Rmu_sc0017009.1_g000004

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017009.1
OG0000214
Physical Location & Seq
Reverse (-)
8158 .. 8871
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017009.1_g000004.1.cds

Sequence Viewer

Length: 657 bp
atgcgcccatttgataccgacattagtggccccttctggatccttgccttttggctacagatttatttccctcacttccgtcgcggtgatattccaaaggaacctccagttgattcccttttggggaactggctttgtcgcaacatgaggtatcaagctccactctaccccgagtgttttatctacttgtacttgctgggagagatgccggacccaaaaatagtcctttctaggcaattccctcctccccttgatgatggctttctgcccagtggacgggatcatagcgaaagagccctcctatcctttcgtcgcgccatctcctacttagatattcatcttgtcaccgaccgcgtaagttacgagcactatgcccctaaccactttgctcgccaatttgggttggcccagttggtaccttggcctttggttgattctgccaattactacaccttttggcggagattagctctgcctggagcgttgtaccccctcaacgatgtcgatgatgattatgctgattggtggaaagagatgtccgtgaactattgggacctgccacatgacgaactcttcatcctgatttttcgtggcatgagtagtcctggtccggaggactgcgagattcttgagcgcttctccaatcctgcagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

218

Amino Acids

25.68

Weight (kDa)

4.95

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 564
Acc65I GGTACC 1 cut(s) 415
AccB1I GGYRCC 1 cut(s) 415
AccII CGCG 3 cut(s) 84, 315, 354
AccIII TCCGGA 1 cut(s) 610
AciI CCGC 3 cut(s) 84, 352, 460
AclWI GGATC 3 cut(s) 34, 47, 288
AfaI GTAC 3 cut(s) 191, 417, 488
AfeI AGCGCT 1 cut(s) 635
AfiI CCNNNNNNNGG 3 cut(s) 123, 276, 459
AjnI CCWGG 2 cut(s) 475, 604
AloI GAACNNNNNNTCC 2 cut(s) 561, 593
AluBI AGCT 2 cut(s) 158, 470
AluI AGCT 2 cut(s) 158, 470
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 3 cut(s) 34, 47, 288
Ama87I CYCGRG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 610
Aor51HI AGCGCT 1 cut(s) 635
AoxI GGCC 3 cut(s) 28, 405, 422
ApeKI GCWGC 1 cut(s) 650
Asp718I GGTACC 1 cut(s) 415
AspLEI GCGC 3 cut(s) 6, 317, 636
AspS9I GGNCC 5 cut(s) 29, 211, 406, 553, 608
AsuHPI GGTGA 2 cut(s) 98, 337
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 3 cut(s) 211, 553, 608
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 369
BccI CCATC 2 cut(s) 251, 326
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciT130I CCWGG 2 cut(s) 477, 606
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 2 cut(s) 56, 648
BfoI RGCGCY 1 cut(s) 637
BfuAI ACCTGC 1 cut(s) 564
BisI GCNGC 1 cut(s) 651
BlsI GCNGC 1 cut(s) 652
Bme1390I CCNGG 2 cut(s) 477, 606
Bme18I GGWCC 3 cut(s) 211, 553, 608
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 5 cut(s) 29, 211, 406, 553, 608
BmiI GGNNCC 6 cut(s) 31, 41, 102, 213, 417, 554
BmrFI CCNGG 2 cut(s) 477, 606
BmrI ACTGGG 2 cut(s) 264, 403
BmsI GCATC 1 cut(s) 195
BmuI ACTGGG 2 cut(s) 264, 403
BplI GAGNNNNNCTC 4 cut(s) 454, 486, 623, 655
BpmI CTGGAG 2 cut(s) 90, 498
BpuEI CTTGAG 1 cut(s) 650
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 419
BsaWI WCCGGW 1 cut(s) 610
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 276, 459
