Rmu_ssc0000295.1_g000043

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000295.1
OG0000214
Physical Location & Seq
Reverse (-)
155342 .. 155915
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000295.1_g000043.1.cds

Sequence Viewer

Length: 525 bp
atgagggtgttggaggtaactccttctgctgtggatgaggctaagatggtgcttcgcgaacatctgggtcctcaggtattggagactgacattctcccgcgagtcttggaagccctacggtatctttgcctggagaaggtattgaccttgcagcaatttagtgctattgacgatctgctgaatgaacttggtagggcccgccgcagtcaatcagcctcgaatgcccaggctcactacaatcgagaggctttgaatagcctctctcgagaaatggccggacatctctcgcggtccgacttcaaacttcggatcgaggacctccatgcctgtttagcctttgttgagaatgcgattgatgcagaagaagcccaactcgatgaaactttggctgcttctgaagaaatgggcagcaacctggcccatatcagagaacgggccactgaggctgaagctggtgccattgcggcaaacctctgcgtggaggaattttgcttgaaattgagctttgcgggccaatctttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.25

Weight (kDa)

4.83

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AccII CGCG 3 cut(s) 57, 100, 289
AciI CCGC 6 cut(s) 98, 199, 202, 289, 464, 509
AclWI GGATC 1 cut(s) 317
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 2 cut(s) 417, 468
AfiI CCNNNNNNNGG 2 cut(s) 136, 478
AgsI TTSAA 3 cut(s) 253, 301, 496
AjnI CCWGG 3 cut(s) 129, 225, 414
AluBI AGCT 2 cut(s) 452, 504
AluI AGCT 2 cut(s) 452, 504
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 5 cut(s) 195, 273, 417, 435, 511
ApaI GGGCCC 1 cut(s) 199
ApeKI GCWGC 3 cut(s) 151, 389, 408
ApoI RAATTY 1 cut(s) 485
AspS9I GGNCC 8 cut(s) 68, 195, 196, 291, 316, 418, 435, 511
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 3 cut(s) 68, 291, 316
AxyI CCTNAGG 1 cut(s) 72
BaeGI GKGCMC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 199
BbvI GCAGC 3 cut(s) 163, 376, 420
BccI CCATC 1 cut(s) 40
BciT130I CCWGG 3 cut(s) 131, 227, 416
BcoDI GTCTC 1 cut(s) 77
BglI GCCNNNNNGGC 2 cut(s) 443, 464
BisI GCNGC 5 cut(s) 152, 202, 390, 409, 465
BlsI GCNGC 5 cut(s) 153, 203, 391, 410, 466
Bme1390I CCNGG 3 cut(s) 131, 227, 416
Bme18I GGWCC 3 cut(s) 68, 291, 316
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 8 cut(s) 68, 195, 196, 291, 316, 418, 435, 511
BmiI GGNNCC 3 cut(s) 69, 197, 457
BmrFI CCNGG 3 cut(s) 131, 227, 416
BmsI GCATC 1 cut(s) 346
BpmI CTGGAG 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 478
Bse21I CCTNAGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 3 cut(s) 131, 227, 416
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 136, 478
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 2 cut(s) 86, 432
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 3 cut(s) 163, 376, 420
Bsh1236I CGCG 3 cut(s) 57, 100, 289
BshFI GGCC 5 cut(s) 197, 275, 419, 437, 513
BshNI GGYRCC 1 cut(s) 455
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 2 cut(s) 136, 478
BsmAI GTCTC 1 cut(s) 77
BsmI GAATGC 2 cut(s) 226, 352
BsnI GGCC 5 cut(s) 197, 275, 419, 437, 513
BsoBI CYCGRG 1 cut(s) 264
Bsp120I GGGCCC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 172, 309
Bsp68I TCGCGA 1 cut(s) 57
BspACI CCGC 6 cut(s) 98, 199, 202, 289, 464, 509
BspANI GGCC 5 cut(s) 197, 275, 419, 437, 513
BspCNI CTCAG 2 cut(s) 85, 433
BspFNI CGCG 3 cut(s) 57, 100, 289
BspLI GGNNCC 3 cut(s) 69, 197, 457
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 459
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 172, 309
Bst2UI CCWGG 3 cut(s) 131, 227, 416
Bst4CI ACNGT 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 199, 511
BstDEI CTNAG 3 cut(s) 42, 72, 441
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 3 cut(s) 57, 100, 289
BstKTI GATC 2 cut(s) 175, 312
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 172, 309
BstMWI GCNNNNNNNGC 7 cut(s) 221, 332, 356, 365, 443, 464, 510
BstNI CCWGG 3 cut(s) 131, 227, 416
BstSCI CCNGG 3 cut(s) 129, 225, 414
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 3 cut(s) 57, 100, 289
