Rmu_sc0006153.1_g000059

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006153.1
OG0000214
Physical Location & Seq
Forward (+)
223220 .. 232267
9048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006153.1_g000059.1.cds

Sequence Viewer

Length: 2253 bp
ctgccgacgtcagagaccggagaacctatcgggtccgaaaacacccaactgcgccttctaccgccgccaccaccgagaatcggcgctagaggacaccacagggacgaccagacggaggagacgatcctatctggaaagtttcgtcgctgcagttcgctggaaaagccggatcgggtcgggctgcagaaggaagaggccgggaagggaggtaaggtcggtctgggatgggctgttgttgctaggatgggtaaggatgtgtcacactgtggtatagggctagagaaggtaattagggttctcgtgggtcagctcccgaggacactaggaccgaatcacgttgacagagggtttggtggcactgacagttggctcctgagaattctgggactggagtgtggtcaccgaaggagaagtcgactgatgggctttggtggaggtgataatcaagcgagtctaggtcccacaccttgctatcgtttgccagatgatgttacggcctattatgagcttcccatctgccatcccatagtggctctttggcaggtgcctaaacacctccagcaatacattcgatttccagtttgggcagatgaactctgctggatgttcttaccatcaaggggttgcccattgactttgacccctatgtgcatgatttatttccctcacttccgtcatggtgatattccaaaggatcctccagttgattcccttttggggaattggctttgtcgcaacgtaaggtatcgagctccaccctactccgagtgttttattttcttgtacttgctggaagagatgtcggacccaaaaatagtcctttataggcgattcccttctccccttgaggatggctttctgcccaatggacgggatcatagcgaaagatccatcctggcctttcgtcgcgccatctcctgcttggatattcgtcttgccaccgaccacataagctacaagctctatgcccccaaccactttgctcgccaatttgggttggcccagttggacctaccatatgacgaactattcgccatgatctttcgtggcatgagtagccctggttcggaggaccgcgagattcttgagcgcttctccaaccctgcagcacaaccctcccgatctattctaccttctcgctcattgcatccaaggatacaaatcagcgaggttggggcaacaaaacaaaaggcaacagcaaaggagactcctgagggagagtcttctcacaatgaggatcccgctgaggccactgctatcctcgctcgcaaacgagaccgtgctcaattcgtcgaagagagttttgaagatgataagcctctgggaatgatcactggtccctctcgcttaagtgaggatggatcctcggtcgccgcggggaaaatcgcctcttctcaaattcaggcgctttcgccctcggcagtaccggagatccccacgacaaatgaagttagtccccttgtttctttgggtccccctgctttgtccaacgaacctataatccaagaggattcatttcgcattgaggaggtggcttcaaacgttgagggtcctatcggtaggacagtcaccccagagatggaaaatgatgcggacggtggtggtgccccccaagtctcgcgaacaaatgagacagccgtcaaagctgagggctctgtgattgaatatgctccacttgcccatggtgagccgcgagttgagttcccagattctcccgtggctgaagggacagaccaacctgttaaagatgaagaaactgaggaagttgtccaccctttagcattggtggttcttaattatgcggcacctcctcctcctcccaccagattcgagagattgatgagggtgttggaggtaactcctcattctgctgtggatgaggctaagatggtgcttcgcgaacatgtcggagaaggcattgccctgcggcaattcagtgccattgacactctgctgaatgagtttggtaggacctgccaatgtcaatctgctacgaacgcccaagctcgtgacgctcgagaggctttgaatagcctcactcgagaattggacatctcccgcgcctctgttgagaatgcgattgctgcaaaagaagcccaactcgatgaacctttggctgcttctgaagaaatgggtcgcaacctggcccgtgtcagagaacaggccactcaggccgaagctggtgccattgcggcgaacctctgcgtggaggaactttacttgaaattgagattcgcgggccaacctttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

