Rmu_sc0001796.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001796.1
OG0000214
Physical Location & Seq
Reverse (-)
55859 .. 56527
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001796.1_g000010.1.cds

Sequence Viewer

Length: 669 bp
atggcacctaagaaaccattcgttattgttcaggcagatgtaatcactgagaaaaccgcattcacctggcggactatcgtgggtgttcgatgcagaagtcagaccggagaggagagaagtcgactgatgagctttggtggagctgataatcaagcgagtctgggtcccacacctcgcgatcgtttaccagttgatgttatggcctattataggcttcccatacgccatcccataacggctctttggcaggtgcccggtgattttagcagttgggggccaaggaggaaagtgggtttctggcctaccatcgttcccgaggaaaatgtttggtatcaggaggttcgagcgagagatttggcccgttgggatgcggtgggtatcacccaaaccatagatctatgcttctgtcttccccataataccagccctgcactgctagccgccgctctttgcttctggaacacctccagcaatacattcgatttccagtttgggcagatgagcataattctgttggatgttcttactatcacggggttgcccattaactttgacctctatgtgcatggtcagtttgatggcattcaatttcctttgagaatggatatggctagtcgggggcatcacagcaaatcctacccattctggcgtcactattactgcatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

222

Amino Acids

25.43

Weight (kDa)