Bse1I ACTGG 4 cut(s) 107, 134, 270, 409
Bse8I GATNNNNATC 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 610
BseBI CCWGG 2 cut(s) 477, 606
BseDI CCNNGG 1 cut(s) 419
BseGI GGATG 1 cut(s) 576
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 3 cut(s) 123, 276, 459
BseNI ACTGG 4 cut(s) 107, 134, 270, 409
BseRI GAGGAG 1 cut(s) 234
BseYI CCCAGC 1 cut(s) 196
Bsh1236I CGCG 3 cut(s) 84, 315, 354
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 3 cut(s) 30, 407, 424
BshNI GGYRCC 1 cut(s) 415
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 2 cut(s) 209, 611
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 3 cut(s) 123, 276, 459
BsmFI GGGAC 1 cut(s) 566
BsnI GGCC 3 cut(s) 30, 407, 424
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 298, 369
Bsp13I TCCGGA 1 cut(s) 610
Bsp143I GATC 2 cut(s) 39, 280
BspACI CCGC 3 cut(s) 84, 352, 460
BspANI GGCC 3 cut(s) 30, 407, 424
BspEI TCCGGA 1 cut(s) 610
BspFNI CGCG 3 cut(s) 84, 315, 354
BspLI GGNNCC 6 cut(s) 31, 41, 102, 213, 417, 554
BspMAI CTGCAG 1 cut(s) 652
BspMI ACCTGC 1 cut(s) 564
BspPI GGATC 3 cut(s) 34, 47, 288
BspT107I GGYRCC 1 cut(s) 415
BsrI ACTGG 4 cut(s) 107, 134, 270, 409
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 2 cut(s) 39, 280
BssT1I CCWWGG 1 cut(s) 419
Bst2UI CCWGG 2 cut(s) 477, 606
Bst6I CTCTTC 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 328
BstF5I GGATG 1 cut(s) 576
BstFNI CGCG 3 cut(s) 84, 315, 354
BstH2I RGCGCY 1 cut(s) 637
BstHHI GCGC 3 cut(s) 6, 317, 636
BstKTI GATC 2 cut(s) 42, 283
BstMBI GATC 2 cut(s) 39, 280
BstMCI CGRYCG 1 cut(s) 352
BstNI CCWGG 2 cut(s) 477, 606
BstSCI CCNGG 2 cut(s) 475, 604
BstSFI CTRYAG 2 cut(s) 56, 648
BstUI CGCG 3 cut(s) 84, 315, 354
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 3 cut(s) 30, 407, 424
BtsCI GGATG 1 cut(s) 576
BtsIMutI CAGTG 1 cut(s) 277
BveI ACCTGC 1 cut(s) 564
Cac8I GCNNGC 1 cut(s) 391
CfoI GCGC 3 cut(s) 6, 317, 636
Cfr13I GGNCC 5 cut(s) 29, 211, 406, 553, 608
Csp6I GTAC 3 cut(s) 190, 416, 487
CviAII CATG 3 cut(s) 145, 563, 595
CviJI RGCY 9 cut(s) 30, 55, 133, 158, 261, 296, 407, 424, 470
CviKI_1 RGCY 9 cut(s) 30, 55, 133, 158, 261, 296, 407, 424, 470
CviQI GTAC 3 cut(s) 190, 416, 487
DdeI CTNAG 1 cut(s) 328
DpnI GATC 2 cut(s) 41, 282
DpnII GATC 2 cut(s) 39, 280
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
EciI GGCGGA 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 298
Eco47I GGWCC 3 cut(s) 211, 553, 608
Eco47III AGCGCT 1 cut(s) 635
Eco88I CYCGRG 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 553
EcoRII CCWGG 2 cut(s) 475, 604
EcoT14I CCWWGG 1 cut(s) 419
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 3 cut(s) 148, 566, 598
FaiI YATR 7 cut(s) 146, 285, 372, 516, 564, 596, 655
FaqI GGGAC 1 cut(s) 566
FatI CATG 3 cut(s) 144, 562, 594
Fnu4HI GCNGC 1 cut(s) 651
FokI GGATG 1 cut(s) 563