750

Amino Acids

82.57

Weight (kDa)

5.38

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
AatII GACGTC 1 cut(s) 11
Acc36I ACCTGC 2 cut(s) 532, 1982
AccB1I GGYRCC 4 cut(s) 544, 1604, 1804, 2183
AccI GTMKAC 1 cut(s) 415
AccII CGCG 8 cut(s) 909, 1077, 1376, 1621, 1693, 1899, 2061, 2237
AclI AACGTT 1 cut(s) 1542
AcsI RAATTY 2 cut(s) 378, 1398
AcuI CTGAAG 2 cut(s) 1743, 2145
AcyI GRCGYC 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 266
AfaI GTAC 2 cut(s) 785, 1425
AfeI AGCGCT 1 cut(s) 1091
AfiI CCNNNNNNNGG 8 cut(s) 80, 115, 620, 717, 870, 1066, 1579, 2206
AflII CTTAAG 1 cut(s) 1348
AflIII ACRYGT 1 cut(s) 1903
AgsI TTSAA 5 cut(s) 1307, 1539, 1664, 2029, 2224
AjnI CCWGG 3 cut(s) 894, 1060, 2142
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AloI GAACNNNNNNTCC 2 cut(s) 1485, 1517
AluBI AGCT 8 cut(s) 310, 508, 752, 954, 961, 1646, 2006, 2180
AluI AGCT 8 cut(s) 310, 508, 752, 954, 961, 1646, 2006, 2180
Alw21I GWGCWC 2 cut(s) 754, 1285
Alw26I GTCTC 6 cut(s) 8, 113, 1199, 1269, 1621, 1625
Ama87I CYCGRG 3 cut(s) 313, 2016, 2040
Aor51HI AGCGCT 1 cut(s) 1091
AoxI GGCC 9 cut(s) 195, 495, 897, 999, 1248, 2145, 2163, 2172, 2239
ApeKI GCWGC 5 cut(s) 147, 181, 1106, 2084, 2117
ApoI RAATTY 2 cut(s) 378, 1398
ArsI GACNNNNNNTTYG 6 cut(s) 332, 364, 397, 429, 1013, 1045
AspLEI GCGC 6 cut(s) 54, 86, 911, 1092, 1408, 2063
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 5 cut(s) 392, 449, 692, 1561, 1697
AvaI CYCGRG 3 cut(s) 313, 2016, 2040
AxyI CCTNAGG 1 cut(s) 1212
BaeGI GKGCMC 1 cut(s) 1609
BamHI GGATCC 3 cut(s) 694, 1237, 1361
BanI GGYRCC 4 cut(s) 544, 1604, 1804, 2183
BanII GRGCYC 2 cut(s) 754, 1655
BauI CACGAG 2 cut(s) 299, 2007
BbsI GAAGAC 1 cut(s) 1215
Bbv12I GWGCWC 2 cut(s) 754, 1285
BbvCI CCTCAGC 2 cut(s) 1245, 1647
BbvI GCAGC 5 cut(s) 134, 168, 1118, 2071, 2104
BceAI ACGGC 2 cut(s) 510, 1622
BcgI CGANNNNNNTGC 4 cut(s) 551, 585, 2165, 2199
