Rmu_sc0000389.1_g000011

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000389.1
OG0000214
Physical Location & Seq
Reverse (-)
57998 .. 58846
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000389.1_g000011.1.cds

Sequence Viewer

Length: 849 bp
atgggctttggtggaggtgataaccaagcgagtctgggtcccacacctcgcgatcatttgccagatgatgctatggcgtattatgggcttcccatccgccgtcccataacggctctttggcatgtgcctggtgattttagcagttgggggccaaggaggaaagtgggtttctggcctaccattgctcccgaggaaaatgtttggtatcagaaggtccgagcgagagatttggcccgttgggatgcagtgggtatcacccaaaccatcgatctatgcttctgtctttcccataataccagccctgcaccgctagccaccgctctttgcttctggaatacctccagcaatacattcgattttcggtttgggcagatgagcataactctgctggatgttcttaatatcacggggttgcccattgactttgacccctatgtgcatggtcaatttgatggcattcaatttcctttgataatggatatggctggtcgggggcatcacagcaaatcctacctattctggggcgactattactgcacccagattgaccacacagaaggtatcgcattcctggaattcaggttttacaaatttatcttttacacttcctccaacaaacctactgggccgtggaattctctgcccactgctctctacaatggtatttgcgttggcctagggcaacctgtattgggtgcattatatcgctcactttataaacttgtaatgtgccccttcgataccgacattagtggccctttctggatcctcgccttttggctgcagatttatttccctcgcttccgtcgcggtgatattccaaaggatcctccagtcgattccctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

282

Amino Acids

32.03

Weight (kDa)

