Rmu_sc0010817.1_g000021

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010817.1
OG0000214
Physical Location & Seq
Forward (+)
70141 .. 70941
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010817.1_g000021.1.cds

Sequence Viewer

Length: 801 bp
atgaccgtggcagtgtccagtagcaagaccgcatctctcttggctagattctcttggaggcttttcttctatcttgcttttccggagaaacccagaagcaaactgttacaagttctctctttcctccaaacttcatcttccatttccgaaagaaaaaaaaacccagaaatggcacccaagaaaccattcgttattgatcaggcagatgaaatcactaagaaagccgcattcacctggcggactaacatgggtgttcgatgtagaagtcagaccagagaggagagaagtcgactgatgggctttggtggaggtgataatcaagcgagcctgggtcccacacctcgcgatcgtttgccagatgatgctatggcctattatgggcttcccattcgtcgtcccataactgctcttcggcaggtgcccagtgattttagcagttggggactaaggaggaaaatgggtttccggcctaccatcgctcccgaggaaaatgtttggtatcaggaggtccgagcgagagatttggcctattgggatgcggtgggtatcacccaaaccatcgatatatgcttttgtcttcgccataataccagccctgcaccgctagccaccgctctttgcttctggaacacctccagcaatacattcgattttcaatttgggcagatgagcataactctgctggatgttcttaccattaccgggttgcccattgactttgacccctatgtgcatggtcagtttgatggcattcaattttctttgagaatgaatatgggtggtcaggggcatcgcagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

266

Amino Acids

30.17

Weight (kDa)

