Rmu_sc0004598.1_g000035

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004598.1
OG0000214
Physical Location & Seq
Forward (+)
141414 .. 141833
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004598.1_g000035.1.cds

Sequence Viewer

Length: 336 bp
atgagggtgttagaggtaactcctccttctgctgtggatgaggctaagatggagaaggttttgactctgtggcaatttagtgctatcgactctctgctgaatgaacttgatatggcccaccaacatcaatcggccgcgaacacccaggctcgcgacgctcaagaggctttgaatagtgtctctcgagaaatggacatctcccgcgatattttaaatgaacgatccatccgcctgcgggaactacaaatccaaagatccgacttcaaacttcagatcgaggacctccaagcacatttagcctttgttgagaatgcgattattgcagaagaagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.66

Weight (kDa)

4.67

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 137, 153, 204
AciI CCGC 4 cut(s) 135, 202, 229, 235
AclWI GGATC 2 cut(s) 216, 249
AcoI YGGCCR 1 cut(s) 132
AcuI CTGAAG 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 2 cut(s) 172, 265
AjnI CCWGG 1 cut(s) 144
AloI GAACNNNNNNTCC 4 cut(s) 210, 231, 242, 263
AluBI AGCT 1 cut(s) 332
AluI AGCT 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 2 cut(s) 216, 249
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 2 cut(s) 114, 132
AspS9I GGNCC 2 cut(s) 115, 280
AvaI CYCGRG 1 cut(s) 183
AvaII GGWCC 1 cut(s) 280
BccI CCATC 2 cut(s) 43, 233
BciT130I CCWGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 184
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 115, 280
BmrFI CCNGG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 43, 225
BseLI CCNNNNNNNGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 12
BseX3I CGGCCG 1 cut(s) 132
Bsh1236I CGCG 3 cut(s) 137, 153, 204
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 116, 134
BsiEI CGRYCG 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 184
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 2 cut(s) 116, 134
BsoBI CYCGRG 1 cut(s) 183
Bsp143I GATC 3 cut(s) 221, 254, 273
Bsp68I TCGCGA 1 cut(s) 153
BspACI CCGC 4 cut(s) 135, 202, 229, 235
BspANI GGCC 2 cut(s) 116, 134
BspFNI CGCG 3 cut(s) 137, 153, 204
BspPI GGATC 2 cut(s) 216, 249
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 3 cut(s) 221, 254, 273
Bst2UI CCWGG 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 151, 233
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 43, 225
BstFNI CGCG 3 cut(s) 137, 153, 204
BstKTI GATC 3 cut(s) 224, 257, 276
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 3 cut(s) 221, 254, 273
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 5 cut(s) 155, 164, 296, 320, 329
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstUI CGCG 3 cut(s) 137, 153, 204
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BstZI CGGCCG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 116, 134
BtsCI GGATG 2 cut(s) 43, 225
BtuMI TCGCGA 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 151, 233
Cfr13I GGNCC 2 cut(s) 115, 280
CseI GACGC 1 cut(s) 164
CviJI RGCY 7 cut(s) 44, 116, 134, 149, 167, 299, 332
CviKI_1 RGCY 7 cut(s) 44, 116, 134, 149, 167, 299, 332
DdeI CTNAG 1 cut(s) 45
DpnI GATC 3 cut(s) 223, 256, 275
DpnII GATC 3 cut(s) 221, 254, 273
DraI TTTAAA 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 132
EagI CGGCCG 1 cut(s) 132
EciI GGCGGA 1 cut(s) 218
EclXI CGGCCG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 280
Eco52I CGGCCG 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 144
FaiI YATR 1 cut(s) 113
FauI CCCGC 2 cut(s) 209, 228
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 2 cut(s) 50, 212
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 116, 134
HgaI GACGC 1 cut(s) 164
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 2 cut(s) 64, 89
Hpy188I TCNGA 2 cut(s) 259, 273
Hpy188III TCNNGA 4 cut(s) 152, 161, 183, 185
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 36, 49
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 164, 296, 320, 329
HpyF3I CTNAG 1 cut(s) 45
Kzo9I GATC 3 cut(s) 221, 254, 273
LpnPI CCDG 3 cut(s) 131, 158, 245
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 223, 256, 275
MboI GATC 3 cut(s) 221, 254, 273
MflI RGATCY 1 cut(s) 254
MluCI AATT 1 cut(s) 74
MlyI GAGTC 2 cut(s) 58, 83
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 6 cut(s) 7, 33, 34, 157, 271, 293
MseI TTAA 2 cut(s) 212, 334
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 3 cut(s) 137, 153, 204
MwoI GCNNNNNNNGC 5 cut(s) 155, 164, 296, 320, 329
NdeII GATC 3 cut(s) 221, 254, 273
NruI TCGCGA 1 cut(s) 153
PaeR7I CTCGAG 1 cut(s) 183
PctI GAATGC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 2 cut(s) 58, 83
PpsI GAGTC 2 cut(s) 58, 83
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspPI GGNCC 2 cut(s) 115, 280
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 1 cut(s) 254
RruI TCGCGA 1 cut(s) 153
SaqAI TTAA 2 cut(s) 212, 334
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 3 cut(s) 221, 254, 273
Sau96I GGNCC 2 cut(s) 115, 280
SchI GAGTC 2 cut(s) 58, 83
ScrFI CCNGG 1 cut(s) 146
SetI ASST 4 cut(s) 18, 60, 285, 334
Sfr274I CTCGAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 280
SlaI CTCGAG 1 cut(s) 183
SmlI CTYRAG 2 cut(s) 159, 183
SmoI CTYRAG 2 cut(s) 159, 183
Sse9I AATT 1 cut(s) 74
SsiI CCGC 4 cut(s) 135, 202, 229, 235
StyD4I CCNGG 1 cut(s) 144
TaqI TCGA 3 cut(s) 87, 184, 276
TasI AATT 1 cut(s) 74
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 212, 334
Tru9I TTAA 2 cut(s) 212, 334
TspDTI ATGAA 2 cut(s) 117, 231
VpaK11BI GGWCC 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.