Rroxscaffold_3G00248850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000214
Physical Location & Seq
Forward (+)
42324722 .. 42325261
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248850.1

Sequence Viewer

Length: 540 bp
ATGGGCTTTGGTGGAGGTGATAATCAAGCGAGTCCGGGTCCCACACCTCGCTATCGTTTTCCGGATGATGCTATGGCCTATTATGGGCTTCCCATCCACGGTTCCATAGCGGCTCTTCGGCGGTGCCCGGTGATTTTAGCAGGTTGGGGGCCAAGGAAGAAAGTGGGTTTCGGCCTACCATCGCTCCCGAGGAAAATGTTTGGTATTAGGAGGTCCGAGCGAGAGATTTGGCTCATTGGGATTTGGTGGGTATCACCCAAACCATCGATCTATGCTTGTCTTTCCCATAATACCATCCCTACACCGCTAGCCGCCGCTCTTTGCTTCGGGAACACCTCCAATAATACATTCGATTTTCGGTTTAGGCAAATGAGCATAACTCGCTTGGATGTTCTTACCATCATGGGGTTGCCCATTGACTTTGACCCCTATGTGCATGGTCGGTTTAATGGCATTCAATTTCCTTTGAGAATGGATATGGCTGGTCGGGGGCATCGTAGCAAATCCTACCCATTTTGCCGCGACTATTACCGCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.25

Weight (kDa)

