Rmu_sc0001817.1_g000004

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001817.1
OG0000214
Physical Location & Seq
Reverse (-)
24510 .. 27678
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001817.1_g000004.1.cds

Sequence Viewer

Length: 2739 bp
atggcacccaagaaaaataagcccatcgatgaaccagatgagatcaacgagaatgccgcctttacctggcataccaatatgggcatgctatgcctacgcgagactggtgtggagagacaccgcctgatgggttttggcgaaaacggtaatcaatggagcttgggtcctacttcgaaagatccgttgccagatgatgccttggcctactattcacttccagtccgtcgacccatcgctgctcttggacggatgccaggtgattttagcagttggggaccgaggagaaaagtgggtttctgggctattgtccccgccgaggatagaacttggtacgaggaggttcgagcgagagatctgtctcgttgggaagcgatttgggcaaatgagcataactttgctgcacatccttactatcacgggattgcccatcgattggccccctatgagcatggccaatttgacgcaattaagttcacaacgcacatggaccaaaccaaccggacacactacagcaaatcctacccgacgtggcgagactactaccgcaaaaagcacgacgagaccggagggattgccttccttgagttttggctatgtaagttcgttttctgtacctcttctggtaaaactactggtacttggagccctctggccactgctctttacaatggcatctgcgttggccttgggcaaccggtgttgggtacgctgtatcgctccctttacaccgccgtgatgcgcccttttgacaccgatatcagcggccctttctggatcctcgccttctggctacaaacctattttccttgcttccgccgcggcgatattcctgaagatccaccagttgactcccttctggggaattggttctgtctcgatgcaaagtaccgcgctcccccttactccgagtgcttcactcacttgtacctgatgctagagatgctggacccgaccatagtcctttctaggcggtatccctctcctcttgaggatggtttcctcccccgtggaagggatcacagcgagcgagcacttgaagcttttcgtcgagccatctcctgtagggacttccgccttgttgatgaaaatatatgctacgagctctatgccccaaatcattttgctcgccaacttgggctggctgaactggtaccttggcctctgcttcagtctgccaaccattacacctcttggcggagatccggcctgcctgggtccccccctttccagagtccgtttactttggtggcagtccctgaccgggttaggacgatgtaccccgccaatgacgtcggcgatgattatgtgggttggtggaaagaaatattggtgaattgctgggacttcccgcatgacgaactcttcgctttgatcttccgctgcttaagtagtcttcgcgctgtggacctcgagattattgaccgcttccctgatcctgcagaacaaccggaacaacccccgcgacttgctctgcttgctcgacgaccacaaccagggattcaaattggcgagccaggtgcgatacaacccaaccggagtggtactgttccgccgccacttggcggtgatcggactggctcttcagccgcggcctctgttcaggctggcaggcaaaaggcggtagccgaggagtctcttgaagtggagtcctcatacgatgatgatgaaagcctcactgaggctcttgctcgtaagcgcagtcgcgcccaattcactgaagaggactttgaggatgaccagcccctgtcgatgcgactggttcgtcgaagggtcgttggtccctctcatgtgaatgaggctgggtcttcagccgctgcatcgggctcagcgccggcgatctctccaacgccaatcagctttgcagagccacttccggctcccccaaccggagaacaaacgcgaggtccttctcctccaataaccatctccgacgatgattctccggatcataacagcggggaaagccactctgaggcttctgctgcctacagggagttggtggaaaccgagattcctgcggccatagaggcccaagagaatactgaagcgaggcgtcttccttctaatgtccctattccagataccgaagcggcaacccgagaggagtcagttcataccgaggaggtggtcattgatcctgaagatctcgccggtgggatgaacgtcccagacttggacgaagcgattagtgatgttggacctttgatcccggaaactgcctcggctaacattgacgccagcggctctgtccccggagttgcttgcccccaaaactccaccggtgaaactcgcgctgcagttccagagcctccggcggtggggatgccaaaccaagttcaggaggttgttaccggggctgtgggtgaagatgaaagaattgaggaacccatcagccctcttgcaatagtggtctatgatcgtgctgcaaatcccccgccacctcctcctactaggcttgagagacttgctcgggctcttgcggaaaatcctcctaccgctactgaactagccagggcggagcttcgaagtcttctgggacagtggcggttgggacctgcagaactagccagggtccgggaggccattgtgttcctccgtcgagagcgtgcggtccagccggttcgactcgaagttatagagaagctgttgggggaattcgaggtggcttgcgctcgtcaatccactgcggaagctcgagctcgtacgatccgcagggcccataataaccttaccaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

912

Amino Acids

101.45

Weight (kDa)

5.1

Isoelectric Point (pI)

56.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1761
AatII GACGTC 1 cut(s) 1293
Acc36I ACCTGC 1 cut(s) 2563
Acc65I GGTACC 1 cut(s) 1150
AccB1I GGYRCC 2 cut(s) 4, 1150
AccB7I CCANNNNNTGG 1 cut(s) 433
AccI GTMKAC 1 cut(s) 226
AccII CGCG 9 cut(s) 99, 819, 891, 1398, 1462, 1589, 1704, 1900, 2292
AccIII TCCGGA 1 cut(s) 1942
AcoI YGGCCR 3 cut(s) 451, 651, 2019
AcsI RAATTY 1 cut(s) 2654
AcuI CTGAAG 7 cut(s) 852, 1151, 1566, 1737, 1791, 2064, 2160
AcyI GRCGYC 3 cut(s) 1290, 2053, 2235
AflII CTTAAG 1 cut(s) 1384
AgeI ACCGGT 2 cut(s) 694, 2279
AgsI TTSAA 3 cut(s) 1037, 1502, 1640
AjiI CACGTC 1 cut(s) 528
AjnI CCWGG 7 cut(s) 65, 253, 1210, 1492, 1513, 2510, 2567
AjuI GAANNNNNNNTTGG 2 cut(s) 1310, 1342
AleI CACNNNNGTG 1 cut(s) 731
AluBI AGCT 8 cut(s) 159, 1040, 1102, 1857, 2521, 2644, 2693, 2699
AluI AGCT 8 cut(s) 159, 1040, 1102, 1857, 2521, 2644, 2693, 2699
Alw21I GWGCWC 3 cut(s) 1033, 1104, 2701
Alw26I GTCTC 8 cut(s) 95, 109, 363, 528, 554, 878, 1638, 2455
AlwNI CAGNNNCTG 3 cut(s) 1256, 1744, 1814
Ama87I CYCGRG 4 cut(s) 1409, 2097, 2469, 2694
Aor13HI TCCGGA 1 cut(s) 1942
ApaI GGGCCC 1 cut(s) 2719
ApeKI GCWGC 7 cut(s) 236, 398, 1380, 1814, 1982, 2294, 2423
ApoI RAATTY 1 cut(s) 2654
ArsI GACNNNNNNTTYG 4 cut(s) 1346, 1378, 1888, 1920
AsiGI ACCGGT 2 cut(s) 694, 2279
Asp700I GAANNNNTTC 2 cut(s) 866, 1041
Asp718I GGTACC 1 cut(s) 1150
AspLEI GCGC 8 cut(s) 741, 893, 1400, 1698, 1706, 1831, 2294, 2672
AsuC2I CCSGG 5 cut(s) 1262, 2210, 2253, 2353, 2576
AsuHPI GGTGA 5 cut(s) 269, 1342, 1577, 2294, 2375
AsuII TTCGAA 2 cut(s) 173, 2524
AvaI CYCGRG 4 cut(s) 1409, 2097, 2469, 2694
BaeGI GKGCMC 1 cut(s) 2719
BalI TGGCCA 2 cut(s) 453, 653
BamHI GGATCC 1 cut(s) 774
BanI GGYRCC 2 cut(s) 4, 1150
BanII GRGCYC 6 cut(s) 647, 1104, 1826, 2476, 2701, 2719