BciT130I CCWGG 3 cut(s) 896, 1062, 2144
BciVI GTATCC 1 cut(s) 1149
BclI TGATCA 1 cut(s) 1329
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 6 cut(s) 8, 113, 1199, 1269, 1621, 1625
BfaI CTAG 5 cut(s) 87, 240, 278, 323, 455
BfmI CTRYAG 3 cut(s) 148, 182, 1104
BfoI RGCGCY 3 cut(s) 87, 1093, 1409
BfrI CTTAAG 1 cut(s) 1348
BfuAI ACCTGC 2 cut(s) 532, 1982
BfuI GTATCC 1 cut(s) 1149
BglI GCCNNNNNGGC 2 cut(s) 2171, 2192
Bme1390I CCNGG 4 cut(s) 199, 896, 1062, 2144
BmeT110I CYCGRG 3 cut(s) 313, 2016, 2040
BmrFI CCNGG 4 cut(s) 199, 896, 1062, 2144
BmrI ACTGGG 1 cut(s) 997
BmsI GCATC 2 cut(s) 1156, 1579
BmuI ACTGGG 1 cut(s) 997
BoxI GACNNNNGTC 1 cut(s) 1637
BpiI GAAGAC 1 cut(s) 1215
BplI GAGNNNNNCTC 2 cut(s) 1079, 1111
BpmI CTGGAG 3 cut(s) 410, 542, 684
Bpu10I CCTNAGC 2 cut(s) 1245, 1647
BpuEI CTTGAG 2 cut(s) 866, 1106
BpuMI CCSGG 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 1160
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 2 cut(s) 8, 1269
BsaJI CCNNGG 8 cut(s) 314, 1060, 1151, 1365, 1374, 1416, 1681, 1716
BsaWI WCCGGW 2 cut(s) 17, 1426
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 8 cut(s) 80, 115, 620, 717, 870, 1066, 1579, 2206
Bse1I ACTGG 5 cut(s) 393, 578, 701, 1003, 1339
Bse21I CCTNAGG 1 cut(s) 1212
Bse3DI GCAATG 3 cut(s) 1142, 1917, 2187
Bse8I GATNNNNATC 1 cut(s) 1160
BseBI CCWGG 3 cut(s) 896, 1062, 2144
BseDI CCNNGG 8 cut(s) 314, 1060, 1151, 1365, 1374, 1416, 1681, 1716
BseJI GATNNNNATC 1 cut(s) 1160
BseLI CCNNNNNNNGG 8 cut(s) 80, 115, 620, 717, 870, 1066, 1579, 2206
BseMI GCAATG 3 cut(s) 1142, 1917, 2187
BseMII CTCAG 6 cut(s) 365, 1203, 1236, 1638, 1749, 2183
BseNI ACTGG 5 cut(s) 393, 578, 701, 1003, 1339
BseRI GAGGAG 6 cut(s) 131, 1541, 1800, 1803, 1806, 1851
BseSI GKGCMC 1 cut(s) 1609
BseXI GCAGC 5 cut(s) 134, 168, 1118, 2071, 2104
Bsh1236I CGCG 8 cut(s) 909, 1077, 1376, 1621, 1693, 1899, 2061, 2237
Bsh1285I CGRYCG 1 cut(s) 1371
BshFI GGCC 9 cut(s) 197, 497, 899, 1001, 1250, 2147, 2165, 2174, 2241
BshNI GGYRCC 4 cut(s) 544, 1604, 1804, 2183
BsiEI CGRYCG 1 cut(s) 1371
BsiHKAI GWGCWC 2 cut(s) 754, 1285
BsiHKCI CYCGRG 3 cut(s) 313, 2016, 2040
BsiSI CCGG 4 cut(s) 18, 167, 198, 1427
BslFI GGGAC 7 cut(s) 116, 399, 444, 1323, 1440, 1458, 1741
BslI CCNNNNNNNGG 8 cut(s) 80, 115, 620, 717, 870, 1066, 1579, 2206
