Rmu_sc0039686.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039686.1
OG0000214
Physical Location & Seq
Forward (+)
1 .. 465
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039686.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
ttggaagctctaaggtatcttcgccaggagaaggtattgaccctgcagcaatttagtgctattgatgatctgttgaatgaagttgatatggcccaccgacgtcaatcggccgcgaacacccaggctcgggatgctcaagaggctttgaatagtgtctctcaagaaatgaacatctcccgcgatattttaaatgaacgctccatccgcctgcgggaactacaaatccaaaggtctgacttcagacttcaaatcgaggacctccaagcccatttagcctttgttgagaatgcgattgttgcagaagaagctcaactcgatgagcctttaactgcttatgaagaaatgggccgcaacctggcccgtatcagagatcgagccactcaggccgaagctggtgctattgaggcgaaacgccacgtggaggaactttgtttgaaattgagctttgcatgccaatctttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.66

Weight (kDa)

4.96

Isoelectric Point (pI)

65.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 103
AccII CGCG 2 cut(s) 113, 180
AciI CCGC 5 cut(s) 111, 178, 205, 211, 349
AcoI YGGCCR 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 223
AcvI CACGTG 1 cut(s) 418
AcyI GRCGYC 1 cut(s) 100
AfiI CCNNNNNNNGG 6 cut(s) 31, 126, 127, 211, 355, 421
AgsI TTSAA 4 cut(s) 76, 148, 248, 436
AjnI CCWGG 3 cut(s) 24, 120, 354
AloI GAACNNNNNNTCC 4 cut(s) 186, 207, 218, 239
AluBI AGCT 4 cut(s) 8, 308, 392, 444
AluI AGCT 4 cut(s) 8, 308, 392, 444
Alw26I GTCTC 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 5 cut(s) 90, 108, 346, 357, 384
ApeKI GCWGC 1 cut(s) 46
AspS9I GGNCC 4 cut(s) 91, 256, 346, 358
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 1 cut(s) 256
BbrPI CACGTG 1 cut(s) 418
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 209
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 3 cut(s) 26, 122, 356
BcoDI GTCTC 1 cut(s) 160
BfmI CTRYAG 1 cut(s) 44
BglI GCCNNNNNGGC 1 cut(s) 383
BisI GCNGC 3 cut(s) 47, 111, 349
BlsI GCNGC 3 cut(s) 48, 112, 350
Bme1390I CCNGG 3 cut(s) 26, 122, 356
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 4 cut(s) 91, 256, 346, 358
BmrFI CCNGG 3 cut(s) 26, 122, 356
BmsI GCATC 1 cut(s) 121
BpuEI CTTGAG 2 cut(s) 120, 144
BsaAI YACGTR 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 126, 127, 211, 355, 421
BseBI CCWGG 3 cut(s) 26, 122, 356
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 136, 201
BseLI CCNNNNNNNGG 6 cut(s) 31, 126, 127, 211, 355, 421
BseMII CTCAG 1 cut(s) 395
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 2 cut(s) 113, 180
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 5 cut(s) 92, 110, 348, 359, 386
BsiEI CGRYCG 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 126
BslI CCNNNNNNNGG 6 cut(s) 31, 126, 127, 211, 355, 421
BsmAI GTCTC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 5 cut(s) 92, 110, 348, 359, 386
BsoBI CYCGRG 1 cut(s) 126
Bsp143I GATC 2 cut(s) 67, 370
BspACI CCGC 5 cut(s) 111, 178, 205, 211, 349
BspANI GGCC 5 cut(s) 92, 110, 348, 359, 386
BspCNI CTCAG 1 cut(s) 394
BspFNI CGCG 2 cut(s) 113, 180
BspMAI CTGCAG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 67, 370
BssNI GRCGYC 1 cut(s) 100
Bst2UI CCWGG 3 cut(s) 26, 122, 356
BstACI GRCGYC 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 209, 451
BstDEI CTNAG 2 cut(s) 11, 381
BstF5I GGATG 2 cut(s) 136, 201
BstFNI CGCG 2 cut(s) 113, 180
BstKTI GATC 2 cut(s) 70, 373
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 2 cut(s) 67, 370
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 9 cut(s) 131, 140, 204, 272, 296, 305, 383, 404, 450
