Rmu_sc0032899.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032899.1
OG0000214
Physical Location & Seq
Reverse (-)
237 .. 509
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032899.1_g000001.1.cds

Sequence Viewer

Length: 273 bp
atggcacctaagaaaccattcgttatctatcaggcagatgaaatcactgagaaagccgcattcacctggtggactaacatggttgttcgatgcagaagtcagatcggagaggagagaagtcgactgatgggctttggtggacgtgataatcaagcgagcctgggtcccacaccttgcgatcgtttgccagatgatgttatggcctattatgggcttcccatccgcagtcccataactgctctttggcaggtgcttggtgattttagcagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.16

Weight (kDa)

6.15

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 121
AciI CCGC 2 cut(s) 57, 223
AdeI CACNNNGTG 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 210
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 2 cut(s) 65, 159
AoxI GGCC 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 55, 269
AvaII GGWCC 1 cut(s) 164
BanI GGYRCC 1 cut(s) 4
BccI CCATC 2 cut(s) 121, 227
BciT130I CCWGG 2 cut(s) 67, 161
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 2 cut(s) 67, 161
Bme18I GGWCC 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 3 cut(s) 6, 165, 166
BmrFI CCNGG 2 cut(s) 67, 161
BmsI GCATC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 210
BseBI CCWGG 2 cut(s) 67, 161
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 181
BslFI GGGAC 2 cut(s) 150, 213
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 2 cut(s) 150, 213
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 102, 178
BspACI CCGC 2 cut(s) 57, 223
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 3 cut(s) 6, 165, 166
BspMI ACCTGC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 102, 178
Bst2UI CCWGG 2 cut(s) 67, 161
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 2 cut(s) 9, 48
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 2 cut(s) 105, 181
BstMBI GATC 2 cut(s) 102, 178
BstMCI CGRYCG 1 cut(s) 181
BstNI CCWGG 2 cut(s) 67, 161
BstSCI CCNGG 2 cut(s) 65, 159
BsuRI GGCC 1 cut(s) 203
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 65
CviAII CATG 1 cut(s) 79
CviJI RGCY 5 cut(s) 56, 132, 159, 203, 214
CviKI_1 RGCY 5 cut(s) 56, 132, 159, 203, 214
DdeI CTNAG 2 cut(s) 9, 48
DpnI GATC 2 cut(s) 104, 180
DpnII GATC 2 cut(s) 102, 178
DraIII CACNNNGTG 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 65, 159
FaeI CATG 1 cut(s) 82
FaiI YATR 4 cut(s) 80, 200, 210, 233
FaqI GGGAC 2 cut(s) 150, 213
FatI CATG 1 cut(s) 78
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 203
Hin1II CATG 1 cut(s) 82
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HphI GGTGA 2 cut(s) 55, 269
Hpy166II GTNNAC 3 cut(s) 72, 122, 140
Hpy188I TCNGA 2 cut(s) 102, 107
Hpy8I GTNNAC 3 cut(s) 72, 122, 140
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 93
HpyF3I CTNAG 2 cut(s) 9, 48
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 1 cut(s) 82
KflI GGGWCCC 1 cut(s) 164
Kzo9I GATC 2 cut(s) 102, 178
LpnPI CCDG 7 cut(s) 17, 52, 79, 146, 173, 201, 233
LweI GCATC 1 cut(s) 80
MabI ACCWGGT 1 cut(s) 65
MaeII ACGT 1 cut(s) 142
MalI GATC 2 cut(s) 104, 180
MboI GATC 2 cut(s) 102, 178
MnlI CCTC 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 17
MspR9I CCNGG 2 cut(s) 67, 161
Mva1269I GAATGC 1 cut(s) 59
MvaI CCWGG 2 cut(s) 67, 161
NdeII GATC 2 cut(s) 102, 178
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 3 cut(s) 6, 165, 166
PaqCI CACCTGC 1 cut(s) 238
PctI GAATGC 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 58
Ple19I CGATCG 1 cut(s) 181
PpuMI RGGWCCY 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 65, 159
PspGI CCWGG 2 cut(s) 65, 159
PspN4I GGNNCC 3 cut(s) 6, 165, 166
PspPI GGNCC 1 cut(s) 164
PspPPI RGGWCCY 1 cut(s) 164
PvuI CGATCG 1 cut(s) 181
SalI GTCGAC 1 cut(s) 120
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 102, 178
Sau96I GGNCC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 67, 161
SetI ASST 5 cut(s) 10, 68, 145, 175, 252
SexAI ACCWGGT 1 cut(s) 65
SfaNI GCATC 1 cut(s) 80
SinI GGWCC 1 cut(s) 164
SsiI CCGC 2 cut(s) 57, 223
StyD4I CCNGG 2 cut(s) 65, 159
TaiI ACGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 88, 121
TauI GCSGC 1 cut(s) 59
TscAI CASTG 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.