Rroxscaffold_6G00414600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000214
Physical Location & Seq
Forward (+)
36920498 .. 36921139
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414600.1

Sequence Viewer

Length: 555 bp
ATGCGACGGGCCGTCGAAGCCGAGGGCTATGTGCTTGAATCGCTCCACTTGCCCATGGTGAGCCGCGAGTTGAGTTCCCGCATTCTCTCGTGGCTGAAGGGACATACCAACTTGTTGAAGATGAAGAAACCGAGGGAAGTTGTCCACCCCTTAGCATTGGTGGTTGGTGATCCCGCGATGCCTCCTCCTCCTCCTCCCACCGCATTCGAGAGATTGATGAAGCGTCCTCCCACGAGTCTTGGAAGCCTTAAGGTATCTTCACCAGATAAGGCATTGACCCCGTGGCAATTCGGTGCCATTGACGCTCCGCCGAATGAGTTTGATAGGGCCCGCCGACGTCAATCGGCCCCGAACGCCCATGTTCGCAACGCTCGAGAGGCTTTGAATAGCCTCACCCGAGAAATGGACATCTCCCGCGGTATTTTAAATGAGCGAGCCATCCGCCCGCGAGAACTACAAATCCAAAGGTCCGACTTTAAACTTCGGATCGAGGACCTCCAAGCCCATTTAACCTCTCGTCGAGGATGCGATTGCTGCAGAAGAAGCCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.88

Weight (kDa)

10.59

Isoelectric Point (pI)