9.62

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 406
Acc36I ACCTGC 1 cut(s) 406
AccB1I GGYRCC 2 cut(s) 172, 418
AccBSI CCGCTC 1 cut(s) 614
AccI GTMKAC 1 cut(s) 289
AccII CGCG 1 cut(s) 345
AccIII TCCGGA 1 cut(s) 82
AciI CCGC 6 cut(s) 30, 225, 238, 539, 602, 612
AfiI CCNNNNNNNGG 3 cut(s) 169, 378, 702
AgsI TTSAA 2 cut(s) 656, 755
AjnI CCWGG 2 cut(s) 233, 327
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 1 cut(s) 798
AluI AGCT 1 cut(s) 798
Ama87I CYCGRG 1 cut(s) 482
Aor13HI TCCGGA 1 cut(s) 82
AoxI GGCC 3 cut(s) 369, 467, 525
ApeKI GCWGC 1 cut(s) 795
Asp700I GAANNNNTTC 1 cut(s) 185
AspS9I GGNCC 2 cut(s) 332, 508
AsuC2I CCSGG 1 cut(s) 703
AsuHPI GGTGA 3 cut(s) 223, 323, 541
AsuNHI GCTAGC 1 cut(s) 604
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 2 cut(s) 332, 508
BaeGI GKGCMC 1 cut(s) 423
BanI GGYRCC 2 cut(s) 172, 418
BbsI GAAGAC 1 cut(s) 569
BccI CCATC 4 cut(s) 289, 482, 566, 740
BcgI CGANNNNNNTGC 2 cut(s) 628, 662
BciT130I CCWGG 2 cut(s) 235, 329
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 1 cut(s) 703
BfaI CTAG 2 cut(s) 45, 605
BfuAI ACCTGC 1 cut(s) 406
BisI GCNGC 2 cut(s) 225, 796
BlsI GCNGC 2 cut(s) 226, 797
Bme1390I CCNGG 3 cut(s) 235, 329, 703
Bme18I GGWCC 2 cut(s) 332, 508
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 2 cut(s) 332, 508
BmiI GGNNCC 4 cut(s) 174, 333, 334, 420
BmrFI CCNGG 3 cut(s) 235, 329, 703
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 3 cut(s) 41, 352, 526
BmtI GCTAGC 1 cut(s) 608
BmuI ACTGGG 1 cut(s) 417
BpiI GAAGAC 1 cut(s) 569
BplI GAGNNNNNCTC 2 cut(s) 661, 693
BpmI CTGGAG 1 cut(s) 619
BpuMI CCSGG 1 cut(s) 703
Bsa29I ATCGAT 1 cut(s) 561
BsaJI CCNNGG 3 cut(s) 6, 328, 483
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 378, 702
Bse1I ACTGG 2 cut(s) 18, 423
BseAI TCCGGA 1 cut(s) 82
BseBI CCWGG 2 cut(s) 235, 329
BseCI ATCGAT 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 6, 328, 483
BseGI GGATG 2 cut(s) 541, 691
BseLI CCNNNNNNNGG 3 cut(s) 169, 378, 702
BseNI ACTGG 2 cut(s) 18, 423
BseRI GAGGAG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 423
BsgI GTGCAG 1 cut(s) 582
Bsh1236I CGCG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 3 cut(s) 371, 469, 527
BshNI GGYRCC 2 cut(s) 172, 418
BshVI ATCGAT 1 cut(s) 561
BsiEI CGRYCG 1 cut(s) 349
BsiHKCI CYCGRG 1 cut(s) 482
BsiSI CCGG 3 cut(s) 83, 466, 702
BslFI GGGAC 3 cut(s) 318, 381, 456
BslI CCNNNNNNNGG 3 cut(s) 169, 378, 702
BsmFI GGGAC 3 cut(s) 318, 381, 456
BsmI GAATGC 2 cut(s) 227, 750
BsnI GGCC 3 cut(s) 371, 469, 527
BsoBI CYCGRG 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 423
Bsp13I TCCGGA 1 cut(s) 82
Bsp143I GATC 2 cut(s) 196, 346
Bsp68I TCGCGA 1 cut(s) 345
BspACI CCGC 6 cut(s) 30, 225, 238, 539, 602, 612
BspANI GGCC 3 cut(s) 371, 469, 527
BspDI ATCGAT 1 cut(s) 561
BspEI TCCGGA 1 cut(s) 82
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 4 cut(s) 174, 333, 334, 420
BspMI ACCTGC 1 cut(s) 406
BspOI GCTAGC 1 cut(s) 608
BspQI GCTCTTC 1 cut(s) 414
BspT107I GGYRCC 2 cut(s) 172, 418
BsrBI CCGCTC 1 cut(s) 614
BsrI ACTGG 2 cut(s) 18, 423
BssECI CCNNGG 3 cut(s) 6, 328, 483
BssMI GATC 2 cut(s) 196, 346
Bst2UI CCWGG 2 cut(s) 235, 329
Bst4CI ACNGT 2 cut(s) 7, 105
Bst6I CTCTTC 1 cut(s) 414
BstC8I GCNNGC 2 cut(s) 325, 606
BstDEI CTNAG 2 cut(s) 216, 446
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 541, 691
BstFNI CGCG 1 cut(s) 345
BstKTI GATC 2 cut(s) 199, 349
BstMBI GATC 2 cut(s) 196, 346
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNI CCWGG 2 cut(s) 235, 329
BstSCI CCNGG 3 cut(s) 233, 327, 701
BstSLI GKGCMC 1 cut(s) 423
BstUI CGCG 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 569
Bsu15I ATCGAT 1 cut(s) 561
BsuRI GGCC 3 cut(s) 371, 469, 527
BsuTUI ATCGAT 1 cut(s) 561
BtgI CCRYGG 1 cut(s) 6
BtgZI GCGATG 2 cut(s) 460, 776