BsmAI GTCTC 6 cut(s) 8, 113, 1199, 1269, 1621, 1625
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 7 cut(s) 116, 399, 444, 1323, 1440, 1458, 1741
BsmI GAATGC 1 cut(s) 2080
BsnI GGCC 9 cut(s) 197, 497, 899, 1001, 1250, 2147, 2165, 2174, 2241
Bso31I GGTCTC 2 cut(s) 8, 1269
BsoBI CYCGRG 3 cut(s) 313, 2016, 2040
Bsp1286I GDGCHC 4 cut(s) 754, 1285, 1609, 1655
Bsp19I CCATGG 1 cut(s) 1681
Bsp68I TCGCGA 2 cut(s) 1621, 1899
BspANI GGCC 9 cut(s) 197, 497, 899, 1001, 1250, 2147, 2165, 2174, 2241
BspCNI CTCAG 6 cut(s) 366, 1204, 1237, 1639, 1750, 2182
BspFNI CGCG 8 cut(s) 909, 1077, 1376, 1621, 1693, 1899, 2061, 2237
BspMAI CTGCAG 3 cut(s) 152, 186, 1108
BspMI ACCTGC 2 cut(s) 532, 1982
BspT107I GGYRCC 4 cut(s) 544, 1604, 1804, 2183
BspTI CTTAAG 1 cut(s) 1348
BspTNI GGTCTC 2 cut(s) 8, 1269
BsrDI GCAATG 3 cut(s) 1142, 1917, 2187
BsrI ACTGG 5 cut(s) 393, 578, 701, 1003, 1339
BssECI CCNNGG 8 cut(s) 314, 1060, 1151, 1365, 1374, 1416, 1681, 1716
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 2 cut(s) 299, 2007
BssT1I CCWWGG 2 cut(s) 1151, 1681
Bst2BI CACGAG 2 cut(s) 299, 2007
Bst2UI CCWGG 3 cut(s) 896, 1062, 2144
Bst4CI ACNGT 5 cut(s) 266, 365, 1280, 1567, 1598
Bst6I CTCTTC 4 cut(s) 186, 789, 1290, 1396
BstACI GRCGYC 1 cut(s) 8
BstAFI CTTAAG 1 cut(s) 1348
BstC8I GCNNGC 3 cut(s) 985, 1267, 2239
BstDEI CTNAG 7 cut(s) 374, 1212, 1245, 1647, 1758, 1884, 2169
BstDSI CCRYGG 3 cut(s) 1374, 1681, 1716
BstEII GGTNACC 1 cut(s) 398
BstFNI CGCG 8 cut(s) 909, 1077, 1376, 1621, 1693, 1899, 2061, 2237
BstH2I RGCGCY 3 cut(s) 87, 1093, 1409
BstHHI GCGC 6 cut(s) 54, 86, 911, 1092, 1408, 2063
BstMAI GTCTC 6 cut(s) 8, 113, 1199, 1269, 1621, 1625
BstMCI CGRYCG 1 cut(s) 1371
BstNI CCWGG 3 cut(s) 896, 1062, 2144
BstNSI RCATGY 1 cut(s) 1907
BstPAI GACNNNNGTC 1 cut(s) 1637
BstPI GGTNACC 1 cut(s) 398
BstSCI CCNGG 4 cut(s) 197, 894, 1060, 2142
BstSFI CTRYAG 3 cut(s) 148, 182, 1104
BstSLI GKGCMC 1 cut(s) 1609
BstUI CGCG 8 cut(s) 909, 1077, 1376, 1621, 1693, 1899, 2061, 2237
BstV1I GCAGC 5 cut(s) 134, 168, 1118, 2071, 2104
BstV2I GAAGAC 1 cut(s) 1215
BstX2I RGATCY 5 cut(s) 694, 887, 1237, 1361, 1431
BstYI RGATCY 5 cut(s) 694, 887, 1237, 1361, 1431
Bsu36I CCTNAGG 1 cut(s) 1212
BsuI GTATCC 1 cut(s) 1149
