Rroxscaffold_7G00180540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000214
Physical Location & Seq
Reverse (-)
19904313 .. 19904856
544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180540.1

Sequence Viewer

Length: 423 bp
ATGGGCTTTGGTGGCGGTGATAGTCAAGCGAGTTTGGGTCCCACACCTCGCGATCGTTTGCCGGATGATGCTATGGCCTATTATGGGCTTCCCATCCGTCGTCCCATAGCGGCTCTTGGGCAGGTGCTCGGTGATTTTAGCAGTTGGGGACCAAGGAGGAAAGTGGGCTTCGGCCTACTTGTCACTCCCGAGGAAAAGGTTTGGTATCGGGAGGTCCGAGCGAGAGATTTGGCCCGATGGGATGTGGCGGATGAGCATAACTCGCCGGATGTTCTTACCATCACGGGGTTGCCCATTGACTTTGACCCCTATGTGCATGGTCGGTTTGATGGCATTCAATTTTCTTTGAGAATGGATATGGCTGGTCGAGGGCATCACGGAAATCCTACCCATTACGCGCGACTATTACTGCACCTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.6

Weight (kDa)

6.58

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccII CGCG 3 cut(s) 51, 398, 400
AciI CCGC 3 cut(s) 15, 110, 248
AfiI CCNNNNNNNGG 2 cut(s) 84, 285
AgsI TTSAA 1 cut(s) 338
Alw21I GWGCWC 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 3 cut(s) 75, 172, 231
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 4 cut(s) 38, 149, 214, 232
AsuHPI GGTGA 2 cut(s) 29, 143
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 3 cut(s) 38, 149, 214
Bbv12I GWGCWC 1 cut(s) 129
BccI CCATC 4 cut(s) 101, 231, 287, 323
BfaI CTAG 1 cut(s) 416
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme18I GGWCC 3 cut(s) 38, 149, 214
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 4 cut(s) 38, 149, 214, 232
BmiI GGNNCC 3 cut(s) 39, 40, 150
BmsI GCATC 2 cut(s) 58, 382
BplI GAGNNNNNCTC 2 cut(s) 245, 277
BsaJI CCNNGG 2 cut(s) 152, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 285
BseDI CCNNGG 2 cut(s) 152, 189
BseGI GGATG 5 cut(s) 70, 93, 247, 256, 274
BseLI CCNNNNNNNGG 2 cut(s) 84, 285
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 3 cut(s) 51, 398, 400
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 3 cut(s) 77, 174, 233
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 2 cut(s) 62, 266
BslFI GGGAC 3 cut(s) 24, 87, 162
BslI CCNNNNNNNGG 2 cut(s) 84, 285
BsmFI GGGAC 3 cut(s) 24, 87, 162
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 3 cut(s) 77, 174, 233
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 52
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 3 cut(s) 15, 110, 248
BspANI GGCC 3 cut(s) 77, 174, 233
BspFNI CGCG 3 cut(s) 51, 398, 400
BspLI GGNNCC 3 cut(s) 39, 40, 150
BspMI ACCTGC 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 152, 189
BssMI GATC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 152
BstF5I GGATG 5 cut(s) 70, 93, 247, 256, 274
BstFNI CGCG 3 cut(s) 51, 398, 400
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 12, 262
BstUI CGCG 3 cut(s) 51, 398, 400
BsuRI GGCC 3 cut(s) 77, 174, 233
BtsCI GGATG 5 cut(s) 70, 93, 247, 256, 274
BtuMI TCGCGA 1 cut(s) 51
BveI ACCTGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 400
Cfr13I GGNCC 4 cut(s) 38, 149, 214, 232
CviAII CATG 2 cut(s) 317, 420
CviJI RGCY 8 cut(s) 6, 77, 88, 113, 168, 174, 233, 362
CviKI_1 RGCY 8 cut(s) 6, 77, 88, 113, 168, 174, 233, 362
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
EciI GGCGGA 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 152
Eco47I GGWCC 3 cut(s) 38, 149, 214
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 2 cut(s) 320, 423
FaiI YATR 8 cut(s) 74, 84, 107, 258, 312, 318, 359, 421
FaqI GGGAC 3 cut(s) 24, 87, 162
FatI CATG 2 cut(s) 316, 419
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 5 cut(s) 77, 80, 254, 263, 281
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 399
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 3 cut(s) 77, 174, 233
HapII CCGG 2 cut(s) 62, 266
HhaI GCGC 1 cut(s) 400
Hin1II CATG 2 cut(s) 320, 423
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HpaII CCGG 2 cut(s) 62, 266
HphI GGTGA 2 cut(s) 29, 143
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 3 cut(s) 50, 188, 209
Hpy99I CGWCG 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 316, 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 262
Hsp92II CATG 2 cut(s) 320, 423
HspAI GCGC 1 cut(s) 398
KflI GGGWCCC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 75, 107, 279, 348
LweI GCATC 2 cut(s) 58, 382
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 1 cut(s) 338
MnlI CCTC 5 cut(s) 57, 150, 184, 205, 362
MspI CCGG 2 cut(s) 62, 266
Mva1269I GAATGC 1 cut(s) 333
MvnI CGCG 3 cut(s) 51, 398, 400
MwoI GCNNNNNNNGC 2 cut(s) 12, 262
NdeII GATC 1 cut(s) 52
NlaIII CATG 2 cut(s) 320, 423
NlaIV GGNNCC 3 cut(s) 39, 40, 150
NmuCI GTSAC 1 cut(s) 181
NruI TCGCGA 1 cut(s) 51
PaqCI CACCTGC 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PctI GAATGC 1 cut(s) 333
PkrI GCNGC 1 cut(s) 112
Ple19I CGATCG 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
PspN4I GGNNCC 3 cut(s) 39, 40, 150
PspPI GGNCC 4 cut(s) 38, 149, 214, 232
PspPPI RGGWCCY 1 cut(s) 38
PvuI CGATCG 1 cut(s) 55
RruI TCGCGA 1 cut(s) 51
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 4 cut(s) 38, 149, 214, 232
SduI GDGCHC 1 cut(s) 129
SetI ASST 5 cut(s) 49, 126, 201, 216, 417
SfaNI GCATC 2 cut(s) 58, 382
SinI GGWCC 3 cut(s) 38, 149, 214
Sse9I AATT 1 cut(s) 338
SsiI CCGC 3 cut(s) 15, 110, 248
SspMI CTAG 1 cut(s) 416
StyI CCWWGG 1 cut(s) 152
TaqI TCGA 1 cut(s) 367
TasI AATT 1 cut(s) 338
TauI GCSGC 1 cut(s) 113
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspGWI ACGGA 2 cut(s) 86, 393
VpaK11BI GGWCC 3 cut(s) 38, 149, 214
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.