BbsI GAAGAC 4 cut(s) 1385, 1797, 2048, 2522
Bbv12I GWGCWC 3 cut(s) 1033, 1104, 2701
BbvI GCAGC 7 cut(s) 223, 385, 1367, 1801, 1969, 2281, 2410
BccI CCATC 8 cut(s) 32, 121, 239, 435, 986, 1061, 1931, 2396
BceAI ACGGC 1 cut(s) 716
BcgI CGANNNNNNTGC 6 cut(s) 1088, 1122, 1499, 1533, 1997, 2031
BciT130I CCWGG 7 cut(s) 67, 255, 1212, 1494, 1515, 2512, 2569
BciVI GTATCC 1 cut(s) 984
BcnI CCSGG 5 cut(s) 1262, 2210, 2253, 2353, 2576
BcoDI GTCTC 8 cut(s) 95, 109, 363, 528, 554, 878, 1638, 2455
BfaI CTAG 5 cut(s) 935, 966, 2451, 2507, 2564
BfmI CTRYAG 6 cut(s) 508, 1060, 1437, 1987, 2295, 2556
BfoI RGCGCY 1 cut(s) 1832
BfrI CTTAAG 1 cut(s) 1384
BfuAI ACCTGC 1 cut(s) 2563
BfuI GTATCC 1 cut(s) 984
BglI GCCNNNNNGGC 1 cut(s) 2027
BglII AGATCT 2 cut(s) 352, 2143
BlpI GCTNAGC 1 cut(s) 1825
BmeT110I CYCGRG 4 cut(s) 1409, 2097, 2469, 2694
BmgBI CACGTC 1 cut(s) 528
BoxI GACNNNNGTC 1 cut(s) 956
BpiI GAAGAC 4 cut(s) 1385, 1797, 2048, 2522
BplI GAGNNNNNCTC 2 cut(s) 2452, 2484
Bpu1102I GCTNAGC 1 cut(s) 1825
Bpu14I TTCGAA 2 cut(s) 173, 2524
BpuEI CTTGAG 3 cut(s) 602, 1007, 2477
BpuMI CCSGG 5 cut(s) 1262, 2210, 2253, 2353, 2576
Bsa29I ATCGAT 2 cut(s) 27, 430
BsaHI GRCGYC 3 cut(s) 1290, 2053, 2235
BsaI GGTCTC 1 cut(s) 554
BsaWI WCCGGW 8 cut(s) 498, 563, 694, 1447, 1533, 1886, 1942, 2279
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bse118I RCCGGY 5 cut(s) 694, 1831, 2150, 2279, 2617
Bse1I ACTGG 7 cut(s) 109, 218, 637, 842, 1152, 1579, 1761
BseAI TCCGGA 1 cut(s) 1942
BseBI CCWGG 7 cut(s) 67, 255, 1212, 1494, 1515, 2512, 2569
BseCI ATCGAT 2 cut(s) 27, 430
BseGI GGATG 6 cut(s) 255, 403, 997, 1738, 2163, 2328
BseMII CTCAG 3 cut(s) 1668, 1839, 1962
BseNI ACTGG 7 cut(s) 109, 218, 637, 842, 1152, 1579, 1761
BseRI GAGGAG 8 cut(s) 295, 350, 972, 1643, 1902, 2117, 2135, 2433
BseSI GKGCMC 1 cut(s) 2719
BseXI GCAGC 7 cut(s) 223, 385, 1367, 1801, 1969, 2281, 2410
BseYI CCCAGC 2 cut(s) 1338, 1799
BsgI GTGCAG 1 cut(s) 384
Bsh1236I CGCG 9 cut(s) 99, 819, 891, 1398, 1462, 1589, 1704, 1900, 2292
BshNI GGYRCC 2 cut(s) 4, 1150
BshTI ACCGGT 2 cut(s) 694, 2279
BshVI ATCGAT 2 cut(s) 27, 430
BsiHKAI GWGCWC 3 cut(s) 1033, 1104, 2701
BsiHKCI CYCGRG 4 cut(s) 1409, 2097, 2469, 2694
BsiWI CGTACG 1 cut(s) 2702
BsmAI GTCTC 8 cut(s) 95, 109, 363, 528, 554, 878, 1638, 2455
BsmI GAATGC 1 cut(s) 58
Bso31I GGTCTC 1 cut(s) 554
BsoBI CYCGRG 4 cut(s) 1409, 2097, 2469, 2694
Bsp119I TTCGAA 2 cut(s) 173, 2524