BsuRI GGCC 9 cut(s) 197, 497, 899, 1001, 1250, 2147, 2165, 2174, 2241
BtgI CCRYGG 3 cut(s) 1374, 1681, 1716
BtsI GCAGTG 1 cut(s) 1251
BtsIMutI CAGTG 5 cut(s) 262, 357, 1251, 1332, 1942
BtuMI TCGCGA 2 cut(s) 1621, 1899
BveI ACCTGC 2 cut(s) 532, 1982
Cac8I GCNNGC 3 cut(s) 985, 1267, 2239
CfoI GCGC 6 cut(s) 54, 86, 911, 1092, 1408, 2063
Cfr42I CCGCGG 1 cut(s) 1377
CseI GACGC 1 cut(s) 2021
Csp6I GTAC 2 cut(s) 784, 1424
CviAII CATG 6 cut(s) 652, 677, 1036, 1051, 1682, 1904
CviQI GTAC 2 cut(s) 784, 1424
DdeI CTNAG 7 cut(s) 374, 1212, 1245, 1647, 1758, 1884, 2169
DraIII CACNNNGTG 1 cut(s) 266
Eam1104I CTCTTC 4 cut(s) 186, 789, 1290, 1396
EarI CTCTTC 4 cut(s) 186, 789, 1290, 1396
Ecl136II GAGCTC 1 cut(s) 752
Eco130I CCWWGG 2 cut(s) 1151, 1681
Eco24I GRGCYC 2 cut(s) 754, 1655
Eco31I GGTCTC 2 cut(s) 8, 1269
Eco47III AGCGCT 1 cut(s) 1091
Eco53kI GAGCTC 1 cut(s) 752
Eco57I CTGAAG 2 cut(s) 1743, 2145
Eco81I CCTNAGG 1 cut(s) 1212
Eco88I CYCGRG 3 cut(s) 313, 2016, 2040
Eco91I GGTNACC 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 752
EcoO109I RGGNCCY 4 cut(s) 458, 1472, 1550, 1971
EcoO65I GGTNACC 1 cut(s) 398
EcoRI GAATTC 1 cut(s) 378
EcoRII CCWGG 3 cut(s) 894, 1060, 2142
EcoT14I CCWWGG 2 cut(s) 1151, 1681
EcoT38I GRGCYC 2 cut(s) 754, 1655
ErhI CCWWGG 2 cut(s) 1151, 1681
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 6 cut(s) 655, 680, 1039, 1054, 1685, 1907
FaqI GGGAC 7 cut(s) 116, 399, 444, 1323, 1440, 1458, 1741
FatI CATG 6 cut(s) 651, 676, 1035, 1050, 1681, 1903
FauI CCCGC 4 cut(s) 1249, 1369, 2066, 2230
FauNDI CATATG 1 cut(s) 1018
FbaI TGATCA 1 cut(s) 1329
FblI GTMKAC 1 cut(s) 415
FriOI GRGCYC 2 cut(s) 754, 1655
FspBI CTAG 5 cut(s) 87, 240, 278, 323, 455
GlaI GCGC 6 cut(s) 53, 85, 910, 1091, 1407, 2062
GsuI CTGGAG 3 cut(s) 410, 542, 684
HaeII RGCGCY 3 cut(s) 87, 1093, 1409
HaeIII GGCC 9 cut(s) 197, 497, 899, 1001, 1250, 2147, 2165, 2174, 2241
HapII CCGG 4 cut(s) 18, 167, 198, 1427
HgaI GACGC 1 cut(s) 2021
HhaI GCGC 6 cut(s) 54, 86, 911, 1092, 1408, 2063
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 6 cut(s) 655, 680, 1039, 1054, 1685, 1907
Hin6I GCGC 6 cut(s) 52, 84, 909, 1090, 1406, 2061
HinP1I GCGC 6 cut(s) 52, 84, 909, 1090, 1406, 2061
HincII GTYRAC 2 cut(s) 340, 416
HindII GTYRAC 2 cut(s) 340, 416