8.64

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 238
AccB1I GGYRCC 2 cut(s) 4, 250
AccBSI CCGCTC 1 cut(s) 446
AccI GTMKAC 1 cut(s) 121
AccII CGCG 1 cut(s) 177
AciI CCGC 5 cut(s) 57, 70, 371, 441, 444
AcyI GRCGYC 1 cut(s) 649
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 587
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 2 cut(s) 132, 143
AluI AGCT 2 cut(s) 132, 143
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 4 cut(s) 201, 275, 299, 357
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 164, 275, 358
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 55, 269, 373
AsuNHI GCTAGC 1 cut(s) 436
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 255
BanI GGYRCC 2 cut(s) 4, 250
BbsI GAAGAC 1 cut(s) 401
BccI CCATC 3 cut(s) 234, 314, 572
BceAI ACGGC 1 cut(s) 252
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 1 cut(s) 67
BcnI CCSGG 1 cut(s) 255
BfaI CTAG 3 cut(s) 437, 612, 667
BfuAI ACCTGC 1 cut(s) 238
BglII AGATCT 1 cut(s) 394
BisI GCNGC 2 cut(s) 441, 444
BlsI GCNGC 2 cut(s) 442, 445
Bme1390I CCNGG 2 cut(s) 67, 255
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 3 cut(s) 164, 275, 358
BmiI GGNNCC 5 cut(s) 6, 165, 166, 252, 276
BmrFI CCNGG 2 cut(s) 67, 255
BmsI GCATC 3 cut(s) 80, 358, 631
BmtI GCTAGC 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 451
BpuMI CCSGG 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 649
BsaJI CCNNGG 2 cut(s) 278, 315
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 188, 487
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 2 cut(s) 278, 315
BseGI GGATG 3 cut(s) 226, 373, 523
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 188, 487
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 4 cut(s) 203, 277, 301, 359
BshNI GGYRCC 2 cut(s) 4, 250
BsiEI CGRYCG 1 cut(s) 181
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 2 cut(s) 105, 255
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 2 cut(s) 59, 582
BsnI GGCC 4 cut(s) 203, 277, 301, 359
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 2 cut(s) 178, 394
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 5 cut(s) 57, 70, 371, 441, 444
BspANI GGCC 4 cut(s) 203, 277, 301, 359
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 5 cut(s) 6, 165, 166, 252, 276
BspMI ACCTGC 1 cut(s) 238
BspOI GCTAGC 1 cut(s) 440
BspT107I GGYRCC 2 cut(s) 4, 250
BsrBI CCGCTC 1 cut(s) 446
BsrI ACTGG 2 cut(s) 188, 487
BssECI CCNNGG 2 cut(s) 278, 315
BssMI GATC 2 cut(s) 178, 394
BssNI GRCGYC 1 cut(s) 649
BssT1I CCWWGG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 649
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 2 cut(s) 9, 48
BstENI CCTNNNNNAGG 1 cut(s) 208
BstF5I GGATG 3 cut(s) 226, 373, 523
BstFNI CGCG 1 cut(s) 177
BstKTI GATC 2 cut(s) 181, 397
BstMBI GATC 2 cut(s) 178, 394
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 65, 253
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 4 cut(s) 203, 277, 301, 359
BtsCI GGATG 3 cut(s) 226, 373, 523
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 2 cut(s) 45, 431
BtuMI TCGCGA 1 cut(s) 177
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 438
Cfr13I GGNCC 3 cut(s) 164, 275, 358
CseI GACGC 1 cut(s) 638
CviAII CATG 1 cut(s) 566
DdeI CTNAG 2 cut(s) 9, 48
DpnI GATC 2 cut(s) 180, 396
DpnII GATC 2 cut(s) 178, 394
EciI GGCGGA 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 314
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 1 cut(s) 569
FaqI GGGAC 1 cut(s) 150
FatI CATG 1 cut(s) 565
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 441, 444
FokI GGATG 3 cut(s) 213, 380, 530
Fsp4HI GCNGC 2 cut(s) 441, 444
FspBI CTAG 3 cut(s) 437, 612, 667
GluI GCNGC 2 cut(s) 441, 444
GsuI CTGGAG 1 cut(s) 451
HaeIII GGCC 4 cut(s) 203, 277, 301, 359
HapII CCGG 2 cut(s) 105, 255
HgaI GACGC 1 cut(s) 638
Hin1I GRCGYC 1 cut(s) 649
Hin1II CATG 1 cut(s) 569
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HinfI GANTC 1 cut(s) 157
HpaII CCGG 2 cut(s) 105, 255
HphI GGTGA 3 cut(s) 55, 269, 373
Hpy166II GTNNAC 2 cut(s) 122, 185
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 4 cut(s) 176, 314, 335, 457
Hpy8I GTNNAC 2 cut(s) 122, 185
HpyCH4V TGCA 4 cut(s) 93, 431, 565, 663
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 2 cut(s) 9, 48
Hsp92I GRCGYC 1 cut(s) 649
Hsp92II CATG 1 cut(s) 569
KflI GGGWCCC 1 cut(s) 164
Kzo9I GATC 2 cut(s) 178, 394
LmnI GCTCC 1 cut(s) 140
LweI GCATC 3 cut(s) 80, 358, 631
MaeI CTAG 3 cut(s) 437, 612, 667
MaeIII GTNAC 1 cut(s) 650
MalI GATC 2 cut(s) 180, 396
MbiI CCGCTC 1 cut(s) 446
MboI GATC 2 cut(s) 178, 394
MboII GAAGA 1 cut(s) 401
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 507, 587
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 7 cut(s) 103, 183, 276, 310, 331, 475, 566
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 1 cut(s) 546
MspI CCGG 2 cut(s) 105, 255
MspR9I CCNGG 2 cut(s) 67, 255
Mva1269I GAATGC 2 cut(s) 59, 582
MvaI CCWGG 1 cut(s) 67
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 437
NciI CCSGG 1 cut(s) 255
NdeII GATC 2 cut(s) 178, 394
NheI GCTAGC 1 cut(s) 436
NlaIII CATG 1 cut(s) 569
NlaIV GGNNCC 5 cut(s) 6, 165, 166, 252, 276
NmuCI GTSAC 1 cut(s) 650
NruI TCGCGA 1 cut(s) 177
PaqCI CACCTGC 1 cut(s) 238
PctI GAATGC 2 cut(s) 59, 582
PdmI GAANNNNTTC 1 cut(s) 17
PkrI GCNGC 2 cut(s) 442, 445
Ple19I CGATCG 1 cut(s) 181
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PpuMI RGGWCCY 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 65
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 5 cut(s) 6, 165, 166, 252, 276
PspPI GGNCC 3 cut(s) 164, 275, 358
PspPPI RGGWCCY 1 cut(s) 164
PsuI RGATCY 1 cut(s) 394
PvuI CGATCG 1 cut(s) 181
RruI TCGCGA 1 cut(s) 177
SalI GTCGAC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 2 cut(s) 441, 444
Sau3AI GATC 2 cut(s) 178, 394
Sau96I GGNCC 3 cut(s) 164, 275, 358
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 67, 255
SduI GDGCHC 1 cut(s) 255
SetI ASST 9 cut(s) 10, 68, 134, 145, 175, 252, 342, 467, 558
SfaNI GCATC 3 cut(s) 80, 358, 631
SinI GGWCC 1 cut(s) 164
Sse9I AATT 2 cut(s) 507, 587
SsiI CCGC 5 cut(s) 57, 70, 371, 441, 444
SspMI CTAG 3 cut(s) 437, 612, 667
StyD4I CCNGG 2 cut(s) 65, 253
StyI CCWWGG 1 cut(s) 278
TaqI TCGA 4 cut(s) 88, 121, 343, 480
TasI AATT 2 cut(s) 507, 587
TauI GCSGC 2 cut(s) 443, 446
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 2 cut(s) 52, 438
TseFI GTSAC 1 cut(s) 650
Tsp45I GTSAC 1 cut(s) 650
TspRI CASTG 2 cut(s) 52, 438
VpaK11BI GGWCC 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 3 cut(s) 437, 612, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.