Bsp120I GGGCCC 1 cut(s) 2715
Bsp1286I GDGCHC 7 cut(s) 647, 1033, 1104, 1826, 2476, 2701, 2719
Bsp13I TCCGGA 1 cut(s) 1942
Bsp1720I GCTNAGC 1 cut(s) 1825
BspCNI CTCAG 3 cut(s) 1669, 1838, 1963
BspDI ATCGAT 2 cut(s) 27, 430
BspEI TCCGGA 1 cut(s) 1942
BspFNI CGCG 9 cut(s) 99, 819, 891, 1398, 1462, 1589, 1704, 1900, 2292
BspMAI CTGCAG 3 cut(s) 1441, 2299, 2560
BspMI ACCTGC 1 cut(s) 2563
BspQI GCTCTTC 1 cut(s) 1585
BspT104I TTCGAA 2 cut(s) 173, 2524
BspT107I GGYRCC 2 cut(s) 4, 1150
BspTI CTTAAG 1 cut(s) 1384
BspTNI GGTCTC 1 cut(s) 554
BsrFI RCCGGY 5 cut(s) 694, 1831, 2150, 2279, 2617
BsrI ACTGG 7 cut(s) 109, 218, 637, 842, 1152, 1579, 1761
BssAI RCCGGY 5 cut(s) 694, 1831, 2150, 2279, 2617
BssNI GRCGYC 3 cut(s) 1290, 2053, 2235
BssT1I CCWWGG 3 cut(s) 198, 685, 1154
Bst2UI CCWGG 7 cut(s) 67, 255, 1212, 1494, 1515, 2512, 2569
Bst4CI ACNGT 3 cut(s) 146, 1546, 2541
Bst6I CTCTTC 4 cut(s) 622, 1367, 1585, 1713
BstACI GRCGYC 3 cut(s) 1290, 2053, 2235
BstAFI CTTAAG 1 cut(s) 1384
BstAPI GCANNNNNTGC 1 cut(s) 90
BstBI TTCGAA 2 cut(s) 173, 2524
BstDEI CTNAG 3 cut(s) 1677, 1825, 1971
BstDSI CCRYGG 3 cut(s) 817, 1006, 1587
BstENI CCTNNNNNAGG 1 cut(s) 1676
BstF5I GGATG 6 cut(s) 255, 403, 997, 1738, 2163, 2328
BstFNI CGCG 9 cut(s) 99, 819, 891, 1398, 1462, 1589, 1704, 1900, 2292
BstH2I RGCGCY 1 cut(s) 1832
BstHHI GCGC 8 cut(s) 741, 893, 1400, 1698, 1706, 1831, 2294, 2672
BstMAI GTCTC 8 cut(s) 95, 109, 363, 528, 554, 878, 1638, 2455
BstNI CCWGG 7 cut(s) 67, 255, 1212, 1494, 1515, 2512, 2569
BstNSI RCATGY 1 cut(s) 88
BstPAI GACNNNNGTC 1 cut(s) 956
BstSFI CTRYAG 6 cut(s) 508, 1060, 1437, 1987, 2295, 2556
BstSLI GKGCMC 1 cut(s) 2719
BstUI CGCG 9 cut(s) 99, 819, 891, 1398, 1462, 1589, 1704, 1900, 2292
BstV1I GCAGC 7 cut(s) 223, 385, 1367, 1801, 1969, 2281, 2410
BstV2I GAAGAC 4 cut(s) 1385, 1797, 2048, 2522
BstX2I RGATCY 6 cut(s) 178, 352, 774, 835, 1199, 2143
BstYI RGATCY 6 cut(s) 178, 352, 774, 835, 1199, 2143
Bsu15I ATCGAT 2 cut(s) 27, 430
BsuI GTATCC 1 cut(s) 984
BsuTUI ATCGAT 2 cut(s) 27, 430
BtgI CCRYGG 3 cut(s) 817, 1006, 1587
BtgZI GCGATG 2 cut(s) 217, 1311
BtrI CACGTC 1 cut(s) 528
BtsCI GGATG 6 cut(s) 255, 403, 997, 1738, 2163, 2328
BtsI GCAGTG 2 cut(s) 654, 2682
BtsIMutI CAGTG 5 cut(s) 654, 1674, 1713, 2546, 2682
BveI ACCTGC 1 cut(s) 2563
CaiI CAGNNNCTG 3 cut(s) 1256, 1744, 1814
CfoI GCGC 8 cut(s) 741, 893, 1400, 1698, 1706, 1831, 2294, 2672
Cfr10I RCCGGY 5 cut(s) 694, 1831, 2150, 2279, 2617
Cfr42I CCGCGG 2 cut(s) 820, 1590
