Rroxscaffold_5G00339350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000214
Physical Location & Seq
Forward (+)
7735824 .. 7737339
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339350.1

Sequence Viewer

Length: 540 bp
ATGATTTTGCCAACTACAACACCTCTTGGCGAAGACTCACCCCGCCCGGGTCCGCCCCTTCCGCAGCCCATTTATTCGGTGGAAATTCCCCCTTGGGTGCGGGCGTTGTATCCCCTTAATGAAGCCGCCGATGATTATGCCGCCTTGGTGGAAACAATCGCTGCCCGCGCTCGTAAATGCGATCGTACCGAATATGTCGAGGAGAGTTTTGACGACGATGAGCCTCCGGCCACGCGATTGTCGATTCATACCGAGGAGGTGGTCATTGACGCCGAAGATCTCGCCGGTGGGGTGAACAACCCGTACTTGAATGAAGTGATTAGTGATGTTGGGCCCTTGATCCCGGAAACGGCCGTGGCGAACAATGGCACCGGTGGTTCTCGCTCCCGAAACCGCTTGCCCCAATTATCTAATGGCGAAACTCGCGCCGGACCTTCGAGCCTCCGGCGGTGGTCCCGCCAAACCAAGTTCAAGAGGCCGTTGCCGGAGCCGTGGGTGAAGATGAAGGGAACGAGGAACCCATCGGCCCTCTTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.69

Weight (kDa)

5.03

Isoelectric Point (pI)