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 651
FspBI CTAG 1 cut(s) 231
GlaI GCGC 3 cut(s) 5, 316, 635
GluI GCNGC 1 cut(s) 651
GsaI CCCAGC 1 cut(s) 200
GsuI CTGGAG 2 cut(s) 90, 498
HaeII RGCGCY 1 cut(s) 637
HaeIII GGCC 3 cut(s) 30, 407, 424
HapII CCGG 2 cut(s) 209, 611
HhaI GCGC 3 cut(s) 6, 317, 636
Hin1II CATG 3 cut(s) 148, 566, 598
Hin6I GCGC 3 cut(s) 4, 315, 634
HinP1I GCGC 3 cut(s) 4, 315, 634
HinfI GANTC 3 cut(s) 113, 434, 625
HpaII CCGG 2 cut(s) 209, 611
HphI GGTGA 2 cut(s) 98, 337
Hpy166II GTNNAC 2 cut(s) 275, 544
Hpy188III TCNNGA 4 cut(s) 37, 580, 611, 629
Hpy8I GTNNAC 2 cut(s) 275, 544
Hpy99I CGWCG 2 cut(s) 84, 315
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 650
HpyF3I CTNAG 1 cut(s) 328
Hsp92II CATG 3 cut(s) 148, 566, 598
HspAI GCGC 3 cut(s) 4, 315, 634
Kpn2I TCCGGA 1 cut(s) 610
KpnI GGTACC 1 cut(s) 419
Kzo9I GATC 2 cut(s) 39, 280
LmnI GCTCC 2 cut(s) 163, 479
LweI GCATC 1 cut(s) 195
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 343, 359
MalI GATC 2 cut(s) 41, 282
MboI GATC 2 cut(s) 39, 280
MboII GAAGA 1 cut(s) 565
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 2 cut(s) 298, 369
MluCI AATT 3 cut(s) 236, 395, 442
MnlI CCTC 8 cut(s) 81, 114, 141, 252, 255, 308, 503, 607
MroI TCCGGA 1 cut(s) 610
MspI CCGG 2 cut(s) 209, 611
MspR9I CCNGG 2 cut(s) 477, 606
MvaI CCWGG 2 cut(s) 477, 606
MvnI CGCG 3 cut(s) 84, 315, 354
NdeII GATC 2 cut(s) 39, 280
NlaIII CATG 3 cut(s) 148, 566, 598
NlaIV GGNNCC 6 cut(s) 31, 41, 102, 213, 417, 554
NmuCI GTSAC 1 cut(s) 343
PfeI GAWTC 3 cut(s) 113, 434, 625
PkrI GCNGC 1 cut(s) 652
PpuMI RGGWCCY 1 cut(s) 553
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 2 cut(s) 475, 604
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 2 cut(s) 475, 604
PspN4I GGNNCC 6 cut(s) 31, 41, 102, 213, 417, 554
PspPI GGNCC 5 cut(s) 29, 211, 406, 553, 608
PspPPI RGGWCCY 1 cut(s) 553
PstI CTGCAG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 3 cut(s) 191, 417, 488
RsaNI GTAC 3 cut(s) 190, 416, 487
SatI GCNGC 1 cut(s) 651
Sau3AI GATC 2 cut(s) 39, 280
Sau96I GGNCC 5 cut(s) 29, 211, 406, 553, 608
ScrFI CCNGG 2 cut(s) 477, 606
SduI GDGCHC 2 cut(s) 298, 369
SetI ASST 7 cut(s) 106, 152, 160, 421, 455, 472, 558
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 2 cut(s) 56, 648
SinI GGWCC 3 cut(s) 211, 553, 608
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 3 cut(s) 236, 395, 442
SsiI CCGC 3 cut(s) 84, 352, 460
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 475, 604
StyI CCWWGG 1 cut(s) 419
TaqI TCGA 1 cut(s) 504
TasI AATT 3 cut(s) 236, 395, 442
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 3 cut(s) 113, 434, 625
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 326, 565
TspGWI ACGGA 2 cut(s) 68, 529
TspRI CASTG 1 cut(s) 277
VpaK11BI GGWCC 3 cut(s) 211, 553, 608
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.