ClaI ATCGAT 2 cut(s) 27, 430
CseI GACGC 3 cut(s) 470, 2042, 2243
CspAI ACCGGT 2 cut(s) 694, 2279
CspCI CAANNNNNGTGG 2 cut(s) 1519, 1554
CviAII CATG 5 cut(s) 85, 449, 484, 1352, 1787
DdeI CTNAG 3 cut(s) 1677, 1825, 1971
DrdI GACNNNNNNGTC 1 cut(s) 1761
DseDI GACNNNNNNGTC 1 cut(s) 1761
EaeI YGGCCR 3 cut(s) 451, 651, 2019
Eam1104I CTCTTC 4 cut(s) 622, 1367, 1585, 1713
EarI CTCTTC 4 cut(s) 622, 1367, 1585, 1713
EciI GGCGGA 5 cut(s) 803, 1061, 1210, 1539, 2531
Ecl136II GAGCTC 2 cut(s) 1102, 2699
Eco130I CCWWGG 3 cut(s) 198, 685, 1154
Eco24I GRGCYC 6 cut(s) 647, 1104, 1826, 2476, 2701, 2719
Eco31I GGTCTC 1 cut(s) 554
Eco32I GATATC 1 cut(s) 757
Eco53kI GAGCTC 2 cut(s) 1102, 2699
Eco57I CTGAAG 7 cut(s) 852, 1151, 1566, 1737, 1791, 2064, 2160
Eco88I CYCGRG 4 cut(s) 1409, 2097, 2469, 2694
EcoICRI GAGCTC 2 cut(s) 1102, 2699
EcoNI CCTNNNNNAGG 1 cut(s) 1676
EcoO109I RGGNCCY 5 cut(s) 164, 1215, 1904, 2552, 2715
EcoRI GAATTC 1 cut(s) 2654
EcoRII CCWGG 7 cut(s) 65, 253, 1210, 1492, 1513, 2510, 2567
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 3 cut(s) 198, 685, 1154
EcoT38I GRGCYC 6 cut(s) 647, 1104, 1826, 2476, 2701, 2719
ErhI CCWWGG 3 cut(s) 198, 685, 1154
FaeI CATG 5 cut(s) 88, 452, 487, 1355, 1790
FatI CATG 5 cut(s) 84, 448, 483, 1351, 1786
FauI CCCGC 6 cut(s) 319, 1288, 1356, 1467, 1949, 2442
FblI GTMKAC 1 cut(s) 226
FokI GGATG 6 cut(s) 262, 390, 1004, 1745, 2170, 2335
FriOI GRGCYC 6 cut(s) 647, 1104, 1826, 2476, 2701, 2719
FspBI CTAG 5 cut(s) 935, 966, 2451, 2507, 2564
GlaI GCGC 8 cut(s) 740, 892, 1399, 1697, 1705, 1830, 2293, 2671
GsaI CCCAGC 2 cut(s) 1342, 1803
HaeII RGCGCY 1 cut(s) 1832
HgaI GACGC 3 cut(s) 470, 2042, 2243
HhaI GCGC 8 cut(s) 741, 893, 1400, 1698, 1706, 1831, 2294, 2672
Hin1I GRCGYC 3 cut(s) 1290, 2053, 2235
Hin1II CATG 5 cut(s) 88, 452, 487, 1355, 1790
Hin6I GCGC 8 cut(s) 739, 891, 1398, 1696, 1704, 1829, 2292, 2670
HinP1I GCGC 8 cut(s) 739, 891, 1398, 1696, 1704, 1829, 2292, 2670
HincII GTYRAC 2 cut(s) 227, 847
HindII GTYRAC 2 cut(s) 227, 847
HindIII AAGCTT 1 cut(s) 1038
HinfI GANTC 9 cut(s) 848, 1231, 1498, 1631, 1646, 1937, 2011, 2105, 2625
HphI GGTGA 5 cut(s) 269, 1342, 1577, 2294, 2375
Hpy166II GTNNAC 5 cut(s) 227, 474, 847, 1239, 1405
Hpy188I TCNGA 4 cut(s) 907, 1572, 1930, 1972
Hpy8I GTNNAC 5 cut(s) 227, 474, 847, 1239, 1405
Hpy99I CGWCG 9 cut(s) 228, 529, 560, 1050, 1295, 1485, 1767, 1934, 2601
HpyAV CCTTC 7 cut(s) 586, 793, 863, 1005, 1761, 1917, 2070
