Rroxscaffold_2G00143580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000214
Physical Location & Seq
Forward (+)
81559971 .. 81560954
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143580.1

Sequence Viewer

Length: 327 bp
ATGAACCTTTGGTTGCTTTTGAAGAAATGGGCCGCAACTCGGCCCGTATCGAGACGGGCCACTCGGGCAAGGCGATGCCATAGCGGCGAAACTCCTCGTGGAGGAACTTTGCTTGAAATTGAGCTTTGCGGGCCAATCTCTCGTAGGCCTCCTCGAAAACCGAGAGCATGGATTCGCGAAGTAATGGGTATGAGCCACCTCATGGCCATTCCCACACTTCATGCTAACGAATGGTGGCTGCCAAAGGTGAAGAGGGCGCGAGAGACTCAAGCCGATATTCGGTTCCTTCACTCTCTCGTCCCTCCCGCGGATAATGGCGCGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.36

Weight (kDa)

11.58

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 202
AccII CGCG 4 cut(s) 177, 259, 308, 320
AciI CCGC 6 cut(s) 33, 84, 129, 306, 308, 320
AcoI YGGCCR 1 cut(s) 204
AfiI CCNNNNNNNGG 5 cut(s) 39, 101, 202, 279, 307
AgsI TTSAA 2 cut(s) 22, 116
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 46, 257
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 6 cut(s) 30, 41, 57, 131, 146, 204
ApeKI GCWGC 1 cut(s) 238
AspLEI GCGC 2 cut(s) 259, 320
AspS9I GGNCC 4 cut(s) 30, 42, 57, 131
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 63
BalI TGGCCA 1 cut(s) 206
BauI CACGAG 1 cut(s) 96
BbvI GCAGC 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 46, 257
BglI GCCNNNNNGGC 2 cut(s) 65, 84
BisI GCNGC 4 cut(s) 33, 85, 239, 321
BlsI GCNGC 4 cut(s) 34, 86, 240, 322
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 4 cut(s) 30, 42, 57, 131
BmiI GGNNCC 1 cut(s) 284
BmsI GCATC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 101, 202, 279, 307
BseDI CCNNGG 1 cut(s) 306
BseLI CCNNNNNNNGG 5 cut(s) 39, 101, 202, 279, 307
BseRI GAGGAG 2 cut(s) 84, 141
BseXI GCAGC 1 cut(s) 225
Bsh1236I CGCG 4 cut(s) 177, 259, 308, 320
BshFI GGCC 6 cut(s) 32, 43, 59, 133, 148, 206
BsiHKCI CYCGRG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 5 cut(s) 39, 101, 202, 279, 307
BsmAI GTCTC 2 cut(s) 46, 257
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 6 cut(s) 32, 43, 59, 133, 148, 206
BsoBI CYCGRG 1 cut(s) 63
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 6 cut(s) 33, 84, 129, 306, 308, 320
BspANI GGCC 6 cut(s) 32, 43, 59, 133, 148, 206
BspFNI CGCG 4 cut(s) 177, 259, 308, 320
BspLI GGNNCC 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 306
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 131
BstDSI CCRYGG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 99
BstFNI CGCG 4 cut(s) 177, 259, 308, 320
BstHHI GCGC 2 cut(s) 259, 320
BstMAI GTCTC 2 cut(s) 46, 257
BstMWI GCNNNNNNNGC 3 cut(s) 65, 84, 130
BstUI CGCG 4 cut(s) 177, 259, 308, 320
BstV1I GCAGC 1 cut(s) 225
BsuRI GGCC 6 cut(s) 32, 43, 59, 133, 148, 206
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 88
BtuMI TCGCGA 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 131
CfoI GCGC 2 cut(s) 259, 320
Cfr13I GGNCC 4 cut(s) 30, 42, 57, 131
Cfr42I CCGCGG 1 cut(s) 309
CviAII CATG 3 cut(s) 168, 202, 221
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco147I AGGCCT 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 3 cut(s) 171, 205, 224
FaiI YATR 6 cut(s) 81, 169, 191, 203, 222, 325
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 167, 201, 220
FauI CCCGC 2 cut(s) 122, 313
Fnu4HI GCNGC 4 cut(s) 33, 85, 239, 321
Fsp4HI GCNGC 4 cut(s) 33, 85, 239, 321
GlaI GCGC 2 cut(s) 258, 319
GluI GCNGC 4 cut(s) 33, 85, 239, 321
HaeIII GGCC 6 cut(s) 32, 43, 59, 133, 148, 206
HhaI GCGC 2 cut(s) 259, 320
Hin1II CATG 3 cut(s) 171, 205, 224
Hin6I GCGC 2 cut(s) 257, 318
HinP1I GCGC 2 cut(s) 257, 318
HinfI GANTC 2 cut(s) 172, 265
HphI GGTGA 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 51, 176
HpyAV CCTTC 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 84, 130
Hsp92II CATG 3 cut(s) 171, 205, 224
HspAI GCGC 2 cut(s) 257, 318
KspI CCGCGG 1 cut(s) 309
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 1 cut(s) 65
MboII GAAGA 2 cut(s) 34, 262
MlsI TGGCCA 1 cut(s) 206
MluCI AATT 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 206
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 7 cut(s) 95, 105, 159, 162, 209, 246, 312
Mox20I TGGCCA 1 cut(s) 206
MscI TGGCCA 1 cut(s) 206
Msp20I TGGCCA 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 308
MvnI CGCG 4 cut(s) 177, 259, 308, 320
MwoI GCNNNNNNNGC 3 cut(s) 65, 84, 130
NlaIII CATG 3 cut(s) 171, 205, 224
NlaIV GGNNCC 1 cut(s) 284
NmeAIII GCCGAG 1 cut(s) 19
NruI TCGCGA 1 cut(s) 177
PceI AGGCCT 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PfeI GAWTC 1 cut(s) 172
PflMI CCANNNNNTGG 1 cut(s) 202
PkrI GCNGC 4 cut(s) 34, 86, 240, 322
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 4 cut(s) 30, 42, 57, 131
RruI TCGCGA 1 cut(s) 177
SacII CCGCGG 1 cut(s) 309
SatI GCNGC 4 cut(s) 33, 85, 239, 321
Sau96I GGNCC 4 cut(s) 30, 42, 57, 131
SchI GAGTC 1 cut(s) 259
SetI ASST 4 cut(s) 9, 126, 201, 249
SfaNI GCATC 1 cut(s) 65
Sfr303I CCGCGG 1 cut(s) 309
SgrBI CCGCGG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 1 cut(s) 117
SseBI AGGCCT 1 cut(s) 148
SsiI CCGC 6 cut(s) 33, 84, 129, 306, 308, 320
StuI AGGCCT 1 cut(s) 148
TaqI TCGA 2 cut(s) 50, 154
TasI AATT 1 cut(s) 117
TauI GCSGC 3 cut(s) 35, 87, 323
TfiI GAWTC 1 cut(s) 172
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 17, 209
Van91I CCANNNNNTGG 1 cut(s) 202
XagI CCTNNNNNAGG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.