63.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 368
AccII CGCG 3 cut(s) 168, 235, 426
AclWI GGATC 1 cut(s) 334
AcoI YGGCCR 2 cut(s) 228, 351
AcsI RAATTY 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 187, 305
AfiI CCNNNNNNNGG 2 cut(s) 47, 349
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 2 cut(s) 310, 472
AlwI GGATC 1 cut(s) 334
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 5 cut(s) 228, 332, 351, 476, 525
ApaI GGGCCC 1 cut(s) 336
ApeKI GCWGC 2 cut(s) 64, 161
ApoI RAATTY 1 cut(s) 84
AsiGI ACCGGT 1 cut(s) 371
AspLEI GCGC 2 cut(s) 170, 428
AspS9I GGNCC 6 cut(s) 50, 332, 333, 431, 453, 526
AsuC2I CCSGG 3 cut(s) 47, 48, 344
AsuHPI GGTGA 3 cut(s) 30, 304, 508
AvaI CYCGRG 1 cut(s) 46
AvaII GGWCC 3 cut(s) 50, 431, 453
BaeGI GKGCMC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 76, 148
BccI CCATC 1 cut(s) 529
BceAI ACGGC 4 cut(s) 338, 366, 463, 475
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciVI GTATCC 1 cut(s) 120
BcnI CCSGG 3 cut(s) 47, 48, 344
BfuI GTATCC 1 cut(s) 120
BglII AGATCT 1 cut(s) 277
BisI GCNGC 4 cut(s) 65, 126, 141, 162
BlsI GCNGC 4 cut(s) 66, 127, 142, 163
Bme1390I CCNGG 3 cut(s) 47, 48, 344
Bme18I GGWCC 3 cut(s) 50, 431, 453
BmeT110I CYCGRG 1 cut(s) 46
BmgT120I GGNCC 6 cut(s) 50, 332, 333, 431, 453, 526
BmiI GGNNCC 6 cut(s) 51, 334, 370, 455, 489, 518
BmrFI CCNGG 3 cut(s) 47, 48, 344
BpiI GAAGAC 1 cut(s) 39
BpuMI CCSGG 3 cut(s) 47, 48, 344
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 6 cut(s) 46, 92, 144, 252, 354, 491
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 349
Bse118I RCCGGY 2 cut(s) 284, 371
BseDI CCNNGG 6 cut(s) 46, 92, 144, 252, 354, 491
BseLI CCNNNNNNNGG 2 cut(s) 47, 349
BseRI GAGGAG 2 cut(s) 215, 269
BseSI GKGCMC 1 cut(s) 336
BseX3I CGGCCG 1 cut(s) 351
BseXI GCAGC 2 cut(s) 76, 148
Bsh1236I CGCG 3 cut(s) 168, 235, 426
Bsh1285I CGRYCG 2 cut(s) 184, 354
BshFI GGCC 5 cut(s) 230, 334, 353, 478, 527
BshNI GGYRCC 1 cut(s) 368
BshTI ACCGGT 1 cut(s) 371
BsiEI CGRYCG 2 cut(s) 184, 354
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 8 cut(s) 47, 227, 285, 344, 372, 429, 445, 485
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 2 cut(s) 47, 349
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 5 cut(s) 230, 334, 353, 478, 527
BsoBI CYCGRG 1 cut(s) 46
Bsp120I GGGCCC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 3 cut(s) 181, 277, 339
BspANI GGCC 5 cut(s) 230, 334, 353, 478, 527
BspFNI CGCG 3 cut(s) 168, 235, 426
BspLI GGNNCC 6 cut(s) 51, 334, 370, 455, 489, 518
BspPI GGATC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 368
BsrFI RCCGGY 2 cut(s) 284, 371
BssAI RCCGGY 2 cut(s) 284, 371
BssECI CCNNGG 6 cut(s) 46, 92, 144, 252, 354, 491
BssMI GATC 3 cut(s) 181, 277, 339
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 2 cut(s) 92, 144
BstACI GRCGYC 1 cut(s) 270
BstC8I GCNNGC 3 cut(s) 102, 166, 398
BstDSI CCRYGG 2 cut(s) 354, 491
BstFNI CGCG 3 cut(s) 168, 235, 426
BstHHI GCGC 2 cut(s) 170, 428
BstKTI GATC 3 cut(s) 184, 280, 342
BstMBI GATC 3 cut(s) 181, 277, 339
BstMCI CGRYCG 2 cut(s) 184, 354
BstMWI GCNNNNNNNGC 3 cut(s) 61, 167, 423
BstSCI CCNGG 3 cut(s) 45, 46, 342
BstSLI GKGCMC 1 cut(s) 336
BstUI CGCG 3 cut(s) 168, 235, 426
BstV1I GCAGC 2 cut(s) 76, 148
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BstZI CGGCCG 1 cut(s) 351
BsuI GTATCC 1 cut(s) 120
BsuRI GGCC 5 cut(s) 230, 334, 353, 478, 527
BtgI CCRYGG 2 cut(s) 354, 491
Cac8I GCNNGC 3 cut(s) 102, 166, 398
CfoI GCGC 2 cut(s) 170, 428
Cfr10I RCCGGY 2 cut(s) 284, 371
Cfr13I GGNCC 6 cut(s) 50, 332, 333, 431, 453, 526
Cfr9I CCCGGG 1 cut(s) 46
