Rmu_sc0000810.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000810.1
OG0000214
Physical Location & Seq
Reverse (-)
31590 .. 32681
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000810.1_g000011.1.cds

Sequence Viewer

Length: 885 bp
atgacgacagagattctcgcggcactagaggttcaagaggtgaatgaggcggggcctcttccttttggtgaccacgtaccagatattgacccgacagctcgagaggtggctgcaaacgttgctggtcttatcggcgggacagtcgccccagagatggaaaatgatactaacagtgattcccctgaggctgaagggatagaccaacctgttgaagatgaagaaactgaggaagctgtccacccttttgcattggtggttcgtgatcatgtggcgcctctgccacttcctcctcctaccagattcgagagattgatgagggtgttggaggtaattcctccttctgctgtggatgaggctaaaatggtgcttcacaaacatctgggtcctcaggtattagagactgacattctcccgcgagtcttagaagccctaaggtatctttgccaggagaaggtattgaccttgcagcaatttagtgctattgacgatctgttgaatgaacttggtagggctcgccgccatcaatcagccgcgaacgcccaggctaacaacgctcgagaggctttgaataacctttcccaagaaatggacatcccccgcggtattttaaatgagcgagcaatccgcctgcgggaactacaaatccaaaggtccaacttcaaacttcggatcgacgatctccaagcccgtttagcctttgttgagaatgcgattgttgcagaagaagctcaactcgatgaacctttggctgcttctaaagaaatgggccgcaacctggcccgtatcagagatcgggccactcaggccgaagctggtgctattgaggcgaaacgccacatggaggaactttgtttgaaattgagctttgcaggccaatctttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

32.52

Weight (kDa)

