Rmu_sc0001455.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001455.1
OG0000214
Physical Location & Seq
Forward (+)
41927 .. 45297
3371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001455.1_g000009.1.cds

Sequence Viewer

Length: 2520 bp
atggcatccaagaaaccattcgttatcgatcaggcagatgaaatcactgagaaagccgtattcacctggcggactaacatgagtattcgatgtagacgtcagatcggagaggagagaagtcgactgatgggctttggtggtggtgatagtcaagcgacggctcttcagcaggtgcctggtgattttagtagttggggaccaaggaggaaagtgggcttctggcctaccgttgctcccgaggaaaagatttggtatcaggaggtccgagcgagagatttggcccgatgggatgtggtgggtatcacccaaaccatcgatctatgcttctgtcatctccataatacttgccctacaccgctagccgccgctttttgcttctggaacacctccagcaatacattcgatttctggtttgggcagatgagcataactttgctggatgttcttaccatcacgaggttgcccattgactgggccataatgcgccccttcgatatcgacattagtggccctttctggatccttgccttttggctgcagatttatttcccttgcttccatcgcgatgatattccaaaggaacctccagtcgattcccttttggggaactggctttgccgtaatgtaaggtatcgagctcctccctactccgagtgttttatttacttgtacttgatgggagagatgtcggacccaaaaatagtcctttctaggcgtttccctcatccccttgacgatggctttctacccagcggacgagatcatagcgaaagagccctcctggcctttcgtcgcgccatctcctgcttggatattcgtctttccaccgacttcgtaagttatgagctctatgcccctaaccacttcgctcgccaatttgggttggcccagttgagtcagtttactttgatagtgattcccccatgggtcagagcgttgtaccccctcaacgatgtcgacgatgattatgctgattggtggaaagaagtgtccgttaactgttgggacttgccacatgacgaactcttcgtcctgatctttcgtggcatgagtagtcctggttcggagaaccgcgagattcttgagcgcttctccaaagctgcagcacaacccctgcgacctattctaccctctcgctcatcgcatccagggatacaaatctacgagcttagggcaacacaaactaccaggagcaagacaacctctgttcaggtctggaaacaaagggcaatagtagaggagactcctgatggagagtcttctcatgatgaagatcctgctgaggccactgctgtctttgcttgcaaatgcgatatgtttcaatccgtcgaagggagttttgaagatgacgaacctctgggaatgcgattggtccgtcaaaggaccactgatccctctcgcctgagtgaggctggaagctcagcccctgcagaagagccaactctctcgctagttcaagcatcaactaatcccgtggcgcctcttccatctcccacatctacagagcatctgcaaggtcctaccattctaataacgatcttcgatgacgactccttggagcatgaaagagtggaaagccactctaaggcttctgccgcttatgaggaactgatgacgacagagattctcacggcactagaggtccaaggggtgaatgaggtaaggcctcttcctcttggtgaccacgtaccaaatattgacccgacagctcgagaggattctgtttgtaccgaggaggtggctacaaacactgaggatcctatcggcgggacagtcgcctcagagatggaaaatgatactgacgatggtgattctcctgcggctgaagggatagacaaacctattgaagatgaagaaactgaggaagctgtccacccttttgcattggtggttcgtgatcctgtggcgcctccgccgcctcctcctcataccagattcgagagattgatgagggtgttggaggtaactcctccttctactgtggatgacgctaagatggtgcttcacgaacatctggatccacgggtattggagactgacatcctcccgcgagtcttggaagctctaaggtatcttcgccaggagaagattttgactctgtggcaatttagtgctatcgactctctgctgaatgaacttgatatggcccgccgaagtcaattagccgcgaacacccaggctcaagatgctcaagaggctgtgaatagtgtctctcgagaaatggacatcccccgcgatattttaaatgaacgagccatccacatgggggaactacaaatccaaaggtctgacttcaaacttcatatcaaggacctccaagcccatttagcctttgttgagaatgcgattgttgcagaagaagctcaactcgatgaacctttggctgcttctgaagaaatgggcggcaacctggcccatatcagagatcgggccactcaggccgaagctggtgccattgcggcgaaatgccacgtggaggaactttgtttgaaattgagctttgcgggccaatctttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

839

Amino Acids

94.48

Weight (kDa)

4.74

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 160
AatII GACGTC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 160
AccB1I GGYRCC 4 cut(s) 172, 1477, 1906, 2450
AccB7I CCANNNNNTGG 1 cut(s) 471
AccI GTMKAC 3 cut(s) 94, 121, 957
AccII CGCG 6 cut(s) 564, 795, 1074, 2050, 2168, 2235
AclWI GGATC 9 cut(s) 514, 527, 1268, 1385, 1751, 1764, 1892, 2012, 2025
AcuI CTGAAG 3 cut(s) 149, 1845, 2412
AcvI CACGTG 1 cut(s) 2473
AcyI GRCGYC 3 cut(s) 97, 1478, 1907
AfaI GTAC 4 cut(s) 671, 941, 1689, 1729
AfeI AGCGCT 1 cut(s) 1088
AfiI CCNNNNNNNGG 9 cut(s) 456, 471, 603, 1332, 1408, 1585, 1766, 2266, 2476
AgsI TTSAA 6 cut(s) 1322, 1343, 1457, 1847, 2296, 2491
AjnI CCWGG 9 cut(s) 65, 175, 780, 1057, 1147, 1187, 2079, 2175, 2409
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AloI GAACNNNNNNTCC 6 cut(s) 1014, 1046, 2241, 2262, 2273, 2294
Alw21I GWGCWC 2 cut(s) 640, 849
Alw26I GTCTC 3 cut(s) 1235, 2027, 2215
AlwI GGATC 9 cut(s) 514, 527, 1268, 1385, 1751, 1764, 1892, 2012, 2025
AlwNI CAGNNNCTG 1 cut(s) 1427
Ama87I CYCGRG 3 cut(s) 236, 1710, 2214
Aor51HI AGCGCT 1 cut(s) 1088
ApeKI GCWGC 4 cut(s) 535, 1100, 1103, 2384
ArsI GACNNNNNNTTYG 4 cut(s) 1010, 1014, 1042, 1046
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 5 cut(s) 486, 797, 1089, 1480, 1909
AsuHPI GGTGA 7 cut(s) 55, 155, 191, 295, 1663, 1691, 1820
AsuNHI GCTAGC 1 cut(s) 358
AvaI CYCGRG 3 cut(s) 236, 1710, 2214
AvaII GGWCC 8 cut(s) 197, 262, 691, 1372, 1383, 1517, 1642, 2311
BamHI GGATCC 3 cut(s) 519, 1756, 2017
BanI GGYRCC 4 cut(s) 172, 1477, 1906, 2450
BanII GRGCYC 3 cut(s) 640, 778, 849
BarI GAAGNNNNNNTAC 2 cut(s) 1653, 1685
BauI CACGAG 1 cut(s) 454
BbrPI CACGTG 1 cut(s) 2473
BbsI GAAGAC 1 cut(s) 1251
Bbv12I GWGCWC 2 cut(s) 640, 849
BbvCI CCTCAGC 1 cut(s) 1281
BbvI GCAGC 4 cut(s) 522, 1087, 1115, 2371
BceAI ACGGC 4 cut(s) 41, 174, 603, 1647
BcgI CGANNNNNNTGC 6 cut(s) 382, 416, 950, 984, 2432, 2466