10.08

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 123
AccBSI CCGCTC 1 cut(s) 317
AccII CGCG 1 cut(s) 522
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 7 cut(s) 110, 121, 305, 312, 315, 520, 532
AfiI CCNNNNNNNGG 3 cut(s) 84, 98, 405
AgsI TTSAA 1 cut(s) 458
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
Ama87I CYCGRG 1 cut(s) 187
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 3 cut(s) 75, 149, 172
AspS9I GGNCC 3 cut(s) 38, 149, 213
AsuC2I CCSGG 2 cut(s) 36, 128
AsuHPI GGTGA 3 cut(s) 29, 142, 246
AsuNHI GCTAGC 1 cut(s) 307
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 2 cut(s) 38, 213
BaeGI GKGCMC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 123
BccI CCATC 5 cut(s) 101, 187, 271, 302, 407
BcnI CCSGG 2 cut(s) 36, 128
BfaI CTAG 2 cut(s) 308, 538
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 4 cut(s) 111, 312, 315, 520
BlsI GCNGC 4 cut(s) 112, 313, 316, 521
Bme1390I CCNGG 2 cut(s) 36, 128
Bme18I GGWCC 2 cut(s) 38, 213
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 3 cut(s) 38, 149, 213
BmiI GGNNCC 5 cut(s) 39, 40, 103, 125, 150
BmrFI CCNGG 2 cut(s) 36, 128
BmsI GCATC 2 cut(s) 58, 502
BmtI GCTAGC 1 cut(s) 311
BplI GAGNNNNNCTC 2 cut(s) 364, 396
BpuMI CCSGG 2 cut(s) 36, 128
Bsa29I ATCGAT 1 cut(s) 266
BsaJI CCNNGG 3 cut(s) 97, 152, 188
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 98, 405
BseAI TCCGGA 1 cut(s) 61
BseCI ATCGAT 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 97, 152, 188
BseGI GGATG 4 cut(s) 70, 93, 294, 394
BseLI CCNNNNNNNGG 3 cut(s) 84, 98, 405
BseSI GKGCMC 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 522
BshFI GGCC 3 cut(s) 77, 151, 174
BshNI GGYRCC 1 cut(s) 123
BshVI ATCGAT 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 3 cut(s) 35, 62, 128
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 84, 98, 405
BsmFI GGGAC 1 cut(s) 24
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 3 cut(s) 77, 151, 174
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 128
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 7 cut(s) 110, 121, 305, 312, 315, 520, 532
BspANI GGCC 3 cut(s) 77, 151, 174
BspDI ATCGAT 1 cut(s) 266
BspEI TCCGGA 1 cut(s) 61
BspFNI CGCG 1 cut(s) 522
BspLI GGNNCC 5 cut(s) 39, 40, 103, 125, 150
BspMI ACCTGC 1 cut(s) 131
BspOI GCTAGC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 123
BsrBI CCGCTC 1 cut(s) 317
BssECI CCNNGG 3 cut(s) 97, 152, 188
BssMI GATC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 309
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 4 cut(s) 70, 93, 294, 394
BstFNI CGCG 1 cut(s) 522
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstSCI CCNGG 2 cut(s) 34, 126
BstSLI GKGCMC 1 cut(s) 128
BstUI CGCG 1 cut(s) 522
Bsu15I ATCGAT 1 cut(s) 266
BsuRI GGCC 3 cut(s) 77, 151, 174
BsuTUI ATCGAT 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 4 cut(s) 70, 93, 294, 394
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 309
Cfr13I GGNCC 3 cut(s) 38, 149, 213
ClaI ATCGAT 1 cut(s) 266
CviAII CATG 2 cut(s) 403, 437
CviJI RGCY 9 cut(s) 6, 77, 88, 113, 151, 174, 232, 311, 482
CviKI_1 RGCY 9 cut(s) 6, 77, 88, 113, 151, 174, 232, 311, 482
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 152
Eco47I GGWCC 2 cut(s) 38, 213
Eco88I CYCGRG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 2 cut(s) 406, 440
FaqI GGGAC 1 cut(s) 24
FatI CATG 2 cut(s) 402, 436
Fnu4HI GCNGC 4 cut(s) 111, 312, 315, 520
FokI GGATG 4 cut(s) 77, 80, 281, 401
Fsp4HI GCNGC 4 cut(s) 111, 312, 315, 520
FspBI CTAG 2 cut(s) 308, 538
GluI GCNGC 4 cut(s) 111, 312, 315, 520
HaeIII GGCC 3 cut(s) 77, 151, 174
HapII CCGG 3 cut(s) 35, 62, 128
Hin1II CATG 2 cut(s) 406, 440
HinfI GANTC 1 cut(s) 31
HpaII CCGG 3 cut(s) 35, 62, 128
HphI GGTGA 3 cut(s) 29, 142, 246
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 3 cut(s) 62, 187, 328
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
Hsp92II CATG 2 cut(s) 406, 440
KflI GGGWCCC 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 61
Kzo9I GATC 1 cut(s) 267
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 5 cut(s) 48, 75, 126, 141, 468
LweI GCATC 2 cut(s) 58, 502
MaeI CTAG 2 cut(s) 308, 538
MalI GATC 1 cut(s) 269
MbiI CCGCTC 1 cut(s) 317
MboI GATC 1 cut(s) 267
MboII GAAGA 2 cut(s) 107, 169
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 1 cut(s) 458
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 5 cut(s) 8, 57, 183, 204, 346
MroI TCCGGA 1 cut(s) 61
MseI TTAA 1 cut(s) 447
MspI CCGG 3 cut(s) 35, 62, 128
MspR9I CCNGG 2 cut(s) 36, 128
Mva1269I GAATGC 1 cut(s) 453
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 1 cut(s) 381
NciI CCSGG 2 cut(s) 36, 128
NdeII GATC 1 cut(s) 267
NheI GCTAGC 1 cut(s) 307
NlaIII CATG 2 cut(s) 406, 440
NlaIV GGNNCC 5 cut(s) 39, 40, 103, 125, 150
PciSI GCTCTTC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PctI GAATGC 1 cut(s) 453
PkrI GCNGC 4 cut(s) 112, 313, 316, 521
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
PspN4I GGNNCC 5 cut(s) 39, 40, 103, 125, 150
PspPI GGNCC 3 cut(s) 38, 149, 213
PspPPI RGGWCCY 1 cut(s) 38
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 4 cut(s) 111, 312, 315, 520
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 3 cut(s) 38, 149, 213
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 36, 128
SduI GDGCHC 1 cut(s) 128
SetI ASST 6 cut(s) 19, 49, 145, 215, 338, 539
SfaNI GCATC 2 cut(s) 58, 502
SinI GGWCC 2 cut(s) 38, 213
Sse9I AATT 1 cut(s) 458
SsiI CCGC 7 cut(s) 110, 121, 305, 312, 315, 520, 532
SspMI CTAG 2 cut(s) 308, 538
StyD4I CCNGG 2 cut(s) 34, 126
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 2 cut(s) 266, 351
TasI AATT 1 cut(s) 458
TauI GCSGC 4 cut(s) 113, 314, 317, 522
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
VpaK11BI GGWCC 2 cut(s) 38, 213
XspI CTAG 2 cut(s) 308, 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.