HpyCH4III ACNGT 3 cut(s) 146, 1546, 2541
HpyCH4IV ACGT 3 cut(s) 527, 1290, 2163
HpyCH4V TGCA 9 cut(s) 401, 881, 1439, 1817, 1862, 2297, 2402, 2426, 2558
HpyF3I CTNAG 3 cut(s) 1677, 1825, 1971
HpySE526I ACGT 3 cut(s) 527, 1290, 2163
Hsp92I GRCGYC 3 cut(s) 1290, 2053, 2235
Hsp92II CATG 5 cut(s) 88, 452, 487, 1355, 1790
HspAI GCGC 8 cut(s) 739, 891, 1398, 1696, 1704, 1829, 2292, 2670
KflI GGGWCCC 1 cut(s) 1215
Kpn2I TCCGGA 1 cut(s) 1942
KpnI GGTACC 1 cut(s) 1154
KroI GCCGGC 1 cut(s) 1831
KroNI GCCGGC 1 cut(s) 1833
KspI CCGCGG 2 cut(s) 820, 1590
LguI GCTCTTC 1 cut(s) 1585
LmnI GCTCC 6 cut(s) 156, 642, 722, 898, 1882, 2518
Lsp1109I GCAGC 7 cut(s) 223, 385, 1367, 1801, 1969, 2281, 2410
MaeI CTAG 5 cut(s) 935, 966, 2451, 2507, 2564
MaeII ACGT 3 cut(s) 527, 1290, 2163
MaeIII GTNAC 1 cut(s) 2347
MflI RGATCY 6 cut(s) 178, 352, 774, 835, 1199, 2143
MhlI GDGCHC 7 cut(s) 647, 1033, 1104, 1826, 2476, 2701, 2719
MlsI TGGCCA 2 cut(s) 453, 653
MluCI AATT 9 cut(s) 455, 465, 862, 1333, 1503, 1709, 2376, 2654, 2734
MluNI TGGCCA 2 cut(s) 453, 653
MlyI GAGTC 6 cut(s) 842, 1240, 1640, 1655, 2114, 2619
MmeI TCCRAC 3 cut(s) 1868, 1953, 2176
Mox20I TGGCCA 2 cut(s) 453, 653
MreI CGCCGGCG 1 cut(s) 1831
MroI TCCGGA 1 cut(s) 1942
MroNI GCCGGC 1 cut(s) 1831
MroXI GAANNNNTTC 2 cut(s) 866, 1041
MscI TGGCCA 2 cut(s) 453, 653
MseI TTAA 2 cut(s) 468, 1385
MslI CAYNNNNRTG 2 cut(s) 731, 1791
Msp20I TGGCCA 2 cut(s) 453, 653
MspA1I CMGCKG 7 cut(s) 762, 819, 1380, 1589, 1814, 1956, 2241
MspCI CTTAAG 1 cut(s) 1384
Mva1269I GAATGC 1 cut(s) 58
MvaI CCWGG 7 cut(s) 67, 255, 1212, 1494, 1515, 2512, 2569
MvnI CGCG 9 cut(s) 99, 819, 891, 1398, 1462, 1589, 1704, 1900, 2292
NaeI GCCGGC 1 cut(s) 1833
NciI CCSGG 5 cut(s) 1262, 2210, 2253, 2353, 2576
NgoMIV GCCGGC 1 cut(s) 1831
NlaIII CATG 5 cut(s) 88, 452, 487, 1355, 1790
NmeAIII GCCGAG 3 cut(s) 340, 1651, 2201
NspI RCATGY 1 cut(s) 88
NspV TTCGAA 2 cut(s) 173, 2524
OliI CACNNNNGTG 1 cut(s) 731
PaeI GCATGC 1 cut(s) 88
PaeR7I CTCGAG 2 cut(s) 1409, 2694
PciSI GCTCTTC 1 cut(s) 1585
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PctI GAATGC 1 cut(s) 58
PdiI GCCGGC 1 cut(s) 1833
PdmI GAANNNNTTC 2 cut(s) 866, 1041
PfeI GAWTC 3 cut(s) 1498, 1937, 2011
Pfl23II CGTACG 1 cut(s) 2702
PflMI CCANNNNNTGG 1 cut(s) 433
PfoI TCCNGGA 2 cut(s) 2208, 2574
PinAI ACCGGT 2 cut(s) 694, 2279
PleI GAGTC 6 cut(s) 842, 1239, 1639, 1654, 2113, 2619
PpsI GAGTC 6 cut(s) 842, 1239, 1639, 1654, 2113, 2619
