Rmu_sc0004549.1_g000012

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004549.1
OG0000214
Physical Location & Seq
Forward (+)
49894 .. 50442
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004549.1_g000012.1.cds

Sequence Viewer

Length: 549 bp
atgggctttggtggaggtgataatcaagcgagcctgggtcccacaccttgcgatcgtttgccagatgatgctatggcctcttttgggcttctcatcagccgtcctatatcggctcttcggcaggtgcccagtgattttaacagttgggggccaaggaagaaagtgggtttctggcctaccatcgttcccaaggaaaatgtttggtatcaggaggtccgagcgagagatttggccctttgggatgcggtgggtatcacccaaaccatcgatctatgcttctgtcttccccataataccagccctgcatcgctagctgccgctctttgcttctggaatacctccagtaatacatttgatttcctatttaggcagatgagcataactctgctggatgttcttaccatcacgaggttgcccattgactttgacccctatgtgcatggtcagtttaatggcattcaatttcctttaagaatggatatggctggtcgggggacatcgcagcaaatcctaccagttctggcgcgactattaccgcacctaacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

182

Amino Acids

20.22

Weight (kDa)

6.25

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 320
AccII CGCG 1 cut(s) 526
AciI CCGC 3 cut(s) 245, 318, 536
AfiI CCNNNNNNNGG 2 cut(s) 84, 408
AgsI TTSAA 1 cut(s) 461
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
AoxI GGCC 4 cut(s) 75, 149, 173, 231
ApeKI GCWGC 2 cut(s) 314, 502
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 4 cut(s) 38, 149, 214, 232
AsuHPI GGTGA 2 cut(s) 29, 247
AsuNHI GCTAGC 1 cut(s) 310
AvaII GGWCC 2 cut(s) 38, 214
BaeGI GKGCMC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 124
BauI CACGAG 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 301, 514
BccI CCATC 3 cut(s) 188, 272, 410
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 35
BfaI CTAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 3 cut(s) 315, 318, 503
BlsI GCNGC 3 cut(s) 316, 319, 504
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 2 cut(s) 38, 214
BmgT120I GGNCC 4 cut(s) 38, 149, 214, 232
BmiI GGNNCC 4 cut(s) 39, 40, 126, 150
BmrFI CCNGG 1 cut(s) 35
BmrI ACTGGG 1 cut(s) 123
BmsI GCATC 3 cut(s) 58, 232, 314
BmtI GCTAGC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BpmI CTGGAG 1 cut(s) 325
Bsa29I ATCGAT 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 34, 152, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 408
Bse1I ACTGG 3 cut(s) 129, 342, 515
BseBI CCWGG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 34, 152, 189
BseGI GGATG 2 cut(s) 247, 397
BseLI CCNNNNNNNGG 2 cut(s) 84, 408
BseNI ACTGG 3 cut(s) 129, 342, 515
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 2 cut(s) 301, 514
Bsh1236I CGCG 1 cut(s) 526
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 4 cut(s) 77, 151, 175, 233
BshNI GGYRCC 1 cut(s) 124
BshVI ATCGAT 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 55
BslFI GGGAC 2 cut(s) 24, 508
BslI CCNNNNNNNGG 2 cut(s) 84, 408
BsmFI GGGAC 2 cut(s) 24, 508
BsmI GAATGC 1 cut(s) 456
BsnI GGCC 4 cut(s) 77, 151, 175, 233
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 52, 268
BspACI CCGC 3 cut(s) 245, 318, 536
BspANI GGCC 4 cut(s) 77, 151, 175, 233
BspDI ATCGAT 1 cut(s) 267
BspFNI CGCG 1 cut(s) 526
BspLI GGNNCC 4 cut(s) 39, 40, 126, 150
BspMI ACCTGC 1 cut(s) 112
BspOI GCTAGC 1 cut(s) 314
BspQI GCTCTTC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 124
BsrBI CCGCTC 1 cut(s) 320
BsrI ACTGG 3 cut(s) 129, 342, 515
BssECI CCNNGG 3 cut(s) 34, 152, 189
BssMI GATC 2 cut(s) 52, 268
BssSI CACGAG 1 cut(s) 406
BssT1I CCWWGG 2 cut(s) 152, 189
Bst2BI CACGAG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 31, 312
BstF5I GGATG 2 cut(s) 247, 397