65.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 340
AccB1I GGYRCC 1 cut(s) 293
AccII CGCG 4 cut(s) 66, 176, 417, 448
AclWI GGATC 2 cut(s) 164, 494
AcuI CTGAAG 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 337
AfiI CCNNNNNNNGG 1 cut(s) 403
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 3 cut(s) 38, 118, 385
AhdI GACNNNNNGTC 1 cut(s) 11
AloI GAACNNNNNNTCC 2 cut(s) 444, 476
AlwI GGATC 2 cut(s) 164, 494
Ama87I CYCGRG 2 cut(s) 372, 396
AoxI GGCC 3 cut(s) 9, 327, 345
ApaI GGGCCC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 534
AspS9I GGNCC 6 cut(s) 9, 327, 328, 346, 468, 493
AsuHPI GGTGA 4 cut(s) 70, 179, 252, 385
AvaI CYCGRG 2 cut(s) 372, 396
AvaII GGWCC 2 cut(s) 468, 493
BaeGI GKGCMC 1 cut(s) 331
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 331
BauI CACGAG 2 cut(s) 88, 232
BbvI GCAGC 1 cut(s) 521
BccI CCATC 1 cut(s) 446
BfmI CTRYAG 1 cut(s) 535
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 2 cut(s) 64, 535
BlsI GCNGC 2 cut(s) 65, 536
Bme18I GGWCC 2 cut(s) 468, 493
BmeRI GACNNNNNGTC 1 cut(s) 11
BmeT110I CYCGRG 2 cut(s) 372, 396
BmgT120I GGNCC 6 cut(s) 9, 327, 328, 346, 468, 493
BmiI GGNNCC 3 cut(s) 295, 329, 348
BmsI GCATC 2 cut(s) 168, 515
Bpu10I CCTNAGC 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 337
BsaJI CCNNGG 5 cut(s) 21, 54, 131, 281, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 403
BseDI CCNNGG 5 cut(s) 21, 54, 131, 281, 415
BseGI GGATG 2 cut(s) 438, 530
BseLI CCNNNNNNNGG 1 cut(s) 403
BseRI GAGGAG 4 cut(s) 174, 177, 180, 183
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 1 cut(s) 521
Bsh1236I CGCG 4 cut(s) 66, 176, 417, 448
BshFI GGCC 3 cut(s) 11, 329, 347
BshNI GGYRCC 1 cut(s) 293
BsiHKCI CYCGRG 2 cut(s) 372, 396
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 114
BsmI GAATGC 2 cut(s) 81, 203
BsnI GGCC 3 cut(s) 11, 329, 347
BsoBI CYCGRG 2 cut(s) 372, 396
Bsp120I GGGCCC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 169, 486
Bsp19I CCATGG 1 cut(s) 54
BspANI GGCC 3 cut(s) 11, 329, 347
BspFNI CGCG 4 cut(s) 66, 176, 417, 448
BspLI GGNNCC 3 cut(s) 295, 329, 348
BspMAI CTGCAG 1 cut(s) 539
BspPI GGATC 2 cut(s) 164, 494
BspT107I GGYRCC 1 cut(s) 293
BspTI CTTAAG 1 cut(s) 248
BssECI CCNNGG 5 cut(s) 21, 54, 131, 281, 415
BssMI GATC 2 cut(s) 169, 486
BssNI GRCGYC 1 cut(s) 337
BssSI CACGAG 2 cut(s) 88, 232
BssT1I CCWWGG 1 cut(s) 54
Bst2BI CACGAG 2 cut(s) 88, 232
BstACI GRCGYC 1 cut(s) 337
BstAFI CTTAAG 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 331, 435, 446
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 3 cut(s) 54, 281, 415
BstF5I GGATG 2 cut(s) 438, 530
BstFNI CGCG 4 cut(s) 66, 176, 417, 448
BstKTI GATC 2 cut(s) 172, 489
BstMBI GATC 2 cut(s) 169, 486
BstMWI GCNNNNNNNGC 8 cut(s) 17, 40, 49, 302, 353, 377, 534, 543
BstSFI CTRYAG 1 cut(s) 535
BstSLI GKGCMC 1 cut(s) 331
BstUI CGCG 4 cut(s) 66, 176, 417, 448
BstV1I GCAGC 1 cut(s) 521
BsuRI GGCC 3 cut(s) 11, 329, 347
BtgI CCRYGG 3 cut(s) 54, 281, 415
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 2 cut(s) 438, 530
Cac8I GCNNGC 3 cut(s) 331, 435, 446
Cfr13I GGNCC 6 cut(s) 9, 327, 328, 346, 468, 493
Cfr42I CCGCGG 1 cut(s) 418
CseI GACGC 2 cut(s) 212, 311
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 2 cut(s) 55, 359
DdeI CTNAG 1 cut(s) 151
DpnI GATC 2 cut(s) 171, 488
DpnII GATC 2 cut(s) 169, 486
DraI TTTAAA 2 cut(s) 426, 478
DriI GACNNNNNGTC 1 cut(s) 11
Eam1105I GACNNNNNGTC 1 cut(s) 11
EciI GGCGGA 2 cut(s) 297, 431