BciT130I CCWGG 9 cut(s) 67, 177, 782, 1059, 1149, 1189, 2081, 2177, 2411
BciVI GTATCC 1 cut(s) 1146
BcoDI GTCTC 3 cut(s) 1235, 2027, 2215
BfaI CTAG 4 cut(s) 359, 711, 1451, 1637
BfmI CTRYAG 4 cut(s) 536, 1101, 1428, 1500
BfoI RGCGCY 3 cut(s) 1090, 1481, 1910
BfuAI ACCTGC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 1146
BglI GCCNNNNNGGC 3 cut(s) 782, 2438, 2459
BlpI GCTNAGC 1 cut(s) 1420
Bme1390I CCNGG 9 cut(s) 67, 177, 782, 1059, 1149, 1189, 2081, 2177, 2411
Bme18I GGWCC 8 cut(s) 197, 262, 691, 1372, 1383, 1517, 1642, 2311
BmeT110I CYCGRG 3 cut(s) 236, 1710, 2214
BmrFI CCNGG 9 cut(s) 67, 177, 782, 1059, 1149, 1189, 2081, 2177, 2411
BmrI ACTGGG 2 cut(s) 481, 883
BmsI GCATC 5 cut(s) 14, 1153, 1469, 1516, 2176
BmtI GCTAGC 1 cut(s) 362
BmuI ACTGGG 2 cut(s) 481, 883
BpiI GAAGAC 1 cut(s) 1251
BplI GAGNNNNNCTC 2 cut(s) 1076, 1108
BpmI CTGGAG 2 cut(s) 373, 570
Bpu10I CCTNAGC 2 cut(s) 1169, 1281
Bpu1102I GCTNAGC 1 cut(s) 1420
BpuEI CTTGAG 3 cut(s) 1103, 2166, 2175
Bsa29I ATCGAT 2 cut(s) 27, 315
BsaAI YACGTR 2 cut(s) 1687, 2473
BsaBI GATNNNNATC 2 cut(s) 1157, 1272
BsaHI GRCGYC 3 cut(s) 97, 1478, 1907
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 9 cut(s) 456, 471, 603, 1332, 1408, 1585, 1766, 2266, 2476
Bse1I ACTGG 4 cut(s) 476, 587, 614, 889
Bse3DI GCAATG 1 cut(s) 2454
Bse8I GATNNNNATC 2 cut(s) 1157, 1272
BseBI CCWGG 9 cut(s) 67, 177, 782, 1059, 1149, 1189, 2081, 2177, 2411
BseCI ATCGAT 2 cut(s) 27, 315
BseGI GGATG 9 cut(s) 5, 295, 445, 724, 1144, 1990, 2040, 2226, 2256
BseJI GATNNNNATC 2 cut(s) 1157, 1272
BseLI CCNNNNNNNGG 9 cut(s) 456, 471, 603, 1332, 1408, 1585, 1766, 2266, 2476
BseMI GCAATG 1 cut(s) 2454
BseMII CTCAG 8 cut(s) 39, 1272, 1394, 1434, 1743, 1794, 1851, 2450
BseNI ACTGG 4 cut(s) 476, 587, 614, 889
BseRI GAGGAG 7 cut(s) 125, 630, 1253, 1748, 1911, 1914, 1959
BseXI GCAGC 4 cut(s) 522, 1087, 1115, 2371
BseYI CCCAGC 1 cut(s) 749
Bsh1236I CGCG 6 cut(s) 564, 795, 1074, 2050, 2168, 2235
BshNI GGYRCC 4 cut(s) 172, 1477, 1906, 2450
BshVI ATCGAT 2 cut(s) 27, 315
BsiHKAI GWGCWC 2 cut(s) 640, 849
BsiHKCI CYCGRG 3 cut(s) 236, 1710, 2214
BslFI GGGAC 3 cut(s) 210, 1019, 1783
BslI CCNNNNNNNGG 9 cut(s) 456, 471, 603, 1332, 1408, 1585, 1766, 2266, 2476
BsmAI GTCTC 3 cut(s) 1235, 2027, 2215
BsmFI GGGAC 3 cut(s) 210, 1019, 1783
BsmI GAATGC 2 cut(s) 1368, 2347
BsoBI CYCGRG 3 cut(s) 236, 1710, 2214
Bsp1286I GDGCHC 3 cut(s) 640, 778, 849
