Rroxscaffold_4G00329960

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000214
Physical Location & Seq
Forward (+)
63311970 .. 63312839
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00329960.1

Sequence Viewer

Length: 870 bp
ATGGGCTTTGGTGGCGGTGATAGTCAAGCGAGTCCGGGTCCCACACCTCGTGATCGTTTGCCGGATGATGCTATGGCCTATTATGGGCTTCCCATCCGCCGTCCCATAGCAGCTCTTCGGCAGGTGCCCGGTGATTTTAGCAGTTGGGAACCAAGGAGGAAAGTGGGCTTCGGCCTACCGTCGCTCCCGAGTAAAAGGTTTGGTATCGGGAGGTCCGAGCGAGAGATTTGGCTCGATGGGATGCGTGGGTATCACCCAAACCATCGATCTATGCTTCGTCTTCCCTATAATACTAGCCTTGCACCGCTAGTGGCCGCTCTTTGCTTCGGAACACCTCCAAGCAATACATTCGATTTCTCGTTTGGGCGTATGAGCATAACTCTACCGGATGTTCTTACCATCACGGGGTTGCCCATTGACTTTGACCCTTATGTGCATGGTCGGTTTGATGGCATTCAATTTTCTTTGAGAATGGATATGGCTGGTCGAGGGCATCACAAGCAAATCCTACCCATTCGGCGCGATCGTTACCGCACCCGCCGTGACCATACGGGAGGTATCGCATTCCCGGAATTCGGCTTTGCAAATTTATCTTTTGCACTTCTTCCAACAAACCCATCGGGCCTTGGAATTCTCTCGCCACTTGCTCTCTACAATGGTACTTGCGTTGGCCTTGGGCAACCTATATTGGGTGCGTTATATCGTTCCCTTTATAGGGCCATAATGCGCCCCTTCGATACCGACATTAGTGGCCCTTTCGGATCCTTGCCTTTTGGCTGCAGATTTATTTCCCTTGCTTCCATCGCGATGATATTCCAAAGGAACCTACGGTCGATTCCCTTTTGGGAAACTGGCTTTGCCGCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

289

Amino Acids

32.02

Weight (kDa)

