Rroxscaffold_6G00414590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000214
Physical Location & Seq
Forward (+)
36919333 .. 36920154
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414590.1

Sequence Viewer

Length: 411 bp
ATGATTCCCCCTTGGGCCGTAGCATTGTACCCCCTCAACGATGTCGACGATGATTATGTTGATGGGTGGAAAGAAGTGTCGTTGAACCGTCGGGACCCGCCATATGACGAACTCTTCGCCACGATCTTTAGTGGTATGAGTAGTCCCGGTCCGGAGGACTGCGAGATTCTTGAGCGCTTCTCCAACCCCCGCAACACAACCCTCGCGACCTATTCTACCTTCTCGCTTATCGTGTCCAGGGATACAAATCCACGAGCACGGGGGCAACAATCCGTCGCAGGACCACCGGTCCCTCTTGCCGCAGCGAGGCTGGATCCTCGGTCGCCACGAGGGAAATGGCCTCTTCTCAAATTCAAGCGCCTCCTCCCCCTCCGCACTAGTGCCCGTTGTGGTGATACCGGTTTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.24

Weight (kDa)

8.68

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 45
AccII CGCG 1 cut(s) 206
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 4 cut(s) 98, 190, 300, 373
AclWI GGATC 2 cut(s) 308, 321
AcsI RAATTY 1 cut(s) 350
AfaI GTAC 1 cut(s) 29
AfeI AGCGCT 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 306
AgeI ACCGGT 2 cut(s) 286, 398
AgsI TTSAA 2 cut(s) 85, 355
AhdI GACNNNNNGTC 1 cut(s) 287
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 1 cut(s) 236
Alw21I GWGCWC 1 cut(s) 259
AlwI GGATC 2 cut(s) 308, 321
Aor13HI TCCGGA 1 cut(s) 151
Aor51HI AGCGCT 1 cut(s) 176
AoxI GGCC 2 cut(s) 15, 338
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AsiGI ACCGGT 2 cut(s) 286, 398
AspLEI GCGC 2 cut(s) 177, 360
AspS9I GGNCC 5 cut(s) 15, 94, 149, 281, 289
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 4 cut(s) 94, 149, 281, 289
BaeGI GKGCMC 1 cut(s) 385
BamHI GGATCC 1 cut(s) 313
BauI CACGAG 2 cut(s) 252, 327
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 314
BccI CCATC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 238
BciVI GTATCC 1 cut(s) 235
BcnI CCSGG 1 cut(s) 147
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 1 cut(s) 378
BfoI RGCGCY 2 cut(s) 178, 361
BfuI GTATCC 1 cut(s) 235
BisI GCNGC 2 cut(s) 300, 303
BlsI GCNGC 2 cut(s) 301, 304
Bme1390I CCNGG 2 cut(s) 147, 238
Bme18I GGWCC 4 cut(s) 94, 149, 281, 289
BmeRI GACNNNNNGTC 1 cut(s) 287
BmgT120I GGNCC 5 cut(s) 15, 94, 149, 281, 289
BmiI GGNNCC 4 cut(s) 95, 96, 291, 315
BmrFI CCNGG 2 cut(s) 147, 238
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 246
BsaJI CCNNGG 3 cut(s) 11, 237, 317
BsaWI WCCGGW 3 cut(s) 151, 286, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 306
Bse118I RCCGGY 2 cut(s) 286, 398
Bse8I GATNNNNATC 1 cut(s) 246
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 3 cut(s) 11, 237, 317
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 17, 340
BshTI ACCGGT 2 cut(s) 286, 398
BsiEI CGRYCG 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 4 cut(s) 147, 152, 287, 399
BslFI GGGAC 3 cut(s) 107, 129, 275
BslI CCNNNNNNNGG 1 cut(s) 306
BsmFI GGGAC 3 cut(s) 107, 129, 275
BsnI GGCC 2 cut(s) 17, 340
Bsp1286I GDGCHC 2 cut(s) 259, 385
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 2 cut(s) 123, 313
Bsp68I TCGCGA 1 cut(s) 206
BspACI CCGC 4 cut(s) 98, 190, 300, 373
BspANI GGCC 2 cut(s) 17, 340
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 4 cut(s) 95, 96, 291, 315
BspPI GGATC 2 cut(s) 308, 321
BsrFI RCCGGY 2 cut(s) 286, 398
BssAI RCCGGY 2 cut(s) 286, 398
BssECI CCNNGG 3 cut(s) 11, 237, 317
BssMI GATC 2 cut(s) 123, 313
BssSI CACGAG 2 cut(s) 252, 327
BssT1I CCWWGG 1 cut(s) 11
Bst2BI CACGAG 2 cut(s) 252, 327
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 119, 348
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 2 cut(s) 178, 361
BstHHI GCGC 2 cut(s) 177, 360
BstKTI GATC 2 cut(s) 126, 316
BstMBI GATC 2 cut(s) 123, 313
BstMCI CGRYCG 1 cut(s) 323