Bsp1720I GCTNAGC 1 cut(s) 1420
Bsp19I CCATGG 1 cut(s) 923
Bsp68I TCGCGA 1 cut(s) 564
BspCNI CTCAG 8 cut(s) 40, 1273, 1395, 1433, 1744, 1793, 1852, 2449
BspDI ATCGAT 2 cut(s) 27, 315
BspFNI CGCG 6 cut(s) 564, 795, 1074, 2050, 2168, 2235
BspHI TCATGA 1 cut(s) 1264
BspMAI CTGCAG 3 cut(s) 540, 1105, 1432
BspMI ACCTGC 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 362
BspPI GGATC 9 cut(s) 514, 527, 1268, 1385, 1751, 1764, 1892, 2012, 2025
BspQI GCTCTTC 2 cut(s) 168, 1428
BspT107I GGYRCC 4 cut(s) 172, 1477, 1906, 2450
BsrDI GCAATG 1 cut(s) 2454
BsrI ACTGG 4 cut(s) 476, 587, 614, 889
BssNI GRCGYC 3 cut(s) 97, 1478, 1907
BssSI CACGAG 1 cut(s) 454
BssT1I CCWWGG 4 cut(s) 200, 923, 1554, 1645
Bst2BI CACGAG 1 cut(s) 454
Bst2UI CCWGG 9 cut(s) 67, 177, 782, 1059, 1149, 1189, 2081, 2177, 2411
Bst4CI ACNGT 4 cut(s) 229, 1001, 1774, 1981
Bst6I CTCTTC 5 cut(s) 168, 1031, 1428, 1488, 1674
BstACI GRCGYC 3 cut(s) 97, 1478, 1907
BstBAI YACGTR 2 cut(s) 1687, 2473
BstC8I GCNNGC 5 cut(s) 360, 871, 1303, 2149, 2506
BstDSI CCRYGG 3 cut(s) 923, 1473, 2021
BstEII GGTNACC 1 cut(s) 1679
BstENI CCTNNNNNAGG 1 cut(s) 1406
BstF5I GGATG 9 cut(s) 5, 295, 445, 724, 1144, 1990, 2040, 2226, 2256
BstFNI CGCG 6 cut(s) 564, 795, 1074, 2050, 2168, 2235
BstH2I RGCGCY 3 cut(s) 1090, 1481, 1910
BstHHI GCGC 5 cut(s) 486, 797, 1089, 1480, 1909
BstMAI GTCTC 3 cut(s) 1235, 2027, 2215
BstNI CCWGG 9 cut(s) 67, 177, 782, 1059, 1149, 1189, 2081, 2177, 2411
BstPI GGTNACC 1 cut(s) 1679
BstSCI CCNGG 9 cut(s) 65, 175, 780, 1057, 1147, 1187, 2079, 2175, 2409
BstSFI CTRYAG 4 cut(s) 536, 1101, 1428, 1500
BstUI CGCG 6 cut(s) 564, 795, 1074, 2050, 2168, 2235
BstV1I GCAGC 4 cut(s) 522, 1087, 1115, 2371
BstV2I GAAGAC 1 cut(s) 1251
BstX2I RGATCY 4 cut(s) 519, 1273, 1756, 2017
BstXI CCANNNNNNTGG 1 cut(s) 2263
BstYI RGATCY 4 cut(s) 519, 1273, 1756, 2017
Bsu15I ATCGAT 2 cut(s) 27, 315
BsuI GTATCC 1 cut(s) 1146
BsuTUI ATCGAT 2 cut(s) 27, 315
BtgI CCRYGG 3 cut(s) 923, 1473, 2021
BtgZI GCGATG 3 cut(s) 545, 579, 1125
BtsCI GGATG 9 cut(s) 5, 295, 445, 724, 1144, 1990, 2040, 2226, 2256
BtsI GCAGTG 1 cut(s) 1287
BtsIMutI CAGTG 4 cut(s) 45, 1287, 1386, 1749
BtuMI TCGCGA 1 cut(s) 564
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 5 cut(s) 360, 871, 1303, 2149, 2506
CaiI CAGNNNCTG 1 cut(s) 1427
CciI TCATGA 1 cut(s) 1264
CfoI GCGC 5 cut(s) 486, 797, 1089, 1480, 1909
ClaI ATCGAT 2 cut(s) 27, 315