CseI GACGC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 186, 304
CspAI ACCGGT 1 cut(s) 371
CviQI GTAC 2 cut(s) 186, 304
DpnI GATC 3 cut(s) 183, 279, 341
DpnII GATC 3 cut(s) 181, 277, 339
EaeI YGGCCR 2 cut(s) 228, 351
EagI CGGCCG 1 cut(s) 351
EciI GGCGGA 1 cut(s) 42
EclXI CGGCCG 1 cut(s) 351
Eco130I CCWWGG 2 cut(s) 92, 144
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 3 cut(s) 50, 431, 453
Eco52I CGGCCG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 92, 144
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 2 cut(s) 92, 144
FaiI YATR 3 cut(s) 138, 195, 249
FaqI GGGAC 1 cut(s) 439
FauI CCCGC 4 cut(s) 50, 93, 173, 464
Fnu4HI GCNGC 4 cut(s) 65, 126, 141, 162
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 4 cut(s) 65, 126, 141, 162
GlaI GCGC 2 cut(s) 169, 427
GluI GCNGC 4 cut(s) 65, 126, 141, 162
HaeIII GGCC 5 cut(s) 230, 334, 353, 478, 527
HapII CCGG 8 cut(s) 47, 227, 285, 344, 372, 429, 445, 485
HgaI GACGC 1 cut(s) 278
HhaI GCGC 2 cut(s) 170, 428
Hin1I GRCGYC 1 cut(s) 270
Hin6I GCGC 2 cut(s) 168, 426
HinP1I GCGC 2 cut(s) 168, 426
HinfI GANTC 2 cut(s) 35, 244
HpaII CCGG 8 cut(s) 47, 227, 285, 344, 372, 429, 445, 485
HphI GGTGA 3 cut(s) 30, 304, 508
Hpy166II GTNNAC 1 cut(s) 295
Hpy188III TCNNGA 2 cut(s) 387, 472
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 68, 444, 499
HpyCH4V TGCA 1 cut(s) 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 167, 423
Hsp92I GRCGYC 1 cut(s) 270
HspAI GCGC 2 cut(s) 168, 426
Kzo9I GATC 3 cut(s) 181, 277, 339
LmnI GCTCC 2 cut(s) 389, 487
LpnPI CCDG 8 cut(s) 60, 240, 298, 357, 385, 442, 458, 498
Lsp1109I GCAGC 2 cut(s) 76, 148
MalI GATC 3 cut(s) 183, 279, 341
MboI GATC 3 cut(s) 181, 277, 339
MboII GAAGA 3 cut(s) 44, 287, 511
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 2 cut(s) 84, 404
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 9 cut(s) 33, 193, 234, 247, 250, 452, 468, 507, 539
MseI TTAA 1 cut(s) 117
MspI CCGG 8 cut(s) 47, 227, 285, 344, 372, 429, 445, 485
MspR9I CCNGG 3 cut(s) 47, 48, 344
MvnI CGCG 3 cut(s) 168, 235, 426
MwoI GCNNNNNNNGC 3 cut(s) 61, 167, 423
NciI CCSGG 3 cut(s) 47, 48, 344
NdeII GATC 3 cut(s) 181, 277, 339
NlaIV GGNNCC 6 cut(s) 51, 334, 370, 455, 489, 518
PcsI WCGNNNNNNNCGW 2 cut(s) 239, 356
PfeI GAWTC 1 cut(s) 244
PfoI TCCNGGA 1 cut(s) 342
PinAI ACCGGT 1 cut(s) 371
PkrI GCNGC 4 cut(s) 66, 127, 142, 163
Ple19I CGATCG 1 cut(s) 184
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PspN4I GGNNCC 6 cut(s) 51, 334, 370, 455, 489, 518
PspOMI GGGCCC 1 cut(s) 332
PspPI GGNCC 6 cut(s) 50, 332, 333, 431, 453, 526
PsrI GAACNNNNNNTAC 2 cut(s) 287, 319
PsuI RGATCY 1 cut(s) 277
PvuI CGATCG 1 cut(s) 184
RsaI GTAC 2 cut(s) 187, 305
RsaNI GTAC 2 cut(s) 186, 304
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 4 cut(s) 65, 126, 141, 162
Sau3AI GATC 3 cut(s) 181, 277, 339
Sau96I GGNCC 6 cut(s) 50, 332, 333, 431, 453, 526
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 3 cut(s) 47, 48, 344
SduI GDGCHC 1 cut(s) 336
SetI ASST 3 cut(s) 25, 261, 436
SgrAI CRCCGGYG 2 cut(s) 284, 371
SinI GGWCC 3 cut(s) 50, 431, 453
SmaI CCCGGG 1 cut(s) 48
Sse9I AATT 2 cut(s) 84, 404
StyD4I CCNGG 3 cut(s) 45, 46, 342
StyI CCWWGG 2 cut(s) 92, 144
TaqI TCGA 3 cut(s) 198, 242, 437
TasI AATT 2 cut(s) 84, 404
TauI GCSGC 2 cut(s) 128, 143
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseI GCWGC 2 cut(s) 64, 161
TspDTI ATGAA 4 cut(s) 135, 236, 327, 518
TspMI CCCGGG 1 cut(s) 46
VpaK11BI GGWCC 3 cut(s) 50, 431, 453
XapI RAATTY 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 2 cut(s) 76, 410
XmaI CCCGGG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.