4.74

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 271
AccB7I CCANNNNNTGG 1 cut(s) 586
AccII CGCG 4 cut(s) 20, 415, 533, 600
AclI AACGTT 1 cut(s) 117
AclWI GGATC 1 cut(s) 677
AcuI CTGAAG 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 272
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 6 cut(s) 154, 451, 586, 631, 775, 841
AgsI TTSAA 6 cut(s) 35, 212, 496, 568, 661, 856
AjnI CCWGG 3 cut(s) 444, 540, 774
AloI GAACNNNNNNTCC 2 cut(s) 627, 659
AluBI AGCT 5 cut(s) 98, 233, 728, 812, 864
AluI AGCT 5 cut(s) 98, 233, 728, 812, 864
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 677
Ama87I CYCGRG 2 cut(s) 99, 555
AoxI GGCC 6 cut(s) 53, 766, 777, 795, 804, 871
ApeKI GCWGC 3 cut(s) 110, 466, 749
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 6 cut(s) 53, 383, 651, 766, 778, 795
AsuHPI GGTGA 2 cut(s) 52, 80
AvaI CYCGRG 2 cut(s) 99, 555
AvaII GGWCC 2 cut(s) 383, 651
AxyI CCTNAGG 3 cut(s) 183, 387, 431
BanI GGYRCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 514
BbvI GCAGC 3 cut(s) 97, 478, 736
BccI CCATC 2 cut(s) 148, 528
BcgI CGANNNNNNTGC 2 cut(s) 797, 831
BciT130I CCWGG 3 cut(s) 446, 542, 776
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 275
BglI GCCNNNNNGGC 1 cut(s) 803
BisI GCNGC 7 cut(s) 21, 111, 467, 517, 531, 750, 769
BlsI GCNGC 7 cut(s) 22, 112, 468, 518, 532, 751, 770
Bme1390I CCNGG 3 cut(s) 446, 542, 776
Bme18I GGWCC 2 cut(s) 383, 651
BmeT110I CYCGRG 2 cut(s) 99, 555
BmgT120I GGNCC 6 cut(s) 53, 383, 651, 766, 778, 795
BmiI GGNNCC 3 cut(s) 54, 273, 384
BmrFI CCNGG 3 cut(s) 446, 542, 776
BsaAI YACGTR 1 cut(s) 76
BsaHI GRCGYC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 540, 598
Bsc4I CCNNNNNNNGG 6 cut(s) 154, 451, 586, 631, 775, 841
Bse21I CCTNAGG 3 cut(s) 183, 387, 431
BseBI CCWGG 3 cut(s) 446, 542, 776
BseDI CCNNGG 2 cut(s) 540, 598
BseGI GGATG 2 cut(s) 355, 591
BseLI CCNNNNNNNGG 6 cut(s) 154, 451, 586, 631, 775, 841
BseMII CTCAG 4 cut(s) 174, 216, 401, 815
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 97, 478, 736
Bsh1236I CGCG 4 cut(s) 20, 415, 533, 600
BshFI GGCC 6 cut(s) 55, 768, 779, 797, 806, 873
BshNI GGYRCC 1 cut(s) 271
BsiHKCI CYCGRG 2 cut(s) 99, 555
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 6 cut(s) 154, 451, 586, 631, 775, 841
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 6 cut(s) 55, 768, 779, 797, 806, 873
BsoBI CYCGRG 2 cut(s) 99, 555
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 5 cut(s) 262, 487, 669, 676, 790
BspANI GGCC 6 cut(s) 55, 768, 779, 797, 806, 873
BspCNI CTCAG 4 cut(s) 175, 217, 400, 814
BspFNI CGCG 4 cut(s) 20, 415, 533, 600
BspLI GGNNCC 3 cut(s) 54, 273, 384
BspPI GGATC 1 cut(s) 677
BspT107I GGYRCC 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 540, 598
BssMI GATC 5 cut(s) 262, 487, 669, 676, 790
BssNI GRCGYC 1 cut(s) 272
Bst2UI CCWGG 3 cut(s) 446, 542, 776
Bst4CI ACNGT 2 cut(s) 142, 173
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 119
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 4 cut(s) 514, 618, 629, 871
BstDEI CTNAG 6 cut(s) 183, 225, 387, 421, 431, 801
BstDSI CCRYGG 1 cut(s) 598
BstEII GGTNACC 1 cut(s) 68
BstF5I GGATG 2 cut(s) 355, 591
BstFNI CGCG 4 cut(s) 20, 415, 533, 600
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 5 cut(s) 265, 490, 672, 679, 793
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 5 cut(s) 262, 487, 669, 676, 790
BstNI CCWGG 3 cut(s) 446, 542, 776
BstPI GGTNACC 1 cut(s) 68
BstSCI CCNGG 3 cut(s) 444, 540, 774
BstUI CGCG 4 cut(s) 20, 415, 533, 600
BstV1I GCAGC 3 cut(s) 97, 478, 736
Bsu36I CCTNAGG 3 cut(s) 183, 387, 431
BsuRI GGCC 6 cut(s) 55, 768, 779, 797, 806, 873
BtgI CCRYGG 1 cut(s) 598
BtsCI GGATG 2 cut(s) 355, 591
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 4 cut(s) 514, 618, 629, 871
CfoI GCGC 1 cut(s) 274
Cfr13I GGNCC 6 cut(s) 53, 383, 651, 766, 778, 795
Cfr42I CCGCGG 1 cut(s) 601
Csp6I GTAC 1 cut(s) 77
CviAII CATG 2 cut(s) 266, 838
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 6 cut(s) 183, 225, 387, 421, 431, 801
DinI GGCGCC 1 cut(s) 273
DpnI GATC 5 cut(s) 264, 489, 671, 678, 792
DpnII GATC 5 cut(s) 262, 487, 669, 676, 790
DraI TTTAAA 1 cut(s) 609
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 614
Eco24I GRGCYC 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 383, 651
Eco57I CTGAAG 1 cut(s) 210
Eco81I CCTNAGG 3 cut(s) 183, 387, 431