CseI GACGC 1 cut(s) 1997
Csp6I GTAC 4 cut(s) 670, 940, 1688, 1728
CspCI CAANNNNNGTGG 2 cut(s) 2010, 2045
CviAII CATG 7 cut(s) 79, 924, 1016, 1048, 1265, 1562, 2263
CviQI GTAC 4 cut(s) 670, 940, 1688, 1728
DinI GGCGCC 2 cut(s) 1479, 1908
DraI TTTAAA 1 cut(s) 2244
Eam1104I CTCTTC 5 cut(s) 168, 1031, 1428, 1488, 1674
EarI CTCTTC 5 cut(s) 168, 1031, 1428, 1488, 1674
EciI GGCGGA 2 cut(s) 85, 1902
Ecl136II GAGCTC 2 cut(s) 638, 847
Eco130I CCWWGG 4 cut(s) 200, 923, 1554, 1645
Eco147I AGGCCT 1 cut(s) 1666
Eco24I GRGCYC 3 cut(s) 640, 778, 849
Eco32I GATATC 1 cut(s) 496
Eco47I GGWCC 8 cut(s) 197, 262, 691, 1372, 1383, 1517, 1642, 2311
Eco47III AGCGCT 1 cut(s) 1088
Eco53kI GAGCTC 2 cut(s) 638, 847
Eco57I CTGAAG 3 cut(s) 149, 1845, 2412
Eco72I CACGTG 1 cut(s) 2473
Eco88I CYCGRG 3 cut(s) 236, 1710, 2214
Eco91I GGTNACC 1 cut(s) 1679
EcoICRI GAGCTC 2 cut(s) 638, 847
EcoNI CCTNNNNNAGG 1 cut(s) 1406
EcoO109I RGGNCCY 2 cut(s) 1517, 2311
EcoO65I GGTNACC 1 cut(s) 1679
EcoRII CCWGG 9 cut(s) 65, 175, 780, 1057, 1147, 1187, 2079, 2175, 2409
EcoRV GATATC 1 cut(s) 496
EcoT14I CCWWGG 4 cut(s) 200, 923, 1554, 1645
EcoT38I GRGCYC 3 cut(s) 640, 778, 849
EgeI GGCGCC 2 cut(s) 1479, 1908
EheI GGCGCC 2 cut(s) 1479, 1908
ErhI CCWWGG 4 cut(s) 200, 923, 1554, 1645
FaeI CATG 7 cut(s) 82, 927, 1019, 1051, 1268, 1565, 2266
FaqI GGGAC 3 cut(s) 210, 1019, 1783
FatI CATG 7 cut(s) 78, 923, 1015, 1047, 1264, 1561, 2262
FauI CCCGC 5 cut(s) 1760, 2055, 2156, 2240, 2497
FblI GTMKAC 3 cut(s) 94, 121, 957
FokI GGATG 8 cut(s) 302, 452, 711, 1131, 1997, 2027, 2213, 2243
FriOI GRGCYC 3 cut(s) 640, 778, 849
FspBI CTAG 4 cut(s) 359, 711, 1451, 1637
GlaI GCGC 5 cut(s) 485, 796, 1088, 1479, 1908
GsaI CCCAGC 1 cut(s) 753
GsuI CTGGAG 2 cut(s) 373, 570
HaeII RGCGCY 3 cut(s) 1090, 1481, 1910
HgaI GACGC 1 cut(s) 1997
HhaI GCGC 5 cut(s) 486, 797, 1089, 1480, 1909
Hin1I GRCGYC 3 cut(s) 97, 1478, 1907
Hin1II CATG 7 cut(s) 82, 927, 1019, 1051, 1268, 1565, 2266
Hin6I GCGC 5 cut(s) 484, 795, 1087, 1478, 1907
HinP1I GCGC 5 cut(s) 484, 795, 1087, 1478, 1907
HincII GTYRAC 3 cut(s) 122, 958, 997
HindII GTYRAC 3 cut(s) 122, 958, 997
HpaI GTTAAC 1 cut(s) 997
HphI GGTGA 7 cut(s) 55, 155, 191, 295, 1663, 1691, 1820
Hpy166II GTNNAC 6 cut(s) 95, 122, 903, 958, 997, 1873
Hpy8I GTNNAC 6 cut(s) 95, 122, 903, 958, 997, 1873
Hpy99I CGWCG 4 cut(s) 160, 795, 962, 1331
HpyAV CCTTC 4 cut(s) 499, 1325, 1820, 1983