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 331
Eco47I GGWCC 2 cut(s) 468, 493
Eco57I CTGAAG 1 cut(s) 116
Eco88I CYCGRG 2 cut(s) 372, 396
EcoO109I RGGNCCY 2 cut(s) 327, 493
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 58, 362
FaiI YATR 4 cut(s) 30, 56, 105, 360
FalI AAGNNNNNCTT 1 cut(s) 535
FaqI GGGAC 1 cut(s) 114
FatI CATG 2 cut(s) 54, 358
FauI CCCGC 5 cut(s) 86, 181, 338, 422, 453
Fnu4HI GCNGC 2 cut(s) 64, 535
FokI GGATG 2 cut(s) 425, 537
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 2 cut(s) 64, 535
GluI GCNGC 2 cut(s) 64, 535
HaeIII GGCC 3 cut(s) 11, 329, 347
HgaI GACGC 2 cut(s) 212, 311
Hin1I GRCGYC 1 cut(s) 337
Hin1II CATG 2 cut(s) 58, 362
HinfI GANTC 2 cut(s) 38, 235
HphI GGTGA 4 cut(s) 70, 179, 252, 385
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 472, 486
Hpy188III TCNNGA 2 cut(s) 208, 374
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 4 cut(s) 9, 17, 339, 522
HpyAV CCTTC 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 1 cut(s) 537
HpyF10VI GCNNNNNNNGC 8 cut(s) 17, 40, 49, 302, 353, 377, 534, 543
HpyF3I CTNAG 1 cut(s) 151
HpySE526I ACGT 1 cut(s) 337
Hsp92I GRCGYC 1 cut(s) 337
Hsp92II CATG 2 cut(s) 58, 362
KspI CCGCGG 1 cut(s) 418
Kzo9I GATC 2 cut(s) 169, 486
LmnI GCTCC 2 cut(s) 48, 310
LpnPI CCDG 1 cut(s) 276
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 2 cut(s) 168, 515
MaeII ACGT 1 cut(s) 337
MalI GATC 2 cut(s) 171, 488
MboI GATC 2 cut(s) 169, 486
MboII GAAGA 4 cut(s) 130, 136, 249, 552
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 1 cut(s) 287
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 495
MseI TTAA 4 cut(s) 249, 425, 477, 509
MspA1I CMGCKG 1 cut(s) 417
MspCI CTTAAG 1 cut(s) 248
Mva1269I GAATGC 2 cut(s) 81, 203
MvnI CGCG 4 cut(s) 66, 176, 417, 448
MwoI GCNNNNNNNGC 8 cut(s) 17, 40, 49, 302, 353, 377, 534, 543
NcoI CCATGG 1 cut(s) 54
NdeII GATC 2 cut(s) 169, 486
NlaIII CATG 2 cut(s) 58, 362
NlaIV GGNNCC 3 cut(s) 295, 329, 348
NmeAIII GCCGAG 1 cut(s) 46
PaeR7I CTCGAG 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PctI GAATGC 2 cut(s) 81, 203
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 65, 536
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
PpuMI RGGWCCY 1 cut(s) 493
Psp5II RGGWCCY 1 cut(s) 493
PspN4I GGNNCC 3 cut(s) 295, 329, 348
PspOMI GGGCCC 1 cut(s) 327
PspPI GGNCC 6 cut(s) 9, 327, 328, 346, 468, 493
PspPPI RGGWCCY 1 cut(s) 493
PstI CTGCAG 1 cut(s) 539
SacII CCGCGG 1 cut(s) 418
SaqAI TTAA 4 cut(s) 249, 425, 477, 509
SatI GCNGC 2 cut(s) 64, 535
Sau3AI GATC 2 cut(s) 169, 486
Sau96I GGNCC 6 cut(s) 9, 327, 328, 346, 468, 493
SchI GAGTC 1 cut(s) 244
SduI GDGCHC 1 cut(s) 331
SetI ASST 5 cut(s) 255, 340, 470, 498, 515
SfaNI GCATC 2 cut(s) 168, 515
SfcI CTRYAG 1 cut(s) 535
Sfr274I CTCGAG 1 cut(s) 372
Sfr303I CCGCGG 1 cut(s) 418
SgrBI CCGCGG 1 cut(s) 418
SinI GGWCC 2 cut(s) 468, 493
SlaI CTCGAG 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 248, 372
SmoI CTYRAG 2 cut(s) 248, 372
Sse9I AATT 1 cut(s) 287
StyI CCWWGG 1 cut(s) 54
TaiI ACGT 1 cut(s) 340
TaqI TCGA 5 cut(s) 15, 207, 373, 489, 520
TasI AATT 1 cut(s) 287
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 4 cut(s) 249, 425, 477, 509
Tru9I TTAA 4 cut(s) 249, 425, 477, 509
TseI GCWGC 1 cut(s) 534
TspDTI ATGAA 2 cut(s) 137, 233
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 468, 493
XhoI CTCGAG 1 cut(s) 372
ZraI GACGTC 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.