HpaII CCGG 4 cut(s) 18, 167, 198, 1427
HphI GGTGA 5 cut(s) 392, 449, 692, 1561, 1697
Hpy166II GTNNAC 3 cut(s) 340, 416, 1771
Hpy188I TCNGA 8 cut(s) 13, 37, 766, 805, 1069, 1910, 2125, 2156
Hpy8I GTNNAC 3 cut(s) 340, 416, 1771
Hpy99I CGWCG 4 cut(s) 10, 147, 909, 1295
HpyAV CCTTC 9 cut(s) 65, 181, 196, 277, 399, 846, 1143, 1718, 1907
HpyCH4III ACNGT 5 cut(s) 266, 365, 1280, 1567, 1598
HpyCH4IV ACGT 4 cut(s) 8, 336, 738, 1542
HpyCH4V TGCA 6 cut(s) 150, 184, 651, 1106, 1147, 2087
HpyF3I CTNAG 7 cut(s) 374, 1212, 1245, 1647, 1758, 1884, 2169
HpySE526I ACGT 4 cut(s) 8, 336, 738, 1542
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 6 cut(s) 655, 680, 1039, 1054, 1685, 1907
HspAI GCGC 6 cut(s) 52, 84, 909, 1090, 1406, 2061
KflI GGGWCCC 1 cut(s) 1472
Ksp22I TGATCA 1 cut(s) 1329
KspI CCGCGG 1 cut(s) 1377
LmnI GCTCC 4 cut(s) 315, 375, 757, 1675
Lsp1109I GCAGC 5 cut(s) 134, 168, 1118, 2071, 2104
LweI GCATC 2 cut(s) 1156, 1579
MaeI CTAG 5 cut(s) 87, 240, 278, 323, 455
MaeII ACGT 4 cut(s) 8, 336, 738, 1542
MaeIII GTNAC 6 cut(s) 258, 398, 490, 1567, 1855, 2009
MboII GAAGA 8 cut(s) 203, 806, 1215, 1307, 1319, 1383, 1763, 2138
MflI RGATCY 5 cut(s) 694, 887, 1237, 1361, 1431
MhlI GDGCHC 4 cut(s) 754, 1285, 1609, 1655
MlyI GAGTC 3 cut(s) 460, 1201, 1229
MmeI TCCRAC 6 cut(s) 783, 987, 1122, 1512, 1830, 1888
MseI TTAA 3 cut(s) 1349, 1743, 1794
MspA1I CMGCKG 2 cut(s) 1244, 1376
MspCI CTTAAG 1 cut(s) 1348
MspI CCGG 4 cut(s) 18, 167, 198, 1427
MspR9I CCNGG 4 cut(s) 199, 896, 1062, 2144
Mva1269I GAATGC 1 cut(s) 2080
MvaI CCWGG 3 cut(s) 896, 1062, 2144
MvnI CGCG 8 cut(s) 909, 1077, 1376, 1621, 1693, 1899, 2061, 2237
NciI CCSGG 1 cut(s) 199
NcoI CCATGG 1 cut(s) 1681
NdeI CATATG 1 cut(s) 1018
NlaIII CATG 6 cut(s) 655, 680, 1039, 1054, 1685, 1907
NmeAIII GCCGAG 1 cut(s) 1397
NmuCI GTSAC 4 cut(s) 258, 398, 1567, 2009
NruI TCGCGA 2 cut(s) 1621, 1899
NspI RCATGY 1 cut(s) 1907
PaeR7I CTCGAG 2 cut(s) 2016, 2040
PaqCI CACCTGC 1 cut(s) 532
PciI ACATGT 1 cut(s) 1903
PcsI WCGNNNNNNNCGW 2 cut(s) 119, 2014
PctI GAATGC 1 cut(s) 2080
PfeI GAWTC 9 cut(s) 78, 331, 707, 831, 1081, 1511, 1709, 1827, 2232
PleI GAGTC 3 cut(s) 459, 1201, 1228
PpsI GAGTC 3 cut(s) 459, 1201, 1228
PpuMI RGGWCCY 4 cut(s) 458, 1472, 1550, 1971
