Rmu_sc0002985.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002985.1
OG0000214
Physical Location & Seq
Reverse (-)
34177 .. 34656
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002985.1_g000011.1.cds

Sequence Viewer

Length: 480 bp
atgagggtgttggaggtaactcctccttctgctgtggatgaggctaagatggtgcttcacgaacatctgcgtcctcgggtattggagactgacatcctcccgcgagtcttggaagctctaaggtatcttcgccaggaaaaggctttgactctgtggcaatttagtgatatcgattctctgctgaataaacttggtagggcccgccaacgtcaatcggcagtgaacgcccaagcttacaatgctcaagagactttaaatagtgtctctcgagaaatggacatctcccgcagtattttaaatgagcgagccatctgcctgcgggaactacaaatccaaaggtccgacttcaaacttcggatcgaggacctccatgccggtttagcctttgttgagaatgcgattgctacagaagaagcccaactcgatgaacatttggctgcttatgaagaaatgggccgcaacctggcccgtgtcagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.33

Weight (kDa)

5.85

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 103
AciI CCGC 5 cut(s) 101, 202, 286, 319, 457
AclWI GGATC 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 139, 463
AgsI TTSAA 1 cut(s) 349
AjnI CCWGG 2 cut(s) 132, 462
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 2 cut(s) 116, 233
AluI AGCT 2 cut(s) 116, 233
Alw26I GTCTC 3 cut(s) 80, 242, 268
AlwI GGATC 1 cut(s) 365
Ama87I CYCGRG 2 cut(s) 75, 267
AoxI GGCC 3 cut(s) 198, 454, 465
ApaI GGGCCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 437
AspS9I GGNCC 6 cut(s) 198, 199, 339, 364, 454, 466
AvaI CYCGRG 2 cut(s) 75, 267
AvaII GGWCC 2 cut(s) 339, 364
BaeGI GKGCMC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 424
BccI CCATC 2 cut(s) 43, 317
BcgI CGANNNNNNTGC 2 cut(s) 294, 328
BciT130I CCWGG 2 cut(s) 134, 464
BcoDI GTCTC 3 cut(s) 80, 242, 268
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 2 cut(s) 438, 457
BlsI GCNGC 2 cut(s) 439, 458
Bme1390I CCNGG 2 cut(s) 134, 464
Bme18I GGWCC 2 cut(s) 339, 364
BmeT110I CYCGRG 2 cut(s) 75, 267
BmgT120I GGNCC 6 cut(s) 198, 199, 339, 364, 454, 466
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 134, 464
BpuEI CTTGAG 1 cut(s) 228
Bsa29I ATCGAT 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 463
Bse118I RCCGGY 1 cut(s) 374
BseBI CCWGG 2 cut(s) 134, 464
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 2 cut(s) 43, 93
BseLI CCNNNNNNNGG 2 cut(s) 139, 463
BseRI GAGGAG 1 cut(s) 12
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 3 cut(s) 200, 456, 467
BshVI ATCGAT 1 cut(s) 171
BsiHKCI CYCGRG 2 cut(s) 75, 267
BsiSI CCGG 1 cut(s) 375
BslI CCNNNNNNNGG 2 cut(s) 139, 463
BsmAI GTCTC 3 cut(s) 80, 242, 268
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 3 cut(s) 200, 456, 467
BsoBI CYCGRG 2 cut(s) 75, 267
Bsp120I GGGCCC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 357
BspACI CCGC 5 cut(s) 101, 202, 286, 319, 457
BspANI GGCC 3 cut(s) 200, 456, 467
BspDI ATCGAT 1 cut(s) 171
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 200
BspPI GGATC 1 cut(s) 365
BsrFI RCCGGY 1 cut(s) 374
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 357
Bst2UI CCWGG 2 cut(s) 134, 464
BstC8I GCNNGC 3 cut(s) 202, 306, 317
BstDEI CTNAG 2 cut(s) 45, 119
BstF5I GGATG 2 cut(s) 43, 93
BstFNI CGCG 1 cut(s) 103
BstKTI GATC 1 cut(s) 360
BstMAI GTCTC 3 cut(s) 80, 242, 268
BstMBI GATC 1 cut(s) 357
BstMWI GCNNNNNNNGC 3 cut(s) 224, 239, 380
BstNI CCWGG 2 cut(s) 134, 464
BstSCI CCNGG 2 cut(s) 132, 462
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 202
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 424
Bsu15I ATCGAT 1 cut(s) 171
BsuRI GGCC 3 cut(s) 200, 456, 467
BsuTUI ATCGAT 1 cut(s) 171
BtsCI GGATG 2 cut(s) 43, 93