BstFNI CGCG 1 cut(s) 526
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 2 cut(s) 55, 271
BstMBI GATC 2 cut(s) 52, 268
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 129
BstUI CGCG 1 cut(s) 526
BstV1I GCAGC 2 cut(s) 301, 514
BstV2I GAAGAC 1 cut(s) 275
Bsu15I ATCGAT 1 cut(s) 267
BsuRI GGCC 4 cut(s) 77, 151, 175, 233
BsuTUI ATCGAT 1 cut(s) 267
BtgZI GCGATG 2 cut(s) 291, 483
BtsCI GGATG 2 cut(s) 247, 397
BtsIMutI CAGTG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 31, 312
CfoI GCGC 1 cut(s) 526
Cfr13I GGNCC 4 cut(s) 38, 149, 214, 232
ClaI ATCGAT 1 cut(s) 267
CviAII CATG 2 cut(s) 440, 546
DpnI GATC 2 cut(s) 54, 270
DpnII GATC 2 cut(s) 52, 268
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 152, 189
Eco47I GGWCC 2 cut(s) 38, 214
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 152, 189
ErhI CCWWGG 2 cut(s) 152, 189
FaeI CATG 2 cut(s) 443, 549
FaiI YATR 9 cut(s) 74, 107, 274, 291, 380, 435, 441, 482, 547
FaqI GGGAC 2 cut(s) 24, 508
FatI CATG 2 cut(s) 439, 545
Fnu4HI GCNGC 3 cut(s) 315, 318, 503
FokI GGATG 2 cut(s) 254, 404
Fsp4HI GCNGC 3 cut(s) 315, 318, 503
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 525
GluI GCNGC 3 cut(s) 315, 318, 503
GsuI CTGGAG 1 cut(s) 325
HaeIII GGCC 4 cut(s) 77, 151, 175, 233
HhaI GCGC 1 cut(s) 526
Hin1II CATG 2 cut(s) 443, 549
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HphI GGTGA 2 cut(s) 29, 247
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 3 cut(s) 209, 331, 406
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 2 cut(s) 305, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
Hsp92II CATG 2 cut(s) 443, 549
HspAI GCGC 1 cut(s) 524
KflI GGGWCCC 1 cut(s) 38
Kzo9I GATC 2 cut(s) 52, 268
LguI GCTCTTC 1 cut(s) 120
Lsp1109I GCAGC 2 cut(s) 301, 514
LweI GCATC 3 cut(s) 58, 232, 314
MaeI CTAG 1 cut(s) 311
MalI GATC 2 cut(s) 54, 270
MbiI CCGCTC 1 cut(s) 320
MboI GATC 2 cut(s) 52, 268
MboII GAAGA 3 cut(s) 107, 169, 275
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 1 cut(s) 461
MnlI CCTC 5 cut(s) 8, 88, 205, 349, 402
MseI TTAA 3 cut(s) 138, 450, 470
MspR9I CCNGG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 456
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 526
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 2 cut(s) 52, 268
NheI GCTAGC 1 cut(s) 310
NlaIII CATG 2 cut(s) 443, 549
NlaIV GGNNCC 4 cut(s) 39, 40, 126, 150
PaqCI CACCTGC 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 456
PkrI GCNGC 3 cut(s) 316, 319, 504
Ple19I CGATCG 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 4 cut(s) 39, 40, 126, 150
PspPI GGNCC 4 cut(s) 38, 149, 214, 232
PspPPI RGGWCCY 1 cut(s) 38
PvuI CGATCG 1 cut(s) 55
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 138, 450, 470
SatI GCNGC 3 cut(s) 315, 318, 503
Sau3AI GATC 2 cut(s) 52, 268
Sau96I GGNCC 4 cut(s) 38, 149, 214, 232
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 129
SetI ASST 8 cut(s) 19, 49, 126, 216, 316, 341, 413, 543
SfaNI GCATC 3 cut(s) 58, 232, 314
SinI GGWCC 2 cut(s) 38, 214
Sse9I AATT 1 cut(s) 461
SsiI CCGC 3 cut(s) 245, 318, 536
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 2 cut(s) 152, 189
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 267
TasI AATT 1 cut(s) 461
TauI GCSGC 1 cut(s) 320
Tru1I TTAA 3 cut(s) 138, 450, 470
Tru9I TTAA 3 cut(s) 138, 450, 470
TscAI CASTG 1 cut(s) 136
TseI GCWGC 2 cut(s) 314, 502
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 2 cut(s) 38, 214
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.