BtsCI GGATG 2 cut(s) 541, 691
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 430
BtuMI TCGCGA 1 cut(s) 345
BveI ACCTGC 1 cut(s) 406
Cac8I GCNNGC 2 cut(s) 325, 606
Cfr13I GGNCC 2 cut(s) 332, 508
ClaI ATCGAT 1 cut(s) 561
CviAII CATG 2 cut(s) 247, 734
DdeI CTNAG 2 cut(s) 216, 446
DpnI GATC 2 cut(s) 198, 348
DpnII GATC 2 cut(s) 196, 346
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
EciI GGCGGA 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 332, 508
Eco88I CYCGRG 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 233, 327
FaeI CATG 2 cut(s) 250, 737
FaqI GGGAC 3 cut(s) 318, 381, 456
FatI CATG 2 cut(s) 246, 733
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 225, 796
FokI GGATG 2 cut(s) 548, 698
Fsp4HI GCNGC 2 cut(s) 225, 796
FspBI CTAG 2 cut(s) 45, 605
GluI GCNGC 2 cut(s) 225, 796
GsuI CTGGAG 1 cut(s) 619
HaeIII GGCC 3 cut(s) 371, 469, 527
HapII CCGG 3 cut(s) 83, 466, 702
Hin1II CATG 2 cut(s) 250, 737
HincII GTYRAC 1 cut(s) 290
HindII GTYRAC 1 cut(s) 290
HinfI GANTC 1 cut(s) 48
HpaII CCGG 3 cut(s) 83, 466, 702
HphI GGTGA 3 cut(s) 223, 323, 541
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 3 cut(s) 148, 270, 512
Hpy188III TCNNGA 5 cut(s) 83, 344, 482, 503, 625
Hpy8I GTNNAC 1 cut(s) 290
Hpy99I CGWCG 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 7, 105
HpyCH4V TGCA 2 cut(s) 599, 733
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 2 cut(s) 216, 446
Hsp92II CATG 2 cut(s) 250, 737
KflI GGGWCCC 1 cut(s) 332
Kpn2I TCCGGA 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 196, 346
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 484
LweI GCATC 3 cut(s) 41, 352, 526
MaeI CTAG 2 cut(s) 45, 605
MaeIII GTNAC 1 cut(s) 105
MalI GATC 2 cut(s) 198, 348
MbiI CCGCTC 1 cut(s) 614
MboI GATC 2 cut(s) 196, 346
MboII GAAGA 4 cut(s) 58, 129, 401, 569
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 2 cut(s) 656, 755
MnlI CCTC 9 cut(s) 51, 134, 271, 302, 351, 444, 478, 499, 643
MroI TCCGGA 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 185
MspI CCGG 3 cut(s) 83, 466, 702
MspR9I CCNGG 3 cut(s) 235, 329, 703
Mva1269I GAATGC 2 cut(s) 227, 750
MvaI CCWGG 2 cut(s) 235, 329
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 605
NciI CCSGG 1 cut(s) 703
NdeII GATC 2 cut(s) 196, 346
NheI GCTAGC 1 cut(s) 604
NlaIII CATG 2 cut(s) 250, 737
NlaIV GGNNCC 4 cut(s) 174, 333, 334, 420
NruI TCGCGA 1 cut(s) 345
PaqCI CACCTGC 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 414
PctI GAATGC 2 cut(s) 227, 750
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 2 cut(s) 226, 797
Ple19I CGATCG 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 332
Psp5II RGGWCCY 1 cut(s) 332
Psp6I CCWGG 2 cut(s) 233, 327
PspGI CCWGG 2 cut(s) 233, 327
PspN4I GGNNCC 4 cut(s) 174, 333, 334, 420
PspPI GGNCC 2 cut(s) 332, 508
PspPPI RGGWCCY 1 cut(s) 332
PvuI CGATCG 1 cut(s) 349
RruI TCGCGA 1 cut(s) 345
SalI GTCGAC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 414
SatI GCNGC 2 cut(s) 225, 796
Sau3AI GATC 2 cut(s) 196, 346
Sau96I GGNCC 2 cut(s) 332, 508
ScrFI CCNGG 3 cut(s) 235, 329, 703
SduI GDGCHC 1 cut(s) 423
SetI ASST 7 cut(s) 236, 313, 343, 420, 510, 635, 800
SfaNI GCATC 3 cut(s) 41, 352, 526
SinI GGWCC 2 cut(s) 332, 508
Sse9I AATT 2 cut(s) 656, 755
SsiI CCGC 6 cut(s) 30, 225, 238, 539, 602, 612
SspMI CTAG 2 cut(s) 45, 605
StyD4I CCNGG 3 cut(s) 233, 327, 701
TaaI ACNGT 2 cut(s) 7, 105
TaqI TCGA 4 cut(s) 256, 289, 561, 648
TasI AATT 2 cut(s) 656, 755
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 48
TscAI CASTG 2 cut(s) 18, 430
TseI GCWGC 1 cut(s) 795
TspDTI ATGAA 3 cut(s) 123, 222, 785
TspRI CASTG 2 cut(s) 18, 430
VpaK11BI GGWCC 2 cut(s) 332, 508
XmiI GTMKAC 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 2 cut(s) 45, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.