HpyCH4III ACNGT 4 cut(s) 229, 1001, 1774, 1981
HpyCH4IV ACGT 3 cut(s) 97, 1686, 2472
HpyCH4V TGCA 7 cut(s) 538, 1103, 1305, 1430, 1513, 1883, 2354
HpySE526I ACGT 3 cut(s) 97, 1686, 2472
Hsp92I GRCGYC 3 cut(s) 97, 1478, 1907
Hsp92II CATG 7 cut(s) 82, 927, 1019, 1051, 1268, 1565, 2266
HspAI GCGC 5 cut(s) 484, 795, 1087, 1478, 1907
KasI GGCGCC 2 cut(s) 1477, 1906
KspAI GTTAAC 1 cut(s) 997
LguI GCTCTTC 2 cut(s) 168, 1428
LmnI GCTCC 4 cut(s) 238, 643, 1191, 1558
Lsp1109I GCAGC 4 cut(s) 522, 1087, 1115, 2371
LweI GCATC 5 cut(s) 14, 1153, 1469, 1516, 2176
MaeI CTAG 4 cut(s) 359, 711, 1451, 1637
MaeII ACGT 3 cut(s) 97, 1686, 2472
MaeIII GTNAC 2 cut(s) 1679, 1963
MflI RGATCY 4 cut(s) 519, 1273, 1756, 2017
MhlI GDGCHC 3 cut(s) 640, 778, 849
MluCI AATT 4 cut(s) 875, 2105, 2159, 2492
Mly113I GGCGCC 2 cut(s) 1478, 1907
MlyI GAGTC 7 cut(s) 904, 1237, 1265, 1544, 2061, 2089, 2114
MmeI TCCRAC 2 cut(s) 669, 1938
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 2 cut(s) 996, 2243
MslI CAYNNNNRTG 2 cut(s) 564, 2261
MspA1I CMGCKG 1 cut(s) 753
MspR9I CCNGG 9 cut(s) 67, 177, 782, 1059, 1149, 1189, 2081, 2177, 2411
Mva1269I GAATGC 2 cut(s) 1368, 2347
MvaI CCWGG 9 cut(s) 67, 177, 782, 1059, 1149, 1189, 2081, 2177, 2411
MvnI CGCG 6 cut(s) 564, 795, 1074, 2050, 2168, 2235
NarI GGCGCC 2 cut(s) 1478, 1907
NcoI CCATGG 1 cut(s) 923
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 7 cut(s) 82, 927, 1019, 1051, 1268, 1565, 2266
NmuCI GTSAC 1 cut(s) 1679
NruI TCGCGA 1 cut(s) 564
PaeR7I CTCGAG 2 cut(s) 1710, 2214
PagI TCATGA 1 cut(s) 1264
PaqCI CACCTGC 1 cut(s) 160
PceI AGGCCT 1 cut(s) 1666
PciSI GCTCTTC 2 cut(s) 168, 1428
PcsI WCGNNNNNNNCGW 3 cut(s) 94, 957, 1026
PctI GAATGC 2 cut(s) 1368, 2347
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 7 cut(s) 593, 916, 1078, 1624, 1718, 1811, 1935
PflMI CCANNNNNTGG 1 cut(s) 471
PleI GAGTC 7 cut(s) 903, 1237, 1264, 1544, 2060, 2089, 2114
PluTI GGCGCC 2 cut(s) 1481, 1910
PmaCI CACGTG 1 cut(s) 2473
PmlI CACGTG 1 cut(s) 2473
PpsI GAGTC 7 cut(s) 903, 1237, 1264, 1544, 2060, 2089, 2114
Ppu21I YACGTR 2 cut(s) 1687, 2473
PpuMI RGGWCCY 2 cut(s) 1517, 2311
Psp124BI GAGCTC 2 cut(s) 640, 849
Psp5II RGGWCCY 2 cut(s) 1517, 2311
Psp6I CCWGG 9 cut(s) 65, 175, 780, 1057, 1147, 1187, 2079, 2175, 2409
PspCI CACGTG 1 cut(s) 2473
PspEI GGTNACC 1 cut(s) 1679
PspFI CCCAGC 1 cut(s) 749
PspGI CCWGG 9 cut(s) 65, 175, 780, 1057, 1147, 1187, 2079, 2175, 2409