6.14

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 717
AccBSI CCGCTC 1 cut(s) 320
AccII CGCG 2 cut(s) 51, 810
AciI CCGC 4 cut(s) 97, 308, 318, 810
AclWI GGATC 4 cut(s) 760, 773, 821, 834
AcsI RAATTY 3 cut(s) 575, 590, 634
AfiI CCNNNNNNNGG 2 cut(s) 520, 692
AgsI TTSAA 1 cut(s) 461
AjnI CCWGG 2 cut(s) 127, 570
AlwI GGATC 4 cut(s) 760, 773, 821, 834
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 6 cut(s) 149, 173, 231, 626, 673, 754
ApeKI GCWGC 1 cut(s) 781
ApoI RAATTY 3 cut(s) 575, 590, 634
AspA2I CCTAGG 1 cut(s) 676
AspS9I GGNCC 6 cut(s) 38, 149, 214, 232, 626, 755
AsuHPI GGTGA 4 cut(s) 29, 143, 247, 824
AsuNHI GCTAGC 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 2 cut(s) 38, 214
AvrII CCTAGG 1 cut(s) 676
BaeGI GKGCMC 1 cut(s) 734
BamHI GGATCC 2 cut(s) 765, 826
BbvI GCAGC 1 cut(s) 768
BccI CCATC 3 cut(s) 101, 272, 446
BceAI ACGGC 3 cut(s) 84, 126, 613
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 2 cut(s) 129, 572
BfaI CTAG 2 cut(s) 311, 677
BfmI CTRYAG 1 cut(s) 782
BisI GCNGC 1 cut(s) 782
BlnI CCTAGG 1 cut(s) 676
BlsI GCNGC 1 cut(s) 783
Bme1390I CCNGG 2 cut(s) 129, 572
Bme18I GGWCC 2 cut(s) 38, 214
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 6 cut(s) 38, 149, 214, 232, 626, 755
BmiI GGNNCC 5 cut(s) 39, 40, 150, 767, 828
BmrFI CCNGG 2 cut(s) 129, 572
BmrI ACTGGG 1 cut(s) 633
BmsI GCATC 3 cut(s) 58, 232, 505
BmtI GCTAGC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 633
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BpmI CTGGAG 2 cut(s) 325, 816
Bsa29I ATCGAT 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 152, 189, 629, 676
BsaXI ACNNNNNCTCC 4 cut(s) 169, 199, 593, 623
Bsc4I CCNNNNNNNGG 2 cut(s) 520, 692
Bse1I ACTGG 2 cut(s) 628, 833
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 129, 572
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 4 cut(s) 152, 189, 629, 676
BseGI GGATG 3 cut(s) 93, 247, 397
BseLI CCNNNNNNNGG 2 cut(s) 520, 692
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 628, 833
BseSI GKGCMC 1 cut(s) 734
BseXI GCAGC 1 cut(s) 768
BsgI GTGCAG 2 cut(s) 288, 520
Bsh1236I CGCG 2 cut(s) 51, 810
BshFI GGCC 6 cut(s) 151, 175, 233, 628, 675, 756
BshVI ATCGAT 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 188
BslFI GGGAC 2 cut(s) 24, 87
BslI CCNNNNNNNGG 2 cut(s) 520, 692
BsmFI GGGAC 2 cut(s) 24, 87
BsmI GAATGC 2 cut(s) 456, 566
BsnI GGCC 6 cut(s) 151, 175, 233, 628, 675, 756
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 734
Bsp143I GATC 4 cut(s) 52, 268, 765, 826
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 4 cut(s) 97, 308, 318, 810
BspANI GGCC 6 cut(s) 151, 175, 233, 628, 675, 756
BspDI ATCGAT 1 cut(s) 267
BspFNI CGCG 2 cut(s) 51, 810
BspLI GGNNCC 5 cut(s) 39, 40, 150, 767, 828
BspMAI CTGCAG 1 cut(s) 786
BspOI GCTAGC 1 cut(s) 314
BspPI GGATC 4 cut(s) 760, 773, 821, 834
BsrBI CCGCTC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 2 cut(s) 628, 833
BssECI CCNNGG 4 cut(s) 152, 189, 629, 676
BssMI GATC 4 cut(s) 52, 268, 765, 826
BssT1I CCWWGG 2 cut(s) 152, 676
Bst2UI CCWGG 2 cut(s) 129, 572
BstC8I GCNNGC 1 cut(s) 312
BstDSI CCRYGG 1 cut(s) 629
BstF5I GGATG 3 cut(s) 93, 247, 397
BstFNI CGCG 2 cut(s) 51, 810
BstKTI GATC 4 cut(s) 55, 271, 768, 829
BstMBI GATC 4 cut(s) 52, 268, 765, 826
BstMWI GCNNNNNNNGC 2 cut(s) 311, 807
BstNI CCWGG 2 cut(s) 129, 572
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 127, 570
BstSFI CTRYAG 1 cut(s) 782
BstSLI GKGCMC 1 cut(s) 734
BstUI CGCG 2 cut(s) 51, 810
BstV1I GCAGC 1 cut(s) 768
BstX2I RGATCY 2 cut(s) 765, 826
BstYI RGATCY 2 cut(s) 765, 826
Bsu15I ATCGAT 1 cut(s) 267
BsuRI GGCC 6 cut(s) 151, 175, 233, 628, 675, 756
BsuTUI ATCGAT 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 629