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 145, 236
BstSLI GKGCMC 1 cut(s) 385
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuI GTATCC 1 cut(s) 235
BsuRI GGCC 2 cut(s) 17, 340
BtuMI TCGCGA 1 cut(s) 206
CfoI GCGC 2 cut(s) 177, 360
Cfr10I RCCGGY 2 cut(s) 286, 398
Cfr13I GGNCC 5 cut(s) 15, 94, 149, 281, 289
CpoI CGGWCCG 1 cut(s) 149
Csp6I GTAC 1 cut(s) 28
CspAI ACCGGT 2 cut(s) 286, 398
CspI CGGWCCG 1 cut(s) 149
CviJI RGCY 3 cut(s) 17, 310, 340
CviKI_1 RGCY 3 cut(s) 17, 310, 340
CviQI GTAC 1 cut(s) 28
DpnI GATC 2 cut(s) 125, 315
DpnII GATC 2 cut(s) 123, 313
DriI GACNNNNNGTC 1 cut(s) 287
Eam1104I CTCTTC 2 cut(s) 119, 348
Eam1105I GACNNNNNGTC 1 cut(s) 287
EarI CTCTTC 2 cut(s) 119, 348
Eco130I CCWWGG 1 cut(s) 11
Eco47I GGWCC 4 cut(s) 94, 149, 281, 289
Eco47III AGCGCT 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 11
FaiI YATR 4 cut(s) 57, 103, 105, 137
FaqI GGGAC 3 cut(s) 107, 129, 275
FauI CCCGC 2 cut(s) 105, 197
FauNDI CATATG 1 cut(s) 103
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 300, 303
Fsp4HI GCNGC 2 cut(s) 300, 303
FspBI CTAG 1 cut(s) 378
GlaI GCGC 2 cut(s) 176, 359
GluI GCNGC 2 cut(s) 300, 303
HaeII RGCGCY 2 cut(s) 178, 361
HaeIII GGCC 2 cut(s) 17, 340
HapII CCGG 4 cut(s) 147, 152, 287, 399
HhaI GCGC 2 cut(s) 177, 360
Hin6I GCGC 2 cut(s) 175, 358
HinP1I GCGC 2 cut(s) 175, 358
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 2 cut(s) 4, 166
HpaII CCGG 4 cut(s) 147, 152, 287, 399
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 1 cut(s) 46
Hpy188III TCNNGA 4 cut(s) 92, 152, 170, 205
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 3 cut(s) 50, 93, 278
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 89
HspAI GCGC 2 cut(s) 175, 358
KflI GGGWCCC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 151
Kzo9I GATC 2 cut(s) 123, 313
LpnPI CCDG 7 cut(s) 160, 165, 223, 250, 264, 296, 300
Lsp1109I GCAGC 1 cut(s) 314
MaeI CTAG 1 cut(s) 378
MalI GATC 2 cut(s) 125, 315
MboI GATC 2 cut(s) 123, 313
MboII GAAGA 2 cut(s) 106, 335
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 259, 385
MluCI AATT 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 207
MroI TCCGGA 1 cut(s) 151
MspI CCGG 4 cut(s) 147, 152, 287, 399
MspR9I CCNGG 2 cut(s) 147, 238
MvaI CCWGG 1 cut(s) 238
MvnI CGCG 1 cut(s) 206
NciI CCSGG 1 cut(s) 147
NdeI CATATG 1 cut(s) 103
NdeII GATC 2 cut(s) 123, 313
NlaIV GGNNCC 4 cut(s) 95, 96, 291, 315
NruI TCGCGA 1 cut(s) 206
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 325
PfeI GAWTC 2 cut(s) 4, 166
PinAI ACCGGT 2 cut(s) 286, 398
PkrI GCNGC 2 cut(s) 301, 304
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 4 cut(s) 95, 96, 291, 315
PspPI GGNCC 5 cut(s) 15, 94, 149, 281, 289
PspPPI RGGWCCY 1 cut(s) 94
PsuI RGATCY 1 cut(s) 313
RruI TCGCGA 1 cut(s) 206
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
Rsr2I CGGWCCG 1 cut(s) 149
RsrII CGGWCCG 1 cut(s) 149
SalI GTCGAC 1 cut(s) 44
SatI GCNGC 2 cut(s) 300, 303
Sau3AI GATC 2 cut(s) 123, 313
Sau96I GGNCC 5 cut(s) 15, 94, 149, 281, 289
ScrFI CCNGG 2 cut(s) 147, 238
SduI GDGCHC 2 cut(s) 259, 385
SetI ASST 2 cut(s) 212, 221
SinI GGWCC 4 cut(s) 94, 149, 281, 289
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 1 cut(s) 350
SsiI CCGC 4 cut(s) 98, 190, 300, 373
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 2 cut(s) 145, 236
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 2 cut(s) 45, 406
TaqII GACCGA 1 cut(s) 309
TasI AATT 1 cut(s) 350
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 2 cut(s) 4, 166
TseI GCWGC 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 262
VpaK11BI GGWCC 4 cut(s) 94, 149, 281, 289
XapI RAATTY 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.