Eco88I CYCGRG 2 cut(s) 99, 555
Eco91I GGTNACC 1 cut(s) 68
EcoO109I RGGNCCY 2 cut(s) 53, 383
EcoO65I GGTNACC 1 cut(s) 68
EcoRII CCWGG 3 cut(s) 444, 540, 774
EcoT38I GRGCYC 1 cut(s) 514
EgeI GGCGCC 1 cut(s) 273
EheI GGCGCC 1 cut(s) 273
FaeI CATG 2 cut(s) 269, 841
FaiI YATR 2 cut(s) 267, 839
FaqI GGGAC 1 cut(s) 151
FatI CATG 2 cut(s) 265, 837
FauI CCCGC 5 cut(s) 43, 128, 420, 605, 624
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 7 cut(s) 21, 111, 467, 517, 531, 750, 769
FokI GGATG 2 cut(s) 362, 578
FriOI GRGCYC 1 cut(s) 514
Fsp4HI GCNGC 7 cut(s) 21, 111, 467, 517, 531, 750, 769
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 273
GluI GCNGC 7 cut(s) 21, 111, 467, 517, 531, 750, 769
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 6 cut(s) 55, 768, 779, 797, 806, 873
HhaI GCGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 2 cut(s) 269, 841
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HinfI GANTC 4 cut(s) 13, 176, 300, 417
HphI GGTGA 2 cut(s) 52, 80
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 669, 788
Hpy188III TCNNGA 5 cut(s) 35, 101, 260, 304, 557
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 677
HpyAV CCTTC 3 cut(s) 185, 348, 445
HpyCH4III ACNGT 2 cut(s) 142, 173
HpyCH4IV ACGT 2 cut(s) 75, 117
HpyCH4V TGCA 5 cut(s) 113, 248, 466, 719, 869
HpyF3I CTNAG 6 cut(s) 183, 225, 387, 421, 431, 801
HpySE526I ACGT 2 cut(s) 75, 117
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 2 cut(s) 269, 841
HspAI GCGC 1 cut(s) 272
KasI GGCGCC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 262
KspI CCGCGG 1 cut(s) 601
Kzo9I GATC 5 cut(s) 262, 487, 669, 676, 790
Lsp1109I GCAGC 3 cut(s) 97, 478, 736
MaeI CTAG 1 cut(s) 26
MaeII ACGT 2 cut(s) 75, 117
MaeIII GTNAC 1 cut(s) 68
MalI GATC 5 cut(s) 264, 489, 671, 678, 792
MboI GATC 5 cut(s) 262, 487, 669, 676, 790
MboII GAAGA 4 cut(s) 50, 224, 230, 734
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 3 cut(s) 330, 470, 857
Mly113I GGCGCC 1 cut(s) 272
MlyI GAGTC 1 cut(s) 426
MmeI TCCRAC 2 cut(s) 303, 678
MseI TTAA 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 600
MspR9I CCNGG 3 cut(s) 446, 542, 776
Mva1269I GAATGC 1 cut(s) 712
MvaI CCWGG 3 cut(s) 446, 542, 776
MvnI CGCG 4 cut(s) 20, 415, 533, 600
NarI GGCGCC 1 cut(s) 272
NdeII GATC 5 cut(s) 262, 487, 669, 676, 790
NlaIII CATG 2 cut(s) 269, 841
NlaIV GGNNCC 3 cut(s) 54, 273, 384
NmuCI GTSAC 1 cut(s) 68
PaeR7I CTCGAG 2 cut(s) 99, 555
PctI GAATGC 1 cut(s) 712
PfeI GAWTC 3 cut(s) 13, 176, 300
PflMI CCANNNNNTGG 1 cut(s) 586
PkrI GCNGC 7 cut(s) 22, 112, 468, 518, 532, 751, 770
PleI GAGTC 1 cut(s) 425
PluTI GGCGCC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 425
Ppu21I YACGTR 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 383
Psp1406I AACGTT 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 3 cut(s) 444, 540, 774
PspEI GGTNACC 1 cut(s) 68
PspGI CCWGG 3 cut(s) 444, 540, 774
PspN4I GGNNCC 3 cut(s) 54, 273, 384
PspPI GGNCC 6 cut(s) 53, 383, 651, 766, 778, 795
PspPPI RGGWCCY 1 cut(s) 383
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SacII CCGCGG 1 cut(s) 601
SaqAI TTAA 1 cut(s) 608
SatI GCNGC 7 cut(s) 21, 111, 467, 517, 531, 750, 769
Sau3AI GATC 5 cut(s) 262, 487, 669, 676, 790
Sau96I GGNCC 6 cut(s) 53, 383, 651, 766, 778, 795
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 3 cut(s) 446, 542, 776
SduI GDGCHC 1 cut(s) 514
SfiI GGCCNNNNNGGCC 1 cut(s) 803
SfoI GGCGCC 1 cut(s) 273
Sfr274I CTCGAG 2 cut(s) 99, 555
Sfr303I CCGCGG 1 cut(s) 601
SgrBI CCGCGG 1 cut(s) 601
SinI GGWCC 2 cut(s) 383, 651
SlaI CTCGAG 2 cut(s) 99, 555
SmlI CTYRAG 2 cut(s) 99, 555
SmoI CTYRAG 2 cut(s) 99, 555
Sse9I AATT 3 cut(s) 330, 470, 857
SspDI GGCGCC 1 cut(s) 271
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 444, 540, 774
TaaI ACNGT 2 cut(s) 142, 173
TaiI ACGT 2 cut(s) 78, 120
TaqI TCGA 5 cut(s) 100, 303, 556, 672, 735
TasI AATT 3 cut(s) 330, 470, 857
TauI GCSGC 4 cut(s) 23, 519, 533, 771
TfiI GAWTC 3 cut(s) 13, 176, 300
Tru1I TTAA 1 cut(s) 608
Tru9I TTAA 1 cut(s) 608
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 3 cut(s) 110, 466, 749
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 231, 513, 753
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 586
VpaK11BI GGWCC 2 cut(s) 383, 651
XhoI CTCGAG 2 cut(s) 99, 555
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.