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 3 cut(s) 202, 306, 317
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 6 cut(s) 198, 199, 339, 364, 454, 466
ClaI ATCGAT 1 cut(s) 171
CseI GACGC 1 cut(s) 59
CviAII CATG 1 cut(s) 371
DdeI CTNAG 2 cut(s) 45, 119
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
DraI TTTAAA 2 cut(s) 255, 297
Eco24I GRGCYC 1 cut(s) 202
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 2 cut(s) 339, 364
Eco88I CYCGRG 2 cut(s) 75, 267
EcoO109I RGGNCCY 2 cut(s) 198, 364
EcoRII CCWGG 2 cut(s) 132, 462
EcoRV GATATC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 202
FaeI CATG 1 cut(s) 374
FaiI YATR 2 cut(s) 372, 444
FatI CATG 1 cut(s) 370
FauI CCCGC 4 cut(s) 108, 209, 293, 312
Fnu4HI GCNGC 2 cut(s) 438, 457
FokI GGATG 2 cut(s) 50, 80
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 2 cut(s) 438, 457
GluI GCNGC 2 cut(s) 438, 457
HaeIII GGCC 3 cut(s) 200, 456, 467
HapII CCGG 1 cut(s) 375
HgaI GACGC 1 cut(s) 59
Hin1II CATG 1 cut(s) 374
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 3 cut(s) 105, 148, 173
HpaII CCGG 1 cut(s) 375
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 343, 357, 476
Hpy188III TCNNGA 4 cut(s) 59, 245, 267, 269
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 36
HpyCH4IV ACGT 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 239, 380
HpyF3I CTNAG 2 cut(s) 45, 119
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 1 cut(s) 374
Kzo9I GATC 1 cut(s) 357
LpnPI CCDG 6 cut(s) 119, 146, 329, 388, 449, 476
Lsp1109I GCAGC 1 cut(s) 424
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 3 cut(s) 119, 422, 458
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 1 cut(s) 158
MlyI GAGTC 2 cut(s) 114, 142
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 7 cut(s) 7, 33, 34, 84, 107, 355, 377
MseI TTAA 2 cut(s) 254, 296
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 2 cut(s) 134, 464
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 2 cut(s) 134, 464
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 224, 239, 380
NdeII GATC 1 cut(s) 357
NlaIII CATG 1 cut(s) 374
NlaIV GGNNCC 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 267
PctI GAATGC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 439, 458
PleI GAGTC 2 cut(s) 113, 142
PpsI GAGTC 2 cut(s) 113, 142
PpuMI RGGWCCY 1 cut(s) 364
Psp5II RGGWCCY 1 cut(s) 364
Psp6I CCWGG 2 cut(s) 132, 462
PspGI CCWGG 2 cut(s) 132, 462
PspN4I GGNNCC 1 cut(s) 200
PspOMI GGGCCC 1 cut(s) 198
PspPI GGNCC 6 cut(s) 198, 199, 339, 364, 454, 466
PspPPI RGGWCCY 1 cut(s) 364
SaqAI TTAA 2 cut(s) 254, 296
SatI GCNGC 2 cut(s) 438, 457
Sau3AI GATC 1 cut(s) 357
Sau96I GGNCC 6 cut(s) 198, 199, 339, 364, 454, 466
SchI GAGTC 2 cut(s) 114, 142
ScrFI CCNGG 2 cut(s) 134, 464
SduI GDGCHC 1 cut(s) 202
SetI ASST 8 cut(s) 18, 118, 125, 211, 235, 341, 369, 465
SfcI CTRYAG 1 cut(s) 405
Sfr274I CTCGAG 1 cut(s) 267
SinI GGWCC 2 cut(s) 339, 364
SlaI CTCGAG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 243, 267
SmoI CTYRAG 2 cut(s) 243, 267
Sse9I AATT 1 cut(s) 158
SsiI CCGC 5 cut(s) 101, 202, 286, 319, 457
StyD4I CCNGG 2 cut(s) 132, 462
TaiI ACGT 1 cut(s) 211
TaqI TCGA 4 cut(s) 171, 268, 360, 423
TasI AATT 1 cut(s) 158
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 254, 296
Tru9I TTAA 2 cut(s) 254, 296
TscAI CASTG 1 cut(s) 225
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 2 cut(s) 441, 459
TspRI CASTG 1 cut(s) 225
VpaK11BI GGWCC 2 cut(s) 339, 364
XhoI CTCGAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.