10.12

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 317
AccII CGCG 2 cut(s) 522, 806
AciI CCGC 7 cut(s) 15, 97, 305, 315, 532, 538, 861
AclWI GGATC 2 cut(s) 756, 769
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 3 cut(s) 572, 586, 630
AdeI CACNNNGTG 1 cut(s) 50
AfaI GTAC 1 cut(s) 661
AfiI CCNNNNNNNGG 6 cut(s) 84, 405, 575, 689, 714, 715
AgsI TTSAA 1 cut(s) 458
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
AlwI GGATC 2 cut(s) 756, 769
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 7 cut(s) 75, 172, 312, 622, 670, 717, 751
ApeKI GCWGC 2 cut(s) 110, 777
ApoI RAATTY 3 cut(s) 572, 586, 630
AspLEI GCGC 2 cut(s) 522, 729
AspS9I GGNCC 5 cut(s) 38, 213, 622, 717, 752
AsuC2I CCSGG 3 cut(s) 36, 129, 569
AsuHPI GGTGA 3 cut(s) 29, 143, 245
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 2 cut(s) 38, 213
BaeGI GKGCMC 1 cut(s) 129
BaeI ACNNNNGTAYC 2 cut(s) 651, 684
BamHI GGATCC 1 cut(s) 761
BanI GGYRCC 1 cut(s) 124
BauI CACGAG 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 122, 764
BccI CCATC 7 cut(s) 101, 230, 270, 407, 443, 625, 809
BceAI ACGGC 2 cut(s) 84, 525
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BcnI CCSGG 3 cut(s) 36, 129, 569
BfaI CTAG 2 cut(s) 294, 308
BfmI CTRYAG 1 cut(s) 778
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 4 cut(s) 111, 315, 778, 861
BlsI GCNGC 4 cut(s) 112, 316, 779, 862
Bme1390I CCNGG 3 cut(s) 36, 129, 569
Bme18I GGWCC 2 cut(s) 38, 213
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 5 cut(s) 38, 213, 622, 717, 752
BmiI GGNNCC 6 cut(s) 39, 40, 126, 150, 763, 824
BmrFI CCNGG 3 cut(s) 36, 129, 569
BmsI GCATC 3 cut(s) 58, 231, 502
BpiI GAAGAC 1 cut(s) 272
BplI GAGNNNNNCTC 2 cut(s) 364, 396
BpuMI CCSGG 3 cut(s) 36, 129, 569
Bsa29I ATCGAT 1 cut(s) 265
BsaJI CCNNGG 3 cut(s) 152, 625, 673
BsaWI WCCGGW 1 cut(s) 385
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 6 cut(s) 84, 405, 575, 689, 714, 715
Bse1I ACTGG 1 cut(s) 856
Bse3DI GCAATG 1 cut(s) 870
BseCI ATCGAT 1 cut(s) 265
BseDI CCNNGG 3 cut(s) 152, 625, 673
BseGI GGATG 4 cut(s) 70, 93, 246, 394
BseLI CCNNNNNNNGG 6 cut(s) 84, 405, 575, 689, 714, 715
BseMI GCAATG 1 cut(s) 870
BseNI ACTGG 1 cut(s) 856
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 2 cut(s) 122, 764
Bsh1236I CGCG 2 cut(s) 522, 806
Bsh1285I CGRYCG 2 cut(s) 526, 833
BshFI GGCC 7 cut(s) 77, 174, 314, 624, 672, 719, 753
BshNI GGYRCC 1 cut(s) 124
BshVI ATCGAT 1 cut(s) 265
BsiEI CGRYCG 2 cut(s) 526, 833
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 5 cut(s) 35, 62, 129, 386, 569
BslFI GGGAC 2 cut(s) 24, 87
BslI CCNNNNNNNGG 6 cut(s) 84, 405, 575, 689, 714, 715
BsmFI GGGAC 2 cut(s) 24, 87
BsmI GAATGC 2 cut(s) 453, 563
BsnI GGCC 7 cut(s) 77, 174, 314, 624, 672, 719, 753
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 4 cut(s) 52, 266, 523, 761
Bsp68I TCGCGA 1 cut(s) 806
BspACI CCGC 7 cut(s) 15, 97, 305, 315, 532, 538, 861
BspANI GGCC 7 cut(s) 77, 174, 314, 624, 672, 719, 753
BspDI ATCGAT 1 cut(s) 265
BspFNI CGCG 2 cut(s) 522, 806
BspLI GGNNCC 6 cut(s) 39, 40, 126, 150, 763, 824
BspMAI CTGCAG 1 cut(s) 782
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 2 cut(s) 756, 769
BspQI GCTCTTC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 124
BsrBI CCGCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 870
BsrI ACTGG 1 cut(s) 856
BssECI CCNNGG 3 cut(s) 152, 625, 673
BssMI GATC 4 cut(s) 52, 266, 523, 761
BssSI CACGAG 1 cut(s) 48
BssT1I CCWWGG 3 cut(s) 152, 625, 673
Bst2BI CACGAG 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 180, 831
Bst6I CTCTTC 1 cut(s) 120
BstF5I GGATG 4 cut(s) 70, 93, 246, 394
BstFNI CGCG 2 cut(s) 522, 806
BstHHI GCGC 2 cut(s) 522, 729
BstKTI GATC 4 cut(s) 55, 269, 526, 764
BstMBI GATC 4 cut(s) 52, 266, 523, 761
BstMCI CGRYCG 2 cut(s) 526, 833
BstMWI GCNNNNNNNGC 3 cut(s) 12, 499, 803
BstSCI CCNGG 3 cut(s) 34, 127, 567
BstSFI CTRYAG 1 cut(s) 778
BstSLI GKGCMC 1 cut(s) 129
BstUI CGCG 2 cut(s) 522, 806
BstV1I GCAGC 2 cut(s) 122, 764
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 761
BstYI RGATCY 1 cut(s) 761
Bsu15I ATCGAT 1 cut(s) 265
BsuRI GGCC 7 cut(s) 77, 174, 314, 624, 672, 719, 753
BsuTUI ATCGAT 1 cut(s) 265
BtgZI GCGATG 2 cut(s) 787, 821
BtsCI GGATG 4 cut(s) 70, 93, 246, 394