BstV1I GCAGC 3 cut(s) 163, 376, 420
Bsu36I CCTNAGG 1 cut(s) 72
BsuRI GGCC 5 cut(s) 197, 275, 419, 437, 513
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 438
BtuMI TCGCGA 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 199, 511
Cfr13I GGNCC 8 cut(s) 68, 195, 196, 291, 316, 418, 435, 511
CpoI CGGWCCG 1 cut(s) 291
CspI CGGWCCG 1 cut(s) 291
CviAII CATG 1 cut(s) 323
DdeI CTNAG 3 cut(s) 42, 72, 441
DpnI GATC 2 cut(s) 174, 311
DpnII GATC 2 cut(s) 172, 309
EaeI YGGCCR 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 3 cut(s) 68, 291, 316
Eco57I CTGAAG 2 cut(s) 417, 468
Eco81I CCTNAGG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 264
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoO109I RGGNCCY 3 cut(s) 68, 195, 316
EcoRII CCWGG 3 cut(s) 129, 225, 414
EcoT38I GRGCYC 1 cut(s) 199
FaeI CATG 1 cut(s) 326
FaiI YATR 2 cut(s) 324, 423
FatI CATG 1 cut(s) 322
FauI CCCGC 3 cut(s) 105, 206, 502
Fnu4HI GCNGC 5 cut(s) 152, 202, 390, 409, 465
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 5 cut(s) 152, 202, 390, 409, 465
GluI GCNGC 5 cut(s) 152, 202, 390, 409, 465
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 5 cut(s) 197, 275, 419, 437, 513
HapII CCGG 1 cut(s) 276
Hin1II CATG 1 cut(s) 326
HinfI GANTC 1 cut(s) 102
HpaII CCGG 1 cut(s) 276
Hpy188I TCNGA 4 cut(s) 295, 309, 397, 428
Hpy188III TCNNGA 4 cut(s) 56, 242, 264, 266
HpyAV CCTTC 2 cut(s) 33, 130
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 151, 359
HpyF10VI GCNNNNNNNGC 7 cut(s) 221, 332, 356, 365, 443, 464, 510
HpyF3I CTNAG 3 cut(s) 42, 72, 441
Hsp92II CATG 1 cut(s) 326
Kzo9I GATC 2 cut(s) 172, 309
Lsp1109I GCAGC 3 cut(s) 163, 376, 420
LweI GCATC 1 cut(s) 346
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 174, 311
MboI GATC 2 cut(s) 172, 309
MboII GAAGA 2 cut(s) 374, 410
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 3 cut(s) 155, 485, 497
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 318
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 3 cut(s) 131, 227, 416
Mva1269I GAATGC 2 cut(s) 226, 352
MvaI CCWGG 3 cut(s) 131, 227, 416
MvnI CGCG 3 cut(s) 57, 100, 289
MwoI GCNNNNNNNGC 7 cut(s) 221, 332, 356, 365, 443, 464, 510
NdeII GATC 2 cut(s) 172, 309
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 3 cut(s) 69, 197, 457
NruI TCGCGA 1 cut(s) 57
PaeR7I CTCGAG 1 cut(s) 264
PctI GAATGC 2 cut(s) 226, 352
PkrI GCNGC 5 cut(s) 153, 203, 391, 410, 466
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PpuMI RGGWCCY 2 cut(s) 68, 316
Psp5II RGGWCCY 2 cut(s) 68, 316
Psp6I CCWGG 3 cut(s) 129, 225, 414
PspGI CCWGG 3 cut(s) 129, 225, 414
PspN4I GGNNCC 3 cut(s) 69, 197, 457
PspOMI GGGCCC 1 cut(s) 195
PspPI GGNCC 8 cut(s) 68, 195, 196, 291, 316, 418, 435, 511
PspPPI RGGWCCY 2 cut(s) 68, 316
RruI TCGCGA 1 cut(s) 57
Rsr2I CGGWCCG 1 cut(s) 291
RsrII CGGWCCG 1 cut(s) 291
SatI GCNGC 5 cut(s) 152, 202, 390, 409, 465
Sau3AI GATC 2 cut(s) 172, 309
Sau96I GGNCC 8 cut(s) 68, 195, 196, 291, 316, 418, 435, 511
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 3 cut(s) 131, 227, 416
SduI GDGCHC 1 cut(s) 199
SetI ASST 9 cut(s) 18, 78, 141, 149, 321, 417, 454, 474, 506
SfaNI GCATC 1 cut(s) 346
Sfr274I CTCGAG 1 cut(s) 264
SinI GGWCC 3 cut(s) 68, 291, 316
SlaI CTCGAG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 3 cut(s) 155, 485, 497
SsiI CCGC 6 cut(s) 98, 199, 202, 289, 464, 509
StyD4I CCNGG 3 cut(s) 129, 225, 414
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 5 cut(s) 218, 241, 265, 312, 375
TasI AATT 3 cut(s) 155, 485, 497
TauI GCSGC 2 cut(s) 204, 467
TscAI CASTG 1 cut(s) 445
TseI GCWGC 3 cut(s) 151, 389, 408
TspDTI ATGAA 2 cut(s) 198, 393
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 3 cut(s) 68, 291, 316
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 485
XhoI CTCGAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.