PscI ACATGT 1 cut(s) 1903
PshAI GACNNNNGTC 1 cut(s) 1637
Psp124BI GAGCTC 1 cut(s) 754
Psp1406I AACGTT 1 cut(s) 1542
Psp5II RGGWCCY 4 cut(s) 458, 1472, 1550, 1971
Psp6I CCWGG 3 cut(s) 894, 1060, 2142
PspEI GGTNACC 1 cut(s) 398
PspGI CCWGG 3 cut(s) 894, 1060, 2142
PspPPI RGGWCCY 4 cut(s) 458, 1472, 1550, 1971
PsrI GAACNNNNNNTAC 4 cut(s) 279, 311, 1048, 1080
PstI CTGCAG 3 cut(s) 152, 186, 1108
PsuI RGATCY 5 cut(s) 694, 887, 1237, 1361, 1431
RruI TCGCGA 2 cut(s) 1621, 1899
RsaI GTAC 2 cut(s) 785, 1425
RsaNI GTAC 2 cut(s) 784, 1424
SacI GAGCTC 1 cut(s) 754
SacII CCGCGG 1 cut(s) 1377
SalI GTCGAC 1 cut(s) 414
SaqAI TTAA 3 cut(s) 1349, 1743, 1794
SchI GAGTC 3 cut(s) 460, 1201, 1229
ScrFI CCNGG 4 cut(s) 199, 896, 1062, 2144
SduI GDGCHC 4 cut(s) 754, 1285, 1609, 1655
SfaNI GCATC 2 cut(s) 1156, 1579
SfcI CTRYAG 3 cut(s) 148, 182, 1104
SfiI GGCCNNNNNGGCC 1 cut(s) 2171
Sfr274I CTCGAG 2 cut(s) 2016, 2040
Sfr303I CCGCGG 1 cut(s) 1377
SgrBI CCGCGG 1 cut(s) 1377
SlaI CTCGAG 2 cut(s) 2016, 2040
SmlI CTYRAG 5 cut(s) 845, 1085, 1348, 2016, 2040
SmoI CTYRAG 5 cut(s) 845, 1085, 1348, 2016, 2040
SspMI CTAG 5 cut(s) 87, 240, 278, 323, 455
SstI GAGCTC 1 cut(s) 754
StyD4I CCNGG 4 cut(s) 197, 894, 1060, 2142
StyI CCWWGG 2 cut(s) 1151, 1681
TaaI ACNGT 5 cut(s) 266, 365, 1280, 1567, 1598
TaiI ACGT 4 cut(s) 11, 339, 741, 1545
TaqI TCGA 8 cut(s) 415, 571, 748, 1293, 1830, 2017, 2041, 2103
TaqII GACCGA 3 cut(s) 206, 343, 1357
TatI WGTACW 1 cut(s) 783
TauI GCSGC 6 cut(s) 67, 1376, 1693, 1805, 1930, 2195
TfiI GAWTC 9 cut(s) 78, 331, 707, 831, 1081, 1511, 1709, 1827, 2232
Tru1I TTAA 3 cut(s) 1349, 1743, 1794
Tru9I TTAA 3 cut(s) 1349, 1743, 1794
TscAI CASTG 5 cut(s) 269, 364, 1258, 1339, 1942
TseFI GTSAC 4 cut(s) 258, 398, 1567, 2009
TseI GCWGC 5 cut(s) 147, 181, 1106, 2084, 2117
Tsp45I GTSAC 4 cut(s) 258, 398, 1567, 2009
TspDTI ATGAA 5 cut(s) 606, 1461, 1503, 1764, 2121
TspGWI ACGGA 2 cut(s) 128, 662
TspRI CASTG 5 cut(s) 269, 364, 1258, 1339, 1942
Vha464I CTTAAG 1 cut(s) 1348
XapI RAATTY 2 cut(s) 378, 1398
XceI RCATGY 1 cut(s) 1907
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XhoI CTCGAG 2 cut(s) 2016, 2040
XmiI GTMKAC 1 cut(s) 415
XspI CTAG 5 cut(s) 87, 240, 278, 323, 455
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.