BtuMI TCGCGA 1 cut(s) 806
BveI ACCTGC 1 cut(s) 112
CfoI GCGC 2 cut(s) 522, 729
Cfr13I GGNCC 5 cut(s) 38, 213, 622, 717, 752
ClaI ATCGAT 1 cut(s) 265
Csp6I GTAC 1 cut(s) 660
CviAII CATG 1 cut(s) 437
CviQI GTAC 1 cut(s) 660
DpnI GATC 4 cut(s) 54, 268, 525, 763
DpnII GATC 4 cut(s) 52, 266, 523, 761
DraIII CACNNNGTG 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 3 cut(s) 152, 625, 673
Eco47I GGWCC 2 cut(s) 38, 213
Eco88I CYCGRG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 2 cut(s) 572, 630
EcoT14I CCWWGG 3 cut(s) 152, 625, 673
ErhI CCWWGG 3 cut(s) 152, 625, 673
FaeI CATG 1 cut(s) 440
FaqI GGGAC 2 cut(s) 24, 87
FatI CATG 1 cut(s) 436
FauI CCCGC 1 cut(s) 545
Fnu4HI GCNGC 4 cut(s) 111, 315, 778, 861
FokI GGATG 4 cut(s) 77, 80, 253, 401
Fsp4HI GCNGC 4 cut(s) 111, 315, 778, 861
FspBI CTAG 2 cut(s) 294, 308
GlaI GCGC 2 cut(s) 521, 728
GluI GCNGC 4 cut(s) 111, 315, 778, 861
HaeIII GGCC 7 cut(s) 77, 174, 314, 624, 672, 719, 753
HapII CCGG 5 cut(s) 35, 62, 129, 386, 569
HhaI GCGC 2 cut(s) 522, 729
Hin1II CATG 1 cut(s) 440
Hin6I GCGC 2 cut(s) 520, 727
HinP1I GCGC 2 cut(s) 520, 727
HinfI GANTC 2 cut(s) 31, 835
HpaII CCGG 5 cut(s) 35, 62, 129, 386, 569
HphI GGTGA 3 cut(s) 29, 143, 245
Hpy188I TCNGA 3 cut(s) 217, 329, 761
Hpy188III TCNNGA 4 cut(s) 50, 187, 208, 805
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 742
HpyCH4III ACNGT 2 cut(s) 180, 831
HpyCH4V TGCA 5 cut(s) 302, 436, 584, 599, 780
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 499, 803
Hsp92II CATG 1 cut(s) 440
HspAI GCGC 2 cut(s) 520, 727
KflI GGGWCCC 1 cut(s) 38
Kzo9I GATC 4 cut(s) 52, 266, 523, 761
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 8 cut(s) 48, 75, 107, 142, 399, 468, 582, 837
Lsp1109I GCAGC 2 cut(s) 122, 764
LweI GCATC 3 cut(s) 58, 231, 502
MaeI CTAG 2 cut(s) 294, 308
MaeIII GTNAC 2 cut(s) 527, 542
MalI GATC 4 cut(s) 54, 268, 525, 763
MbiI CCGCTC 1 cut(s) 317
MboI GATC 4 cut(s) 52, 266, 523, 761
MboII GAAGA 3 cut(s) 107, 272, 596
MflI RGATCY 1 cut(s) 761
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 4 cut(s) 458, 572, 586, 630
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 632
MnlI CCTC 6 cut(s) 57, 150, 204, 345, 482, 548
MslI CAYNNNNRTG 1 cut(s) 806
MspI CCGG 5 cut(s) 35, 62, 129, 386, 569
MspR9I CCNGG 3 cut(s) 36, 129, 569
Mva1269I GAATGC 2 cut(s) 453, 563
MvnI CGCG 2 cut(s) 522, 806
MwoI GCNNNNNNNGC 3 cut(s) 12, 499, 803
NciI CCSGG 3 cut(s) 36, 129, 569
NdeII GATC 4 cut(s) 52, 266, 523, 761
NlaIII CATG 1 cut(s) 440
NlaIV GGNNCC 6 cut(s) 39, 40, 126, 150, 763, 824
NmuCI GTSAC 1 cut(s) 542
NruI TCGCGA 1 cut(s) 806
PaqCI CACCTGC 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 523
PctI GAATGC 2 cut(s) 453, 563
PfeI GAWTC 1 cut(s) 835
PfoI TCCNGGA 1 cut(s) 567
PkrI GCNGC 4 cut(s) 112, 316, 779, 862
Ple19I CGATCG 1 cut(s) 526
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
PspN4I GGNNCC 6 cut(s) 39, 40, 126, 150, 763, 824
PspPI GGNCC 5 cut(s) 38, 213, 622, 717, 752
PspPPI RGGWCCY 1 cut(s) 38
PstI CTGCAG 1 cut(s) 782
PsuI RGATCY 1 cut(s) 761
PvuI CGATCG 1 cut(s) 526
RruI TCGCGA 1 cut(s) 806
RsaI GTAC 1 cut(s) 661
RsaNI GTAC 1 cut(s) 660
RseI CAYNNNNRTG 1 cut(s) 806
SapI GCTCTTC 1 cut(s) 120
SatI GCNGC 4 cut(s) 111, 315, 778, 861
Sau3AI GATC 4 cut(s) 52, 266, 523, 761
Sau96I GGNCC 5 cut(s) 38, 213, 622, 717, 752
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 3 cut(s) 36, 129, 569
SduI GDGCHC 1 cut(s) 129
SetI ASST 9 cut(s) 49, 115, 126, 200, 215, 337, 559, 685, 828
SfaNI GCATC 3 cut(s) 58, 231, 502
SfcI CTRYAG 1 cut(s) 778
SinI GGWCC 2 cut(s) 38, 213
SmiMI CAYNNNNRTG 1 cut(s) 806
Sse9I AATT 4 cut(s) 458, 572, 586, 630
SsiI CCGC 7 cut(s) 15, 97, 305, 315, 532, 538, 861
SspMI CTAG 2 cut(s) 294, 308
StyD4I CCNGG 3 cut(s) 34, 127, 567
StyI CCWWGG 3 cut(s) 152, 625, 673
TaaI ACNGT 2 cut(s) 180, 831
TaqI TCGA 6 cut(s) 234, 265, 351, 487, 735, 833
TasI AATT 4 cut(s) 458, 572, 586, 630
TauI GCSGC 2 cut(s) 317, 863
TfiI GAWTC 1 cut(s) 835
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 2 cut(s) 110, 777
Tsp45I GTSAC 1 cut(s) 542
VpaK11BI GGWCC 2 cut(s) 38, 213
XapI RAATTY 3 cut(s) 572, 586, 630
XspI CTAG 2 cut(s) 294, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.