Rmu_sc0001461.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001461.1
OG0000214
Physical Location & Seq
Reverse (-)
26828 .. 27676
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001461.1_g000008.1.cds

Sequence Viewer

Length: 519 bp
atgccgctggacctcttacaggtccagttttccagttttgcttctgtagaaaattgggctgattgtttgaaggtcttctactcaaaaatagctctggcactcttcataagaaatgatccttgggatgtcgacactactcttagggcccaccgacatcaatcggccgcgaacacccaggctcgcgacgctcaagaggctttgaatagtgtctctcgagaaatggacatctcccgcgatattttaaatgaacgatccatccgcctgcgggaactacaaatccaaaggtcagacttcaaacttcagatcgaggatctccaagcacatttagcctttgttgagaatgcgattattgcagaagaagctcaactcgatgagcctttggctgcttctgaagaaatgggtcgcaatctggcccgtatcagagatcgggccactcaggctgaagctggtgctattgaggcgaaacgccacgtggaggaactttgtttgaaattgagctttgcaggccaatctttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.52

Weight (kDa)

5.04

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AccII CGCG 3 cut(s) 167, 183, 234
AciI CCGC 5 cut(s) 5, 165, 232, 259, 265
AclWI GGATC 3 cut(s) 110, 246, 318
AcoI YGGCCR 1 cut(s) 162
AcuI CTGAAG 3 cut(s) 284, 411, 462
AcvI CACGTG 1 cut(s) 472
AfiI CCNNNNNNNGG 3 cut(s) 19, 265, 475
AgsI TTSAA 4 cut(s) 70, 202, 295, 490
AjnI CCWGG 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AloI GAACNNNNNNTCC 4 cut(s) 240, 261, 272, 293
AluBI AGCT 4 cut(s) 92, 362, 446, 498
AluI AGCT 4 cut(s) 92, 362, 446, 498
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 3 cut(s) 110, 246, 318
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 5 cut(s) 144, 162, 411, 429, 505
ApaI GGGCCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 6 cut(s) 10, 22, 144, 145, 412, 429
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 2 cut(s) 10, 22
BaeGI GKGCMC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 148
BarI GAAGNNNNNNTAC 2 cut(s) 62, 94
BbrPI CACGTG 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 370
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 214
BfmI CTRYAG 1 cut(s) 45
BglI GCCNNNNNGGC 1 cut(s) 437
BisI GCNGC 3 cut(s) 5, 165, 384
BlsI GCNGC 3 cut(s) 6, 166, 385
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 2 cut(s) 10, 22
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 6 cut(s) 10, 22, 144, 145, 412, 429
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 472
BsaJI CCNNGG 2 cut(s) 119, 174
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 265, 475
Bse1I ACTGG 2 cut(s) 25, 33
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 119, 174
BseGI GGATG 2 cut(s) 130, 255
BseLI CCNNNNNNNGG 3 cut(s) 19, 265, 475
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 2 cut(s) 25, 33
BseSI GKGCMC 1 cut(s) 148
BseX3I CGGCCG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 370
Bsh1236I CGCG 3 cut(s) 167, 183, 234
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 5 cut(s) 146, 164, 413, 431, 507
BsiEI CGRYCG 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 213
BslI CCNNNNNNNGG 3 cut(s) 19, 265, 475
BsmAI GTCTC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 5 cut(s) 146, 164, 413, 431, 507
BsoBI CYCGRG 1 cut(s) 213
Bsp120I GGGCCC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 5 cut(s) 115, 251, 303, 310, 424
Bsp68I TCGCGA 1 cut(s) 183
BspACI CCGC 5 cut(s) 5, 165, 232, 259, 265
BspANI GGCC 5 cut(s) 146, 164, 413, 431, 507
BspCNI CTCAG 1 cut(s) 448
BspFNI CGCG 3 cut(s) 167, 183, 234
BspLI GGNNCC 1 cut(s) 146
BspPI GGATC 3 cut(s) 110, 246, 318
BsrI ACTGG 2 cut(s) 25, 33
BssECI CCNNGG 2 cut(s) 119, 174
BssMI GATC 5 cut(s) 115, 251, 303, 310, 424
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 472
BstC8I GCNNGC 3 cut(s) 181, 263, 505
BstDEI CTNAG 2 cut(s) 140, 435
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 130, 255
BstFNI CGCG 3 cut(s) 167, 183, 234
BstKTI GATC 5 cut(s) 118, 254, 306, 313, 427