BtsCI GGATG 3 cut(s) 93, 247, 397
BtsI GCAGTG 2 cut(s) 252, 645
BtsIMutI CAGTG 2 cut(s) 252, 645
BtuMI TCGCGA 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 312
Cfr13I GGNCC 6 cut(s) 38, 149, 214, 232, 626, 755
ClaI ATCGAT 1 cut(s) 267
CviAII CATG 2 cut(s) 122, 440
DpnI GATC 4 cut(s) 54, 270, 767, 828
DpnII GATC 4 cut(s) 52, 268, 765, 826
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 2 cut(s) 152, 676
Eco47I GGWCC 2 cut(s) 38, 214
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 2 cut(s) 575, 634
EcoRII CCWGG 2 cut(s) 127, 570
EcoT14I CCWWGG 2 cut(s) 152, 676
ErhI CCWWGG 2 cut(s) 152, 676
FaeI CATG 2 cut(s) 125, 443
FaqI GGGAC 2 cut(s) 24, 87
FatI CATG 2 cut(s) 121, 439
Fnu4HI GCNGC 1 cut(s) 782
FokI GGATG 3 cut(s) 80, 254, 404
Fsp4HI GCNGC 1 cut(s) 782
FspBI CTAG 2 cut(s) 311, 677
GluI GCNGC 1 cut(s) 782
GsuI CTGGAG 2 cut(s) 325, 816
HaeIII GGCC 6 cut(s) 151, 175, 233, 628, 675, 756
Hin1II CATG 2 cut(s) 125, 443
HinfI GANTC 2 cut(s) 31, 839
HphI GGTGA 4 cut(s) 29, 143, 247, 824
Hpy188I TCNGA 2 cut(s) 210, 218
Hpy188III TCNNGA 4 cut(s) 50, 188, 331, 763
Hpy99I CGWCG 1 cut(s) 810
HpyAV CCTTC 3 cut(s) 205, 551, 745
HpyCH4V TGCA 6 cut(s) 245, 305, 439, 537, 698, 784
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 807
Hsp92II CATG 2 cut(s) 125, 443
KflI GGGWCCC 1 cut(s) 38
Kzo9I GATC 4 cut(s) 52, 268, 765, 826
LmnI GCTCC 1 cut(s) 190
Lsp1109I GCAGC 1 cut(s) 768
LweI GCATC 3 cut(s) 58, 232, 505
MaeI CTAG 2 cut(s) 311, 677
MalI GATC 4 cut(s) 54, 270, 767, 828
MbiI CCGCTC 1 cut(s) 320
MboI GATC 4 cut(s) 52, 268, 765, 826
MflI RGATCY 2 cut(s) 765, 826
MhlI GDGCHC 1 cut(s) 734
MluCI AATT 5 cut(s) 446, 461, 575, 590, 634
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 636
MnlI CCTC 9 cut(s) 8, 57, 150, 184, 349, 619, 779, 807, 840
MseI TTAA 1 cut(s) 399
MspR9I CCNGG 2 cut(s) 129, 572
Mva1269I GAATGC 2 cut(s) 456, 566
MvaI CCWGG 2 cut(s) 129, 572
MvnI CGCG 2 cut(s) 51, 810
MwoI GCNNNNNNNGC 2 cut(s) 311, 807
NdeII GATC 4 cut(s) 52, 268, 765, 826
NheI GCTAGC 1 cut(s) 310
NlaIII CATG 2 cut(s) 125, 443
NlaIV GGNNCC 5 cut(s) 39, 40, 150, 767, 828
NruI TCGCGA 1 cut(s) 51
NspI RCATGY 1 cut(s) 125
PctI GAATGC 2 cut(s) 456, 566
PfeI GAWTC 1 cut(s) 839
PfoI TCCNGGA 1 cut(s) 570
PkrI GCNGC 1 cut(s) 783
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 38
PsiI TTATAA 1 cut(s) 717
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 127, 570
PspGI CCWGG 2 cut(s) 127, 570
PspN4I GGNNCC 5 cut(s) 39, 40, 150, 767, 828
PspPI GGNCC 6 cut(s) 38, 149, 214, 232, 626, 755
PspPPI RGGWCCY 1 cut(s) 38
PstI CTGCAG 1 cut(s) 786
PsuI RGATCY 2 cut(s) 765, 826
RruI TCGCGA 1 cut(s) 51
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 1 cut(s) 782
Sau3AI GATC 4 cut(s) 52, 268, 765, 826
Sau96I GGNCC 6 cut(s) 38, 149, 214, 232, 626, 755
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 129, 572
SduI GDGCHC 1 cut(s) 734
SetI ASST 9 cut(s) 19, 49, 216, 341, 516, 562, 584, 622, 688
SfaNI GCATC 3 cut(s) 58, 232, 505
SfcI CTRYAG 1 cut(s) 782
SinI GGWCC 2 cut(s) 38, 214
Sse9I AATT 5 cut(s) 446, 461, 575, 590, 634
SsiI CCGC 4 cut(s) 97, 308, 318, 810
SspMI CTAG 2 cut(s) 311, 677
StyD4I CCNGG 2 cut(s) 127, 570
StyI CCWWGG 2 cut(s) 152, 676
TaqI TCGA 4 cut(s) 267, 354, 738, 837
TasI AATT 5 cut(s) 446, 461, 575, 590, 634
TfiI GAWTC 1 cut(s) 839
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 2 cut(s) 252, 652
TseI GCWGC 1 cut(s) 781
TspGWI ACGGA 1 cut(s) 794
TspRI CASTG 2 cut(s) 252, 652
VpaK11BI GGWCC 2 cut(s) 38, 214
XapI RAATTY 3 cut(s) 575, 590, 634
XceI RCATGY 1 cut(s) 125
XmaJI CCTAGG 1 cut(s) 676
XspI CTAG 2 cut(s) 311, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.