI YATR 6 cut(s) 285, 363, 372, 438, 570, 596
FaqI GGGAC 2 cut(s) 470, 620
FatI CATG 1 cut(s) 594
Fnu4HI GCNGC 1 cut(s) 139
FriOI GRGCYC 3 cut(s) 160, 298, 369
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 2 cut(s) 197, 231
GlaI GCGC 2 cut(s) 5, 316
GluI GCNGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 4 cut(s) 30, 305, 407, 424
HhaI GCGC 2 cut(s) 6, 317
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 1 cut(s) 598
Hin6I GCGC 2 cut(s) 4, 315
HinP1I GCGC 2 cut(s) 4, 315
HinfI GANTC 3 cut(s) 113, 496, 517
Hpy166II GTNNAC 2 cut(s) 275, 504
Hpy188I TCNGA 2 cut(s) 495, 533
Hpy188III TCNNGA 3 cut(s) 37, 83, 633
Hpy8I GTNNAC 2 cut(s) 275, 504
Hpy99I CGWCG 2 cut(s) 84, 211
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 131, 602
HpyCH4IV ACGT 2 cut(s) 144, 206
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 302
HpyF3I CTNAG 1 cut(s) 328
HpySE526I ACGT 2 cut(s) 144, 206
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 598
HspAI GCGC 2 cut(s) 4, 315
KpnI GGTACC 1 cut(s) 419
Kzo9I GATC 2 cut(s) 39, 280
LmnI GCTCC 1 cut(s) 163
MaeI CTAG 2 cut(s) 197, 231
MaeII ACGT 2 cut(s) 144, 206
MalI GATC 2 cut(s) 41, 282
MboI GATC 2 cut(s) 39, 280
MboII GAAGA 1 cut(s) 618
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 3 cut(s) 160, 298, 369
MluCI AATT 2 cut(s) 395, 442
MlyI GAGTC 1 cut(s) 505
MspR9I CCNGG 2 cut(s) 302, 477
MvaI CCWGG 2 cut(s) 302, 477
MvnI CGCG 2 cut(s) 84, 354
MwoI GCNNNNNNNGC 2 cut(s) 81, 302
NdeII GATC 2 cut(s) 39, 280
NlaIII CATG 1 cut(s) 598
NlaIV GGNNCC 4 cut(s) 41, 102, 417, 608
NruI TCGCGA 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 626
PfeI GAWTC 2 cut(s) 113, 517
PkrI GCNGC 1 cut(s) 140
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
PpuMI RGGWCCY 1 cut(s) 607
Psp124BI GAGCTC 2 cut(s) 160, 369
Psp5II RGGWCCY 1 cut(s) 607
Psp6I CCWGG 2 cut(s) 300, 475
PspGI CCWGG 2 cut(s) 300, 475
PspN4I GGNNCC 4 cut(s) 41, 102, 417, 608
PspPI GGNCC 3 cut(s) 29, 406, 607
PspPPI RGGWCCY 1 cut(s) 607
PsuI RGATCY 1 cut(s) 39
RruI TCGCGA 1 cut(s) 84
RsaI GTAC 3 cut(s) 191, 417, 542
RsaNI GTAC 3 cut(s) 190, 416, 541
SacI GAGCTC 2 cut(s) 160, 369
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 2 cut(s) 39, 280
Sau96I GGNCC 3 cut(s) 29, 406, 607
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 2 cut(s) 302, 477
SduI GDGCHC 3 cut(s) 160, 298, 369
SinI GGWCC 1 cut(s) 607
Sse9I AATT 2 cut(s) 395, 442
SsiI CCGC 2 cut(s) 139, 352
SspMI CTAG 2 cut(s) 197, 231
SstI GAGCTC 2 cut(s) 160, 369
StyD4I CCNGG 2 cut(s) 300, 475
StyI CCWWGG 2 cut(s) 419, 524
TaaI ACNGT 2 cut(s) 131, 602
TaiI ACGT 2 cut(s) 147, 209
TaqI TCGA 5 cut(s) 12, 111, 154, 209, 558
TasI AATT 2 cut(s) 395, 442
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 2 cut(s) 113, 517
TscAI CASTG 2 cut(s) 179, 277
TspDTI ATGAA 1 cut(s) 611
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 2 cut(s) 179, 277
VpaK11BI GGWCC 1 cut(s) 607
XspI CTAG 2 cut(s) 197, 231
ZraI GACGTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.