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 5 cut(s) 115, 251, 303, 310, 424
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 8 cut(s) 185, 194, 326, 350, 359, 437, 458, 504
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 3 cut(s) 167, 183, 234
BstV1I GCAGC 1 cut(s) 370
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BstZI CGGCCG 1 cut(s) 162
BsuRI GGCC 5 cut(s) 146, 164, 413, 431, 507
BtsCI GGATG 2 cut(s) 130, 255
BtuMI TCGCGA 1 cut(s) 183
Cac8I GCNNGC 3 cut(s) 181, 263, 505
Cfr13I GGNCC 6 cut(s) 10, 22, 144, 145, 412, 429
CseI GACGC 1 cut(s) 194
DdeI CTNAG 2 cut(s) 140, 435
DpnI GATC 5 cut(s) 117, 253, 305, 312, 426
DpnII GATC 5 cut(s) 115, 251, 303, 310, 424
DraI TTTAAA 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 162
EagI CGGCCG 1 cut(s) 162
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
EciI GGCGGA 1 cut(s) 248
EclXI CGGCCG 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 10, 22
Eco52I CGGCCG 1 cut(s) 162
Eco57I CTGAAG 3 cut(s) 284, 411, 462
Eco72I CACGTG 1 cut(s) 472
Eco88I CYCGRG 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 119
FaiI YATR 1 cut(s) 107
FauI CCCGC 2 cut(s) 239, 258
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 5, 165, 384
FokI GGATG 2 cut(s) 137, 242
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 3 cut(s) 5, 165, 384
GluI GCNGC 3 cut(s) 5, 165, 384
HaeIII GGCC 5 cut(s) 146, 164, 413, 431, 507
HgaI GACGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 4 cut(s) 289, 303, 391, 422
Hpy188III TCNNGA 4 cut(s) 182, 191, 213, 215
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 2 cut(s) 353, 503
HpyF10VI GCNNNNNNNGC 8 cut(s) 185, 194, 326, 350, 359, 437, 458, 504
HpyF3I CTNAG 2 cut(s) 140, 435
HpySE526I ACGT 1 cut(s) 471
Kzo9I GATC 5 cut(s) 115, 251, 303, 310, 424
Lsp1109I GCAGC 1 cut(s) 370
MaeII ACGT 1 cut(s) 471
MalI GATC 5 cut(s) 117, 253, 305, 312, 426
MboI GATC 5 cut(s) 115, 251, 303, 310, 424
MboII GAAGA 4 cut(s) 67, 94, 368, 404
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 52, 491
MnlI CCTC 5 cut(s) 23, 187, 301, 451, 469
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 176
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 3 cut(s) 167, 183, 234
MwoI GCNNNNNNNGC 8 cut(s) 185, 194, 326, 350, 359, 437, 458, 504
NdeII GATC 5 cut(s) 115, 251, 303, 310, 424
NlaIV GGNNCC 1 cut(s) 146
NruI TCGCGA 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 213
PctI GAATGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 74
PkrI GCNGC 3 cut(s) 6, 166, 385
PmaCI CACGTG 1 cut(s) 472
PmlI CACGTG 1 cut(s) 472
Ppu21I YACGTR 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 174
PspCI CACGTG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 146
PspOMI GGGCCC 1 cut(s) 144
PspPI GGNCC 6 cut(s) 10, 22, 144, 145, 412, 429
PsuI RGATCY 1 cut(s) 310
RruI TCGCGA 1 cut(s) 183
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 3 cut(s) 5, 165, 384
Sau3AI GATC 5 cut(s) 115, 251, 303, 310, 424
Sau96I GGNCC 6 cut(s) 10, 22, 144, 145, 412, 429
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 148
SetI ASST 9 cut(s) 15, 24, 75, 94, 287, 364, 448, 474, 500
SfcI CTRYAG 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 213
SinI GGWCC 2 cut(s) 10, 22
SlaI CTCGAG 1 cut(s) 213
SmlI CTYRAG 2 cut(s) 189, 213
SmoI CTYRAG 2 cut(s) 189, 213
Sse9I AATT 2 cut(s) 52, 491
SsiI CCGC 5 cut(s) 5, 165, 232, 259, 265
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 119
TaiI ACGT 1 cut(s) 474
TaqI TCGA 4 cut(s) 129, 214, 306, 369
TasI AATT 2 cut(s) 52, 491
TauI GCSGC 2 cut(s) 7, 167
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 2 cut(s) 94, 261
VpaK11BI GGWCC 2 cut(s) 10, 22
XagI CCTNNNNNAGG 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 213
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.