BstNI CCWGG 3 cut(s) 26, 122, 356
BstNSI RCATGY 1 cut(s) 453
BstSCI CCNGG 3 cut(s) 24, 120, 354
BstSFI CTRYAG 1 cut(s) 44
BstUI CGCG 2 cut(s) 113, 180
BstV1I GCAGC 1 cut(s) 58
BstZI CGGCCG 1 cut(s) 108
BsuRI GGCC 5 cut(s) 92, 110, 348, 359, 386
BtsCI GGATG 2 cut(s) 136, 201
Cac8I GCNNGC 2 cut(s) 209, 451
Cfr13I GGNCC 4 cut(s) 91, 256, 346, 358
CviAII CATG 1 cut(s) 450
DdeI CTNAG 2 cut(s) 11, 381
DpnI GATC 2 cut(s) 69, 372
DpnII GATC 2 cut(s) 67, 370
DraI TTTAAA 1 cut(s) 189
EaeI YGGCCR 1 cut(s) 108
EagI CGGCCG 1 cut(s) 108
EciI GGCGGA 1 cut(s) 194
EclXI CGGCCG 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 256
Eco52I CGGCCG 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 223
Eco72I CACGTG 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 256
EcoRII CCWGG 3 cut(s) 24, 120, 354
FaeI CATG 1 cut(s) 453
FaiI YATR 3 cut(s) 89, 336, 451
FatI CATG 1 cut(s) 449
FauI CCCGC 2 cut(s) 185, 204
Fnu4HI GCNGC 3 cut(s) 47, 111, 349
FokI GGATG 2 cut(s) 143, 188
Fsp4HI GCNGC 3 cut(s) 47, 111, 349
GluI GCNGC 3 cut(s) 47, 111, 349
HaeIII GGCC 5 cut(s) 92, 110, 348, 359, 386
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 1 cut(s) 453
Hpy188I TCNGA 3 cut(s) 235, 242, 368
Hpy188III TCNNGA 3 cut(s) 128, 137, 161
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 25
HpyCH4IV ACGT 2 cut(s) 100, 417
HpyCH4V TGCA 3 cut(s) 46, 299, 449
HpyF10VI GCNNNNNNNGC 9 cut(s) 131, 140, 204, 272, 296, 305, 383, 404, 450
HpyF3I CTNAG 2 cut(s) 11, 381
HpySE526I ACGT 2 cut(s) 100, 417
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 1 cut(s) 453
Kzo9I GATC 2 cut(s) 67, 370
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 121
MaeII ACGT 2 cut(s) 100, 417
MalI GATC 2 cut(s) 69, 372
MboI GATC 2 cut(s) 67, 370
MboII GAAGA 3 cut(s) 11, 314, 350
MluCI AATT 2 cut(s) 50, 437
MnlI CCTC 5 cut(s) 133, 247, 269, 397, 415
MseI TTAA 2 cut(s) 188, 326
MspR9I CCNGG 3 cut(s) 26, 122, 356
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 3 cut(s) 26, 122, 356
MvnI CGCG 2 cut(s) 113, 180
MwoI GCNNNNNNNGC 9 cut(s) 131, 140, 204, 272, 296, 305, 383, 404, 450
NdeII GATC 2 cut(s) 67, 370
NlaIII CATG 1 cut(s) 453
NspI RCATGY 1 cut(s) 453
PaeI GCATGC 1 cut(s) 453
PctI GAATGC 1 cut(s) 292
PkrI GCNGC 3 cut(s) 48, 112, 350
PmaCI CACGTG 1 cut(s) 418
PmlI CACGTG 1 cut(s) 418
Ppu21I YACGTR 1 cut(s) 418
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 3 cut(s) 24, 120, 354
PspCI CACGTG 1 cut(s) 418
PspGI CCWGG 3 cut(s) 24, 120, 354
PspPI GGNCC 4 cut(s) 91, 256, 346, 358
PspPPI RGGWCCY 1 cut(s) 256
PstI CTGCAG 1 cut(s) 48
SaqAI TTAA 2 cut(s) 188, 326
SatI GCNGC 3 cut(s) 47, 111, 349
Sau3AI GATC 2 cut(s) 67, 370
Sau96I GGNCC 4 cut(s) 91, 256, 346, 358
ScrFI CCNGG 3 cut(s) 26, 122, 356
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 44
SinI GGWCC 1 cut(s) 256
SmlI CTYRAG 2 cut(s) 135, 159
SmoI CTYRAG 2 cut(s) 135, 159
SphI GCATGC 1 cut(s) 453
Sse9I AATT 2 cut(s) 50, 437
SsiI CCGC 5 cut(s) 111, 178, 205, 211, 349
StyD4I CCNGG 3 cut(s) 24, 120, 354
TaiI ACGT 2 cut(s) 103, 420
TaqI TCGA 3 cut(s) 252, 315, 373
TasI AATT 2 cut(s) 50, 437
TauI GCSGC 2 cut(s) 113, 351
Tru1I TTAA 2 cut(s) 188, 326
Tru9I TTAA 2 cut(s) 188, 326
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 4 cut(s) 93, 182, 207, 351
VpaK11BI GGWCC 1 cut(s) 256
XceI RCATGY 1 cut(s) 453
ZraI GACGTC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.