PpuMI RGGWCCY 4 cut(s) 164, 1215, 1904, 2552
PshAI GACNNNNGTC 1 cut(s) 956
Psp124BI GAGCTC 2 cut(s) 1104, 2701
Psp5II RGGWCCY 4 cut(s) 164, 1215, 1904, 2552
Psp6I CCWGG 7 cut(s) 65, 253, 1210, 1492, 1513, 2510, 2567
PspFI CCCAGC 2 cut(s) 1338, 1799
PspGI CCWGG 7 cut(s) 65, 253, 1210, 1492, 1513, 2510, 2567
PspLI CGTACG 1 cut(s) 2702
PspOMI GGGCCC 1 cut(s) 2715
PspPPI RGGWCCY 4 cut(s) 164, 1215, 1904, 2552
PspXI VCTCGAGB 1 cut(s) 2694
PstI CTGCAG 3 cut(s) 1441, 2299, 2560
PstNI CAGNNNCTG 3 cut(s) 1256, 1744, 1814
PsuI RGATCY 6 cut(s) 178, 352, 774, 835, 1199, 2143
RseI CAYNNNNRTG 2 cut(s) 731, 1791
SacI GAGCTC 2 cut(s) 1104, 2701
SacII CCGCGG 2 cut(s) 820, 1590
SalI GTCGAC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 1585
SaqAI TTAA 2 cut(s) 468, 1385
SchI GAGTC 6 cut(s) 842, 1240, 1640, 1655, 2114, 2619
SduI GDGCHC 7 cut(s) 647, 1033, 1104, 1826, 2476, 2701, 2719
SfcI CTRYAG 6 cut(s) 508, 1060, 1437, 1987, 2295, 2556
SfiI GGCCNNNNNGGCC 1 cut(s) 2027
Sfr274I CTCGAG 2 cut(s) 1409, 2694
Sfr303I CCGCGG 2 cut(s) 820, 1590
SfuI TTCGAA 2 cut(s) 173, 2524
SgrAI CRCCGGYG 3 cut(s) 1831, 2150, 2279
SgrBI CCGCGG 2 cut(s) 820, 1590
SlaI CTCGAG 2 cut(s) 1409, 2694
SmiMI CAYNNNNRTG 2 cut(s) 731, 1791
SmlI CTYRAG 6 cut(s) 581, 986, 1384, 1409, 2456, 2694
SmoI CTYRAG 6 cut(s) 581, 986, 1384, 1409, 2456, 2694
SphI GCATGC 1 cut(s) 88
Sse9I AATT 9 cut(s) 455, 465, 862, 1333, 1503, 1709, 2376, 2654, 2734
SspI AATATT 1 cut(s) 1326
SspMI CTAG 5 cut(s) 935, 966, 2451, 2507, 2564
SstI GAGCTC 2 cut(s) 1104, 2701
StyI CCWWGG 3 cut(s) 198, 685, 1154
TaaI ACNGT 3 cut(s) 146, 1546, 2541
TaiI ACGT 3 cut(s) 530, 1293, 2166
TaqII GACCGA 1 cut(s) 292
TasI AATT 9 cut(s) 455, 465, 862, 1333, 1503, 1709, 2376, 2654, 2734
TfiI GAWTC 3 cut(s) 1498, 1937, 2011
Tru1I TTAA 2 cut(s) 468, 1385
Tru9I TTAA 2 cut(s) 468, 1385
TscAI CASTG 5 cut(s) 661, 1681, 1720, 2546, 2689
TseI GCWGC 7 cut(s) 236, 398, 1380, 1814, 1982, 2294, 2423
TspDTI ATGAA 6 cut(s) 45, 1098, 1680, 2102, 2174, 2385
TspGWI ACGGA 5 cut(s) 171, 212, 262, 1224, 2585
TspRI CASTG 5 cut(s) 661, 1681, 1720, 2546, 2689
Van91I CCANNNNNTGG 1 cut(s) 433
Vha464I CTTAAG 1 cut(s) 1384
XagI CCTNNNNNAGG 1 cut(s) 1676
XapI RAATTY 1 cut(s) 2654
XceI RCATGY 1 cut(s) 88
XhoI CTCGAG 2 cut(s) 1409, 2694
XmiI GTMKAC 1 cut(s) 226
XmnI GAANNNNTTC 2 cut(s) 866, 1041
XspI CTAG 5 cut(s) 935, 966, 2451, 2507, 2564
ZraI GACGTC 1 cut(s) 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.