PspPPI RGGWCCY 2 cut(s) 1517, 2311
PsrI GAACNNNNNNTAC 2 cut(s) 1045, 1077
PstI CTGCAG 3 cut(s) 540, 1105, 1432
PstNI CAGNNNCTG 1 cut(s) 1427
PsuI RGATCY 4 cut(s) 519, 1273, 1756, 2017
RruI TCGCGA 1 cut(s) 564
RsaI GTAC 4 cut(s) 671, 941, 1689, 1729
RsaNI GTAC 4 cut(s) 670, 940, 1688, 1728
RseI CAYNNNNRTG 2 cut(s) 564, 2261
SacI GAGCTC 2 cut(s) 640, 849
SalI GTCGAC 2 cut(s) 120, 956
SapI GCTCTTC 2 cut(s) 168, 1428
SaqAI TTAA 2 cut(s) 996, 2243
SchI GAGTC 7 cut(s) 904, 1237, 1265, 1544, 2061, 2089, 2114
ScrFI CCNGG 9 cut(s) 67, 177, 782, 1059, 1149, 1189, 2081, 2177, 2411
SduI GDGCHC 3 cut(s) 640, 778, 849
SfaNI GCATC 5 cut(s) 14, 1153, 1469, 1516, 2176
SfcI CTRYAG 4 cut(s) 536, 1101, 1428, 1500
SfiI GGCCNNNNNGGCC 1 cut(s) 2438
SfoI GGCGCC 2 cut(s) 1479, 1908
Sfr274I CTCGAG 2 cut(s) 1710, 2214
SinI GGWCC 8 cut(s) 197, 262, 691, 1372, 1383, 1517, 1642, 2311
SlaI CTCGAG 2 cut(s) 1710, 2214
SmiMI CAYNNNNRTG 2 cut(s) 564, 2261
SmlI CTYRAG 5 cut(s) 1082, 1710, 2181, 2190, 2214
SmoI CTYRAG 5 cut(s) 1082, 1710, 2181, 2190, 2214
Sse9I AATT 4 cut(s) 875, 2105, 2159, 2492
SseBI AGGCCT 1 cut(s) 1666
SspDI GGCGCC 2 cut(s) 1477, 1906
SspI AATATT 1 cut(s) 1696
SspMI CTAG 4 cut(s) 359, 711, 1451, 1637
SstI GAGCTC 2 cut(s) 640, 849
StuI AGGCCT 1 cut(s) 1666
StyD4I CCNGG 9 cut(s) 65, 175, 780, 1057, 1147, 1187, 2079, 2175, 2409
StyI CCWWGG 4 cut(s) 200, 923, 1554, 1645
TaaI ACNGT 4 cut(s) 229, 1001, 1774, 1981
TaiI ACGT 3 cut(s) 100, 1689, 2475
TasI AATT 4 cut(s) 875, 2105, 2159, 2492
TatI WGTACW 1 cut(s) 669
TauI GCSGC 8 cut(s) 365, 368, 1598, 1823, 1918, 2168, 2406, 2462
TfiI GAWTC 7 cut(s) 593, 916, 1078, 1624, 1718, 1811, 1935
Tru1I TTAA 2 cut(s) 996, 2243
Tru9I TTAA 2 cut(s) 996, 2243
TscAI CASTG 4 cut(s) 52, 1294, 1393, 1756
TseFI GTSAC 1 cut(s) 1679
TseI GCWGC 4 cut(s) 535, 1100, 1103, 2384
Tsp45I GTSAC 1 cut(s) 1679
TspDTI ATGAA 8 cut(s) 54, 1284, 1578, 1866, 2148, 2262, 2291, 2388
TspGWI ACGGA 3 cut(s) 982, 1315, 1364
TspRI CASTG 4 cut(s) 52, 1294, 1393, 1756
Van91I CCANNNNNTGG 1 cut(s) 471
VpaK11BI GGWCC 8 cut(s) 197, 262, 691, 1372, 1383, 1517, 1642, 2311
XagI CCTNNNNNAGG 1 cut(s) 1406
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XhoI CTCGAG 2 cut(s) 1710, 2214
XmiI GTMKAC 3 cut(s) 94, 121, 957
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 4 cut(s) 359, 711, 1451, 1637
ZraI GACGTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.