Rmu_sc0002212.1_g000033

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002212.1
OG0000214
Physical Location & Seq
Forward (+)
111104 .. 112042
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002212.1_g000033.1.cds

Sequence Viewer

Length: 939 bp
atggcatccaagaaaccattcattatcgatcaggcagatgaaatgactgagaaagccgcattcacctggcggactaacatgggtgttcgatgcagaagtcagactggagaggagagaactcgactgatgggctttggtggaggtgatagtcaagcgagtctgggtctcacacctcgcgatagtttgccagatgatgctatggcttattatgggcttcccatccgccgtcccatagcggctcttcgacaggtgcccggtgattttagtagttggggaccaaggaggaaagtgggcttccggcctaccatcactcccaaggaaaatgtttgctatcaggaggtccgagcgagagatttggcccgatgggatgcggtgggtatcacccaaaccatcgatctatgcttctgtcttccccataatactagccctacaccgctaggctccgctctttgcttctggaacaccttcagcaatacattcgatttccggtttggctacataactctgctggatgttcttaccatcacggggttgcccattgactttgacccctatgtgcatggtcagtttgatggcattcaatttcctttgagaatggacatggctggtcgtgggcatcgcagaaaatcctactcattatggcgcaactgttactgcacccagcgtgaccatacaggaggtatcgcattcctggaattctggctttgcaaatttatcttttgcacttcttccaacaaacctactaggccctggaattctctggccattgctctctacaacgatatttgcgttggccttgggcaacctgtattgggtgcgttatatcgctccctttatatagccgtaatgcgccccttcgatacctctggatccttgccttttggctgcagatttatttccctcgcttccgtcgcggtgatattccaaacgaacctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

312

Amino Acids

35.13

Weight (kDa)

8.98

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccBSI CCGCTC 1 cut(s) 446
AccII CGCG 2 cut(s) 177, 914
AciI CCGC 8 cut(s) 57, 70, 223, 236, 371, 434, 444, 914
AclWI GGATC 2 cut(s) 864, 877
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 3 cut(s) 695, 710, 754
AcuI CTGAAG 1 cut(s) 451
AfiI CCNNNNNNNGG 2 cut(s) 528, 812
AgsI TTSAA 1 cut(s) 581
AjnI CCWGG 3 cut(s) 65, 690, 749
AjuI GAANNNNNNNTTGG 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 2 cut(s) 864, 877
AoxI GGCC 5 cut(s) 299, 357, 746, 762, 793
ApeKI GCWGC 1 cut(s) 885
ApoI RAATTY 3 cut(s) 695, 710, 754
Asp700I GAANNNNTTC 2 cut(s) 17, 464
AspLEI GCGC 2 cut(s) 645, 852
AspS9I GGNCC 4 cut(s) 275, 340, 358, 747
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 5 cut(s) 55, 155, 269, 373, 928
AvaII GGWCC 2 cut(s) 275, 340
BaeGI GKGCMC 1 cut(s) 255
BalI TGGCCA 1 cut(s) 764
BamHI GGATCC 1 cut(s) 869
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 872
BccI CCATC 7 cut(s) 121, 227, 314, 357, 398, 530, 566
BceAI ACGGC 2 cut(s) 210, 827
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 3 cut(s) 67, 692, 751
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 4 cut(s) 423, 437, 744, 937
BfmI CTRYAG 1 cut(s) 886
BisI GCNGC 3 cut(s) 57, 237, 886
BlsI GCNGC 3 cut(s) 58, 238, 887
Bme1390I CCNGG 4 cut(s) 67, 255, 692, 751
Bme18I GGWCC 2 cut(s) 275, 340
BmgT120I GGNCC 4 cut(s) 275, 340, 358, 747
BmiI GGNNCC 4 cut(s) 252, 276, 442, 871
BmrFI CCNGG 4 cut(s) 67, 255, 692, 751
BmsI GCATC 5 cut(s) 14, 80, 184, 358, 625
BpiI GAAGAC 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 255
Bsa29I ATCGAT 2 cut(s) 27, 393
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 4 cut(s) 278, 315, 749, 796
BsaWI WCCGGW 1 cut(s) 486
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 528, 812
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 765
BseBI CCWGG 3 cut(s) 67, 692, 751
BseCI ATCGAT 2 cut(s) 27, 393
BseDI CCNNGG 4 cut(s) 278, 315, 749, 796
BseGI GGATG 4 cut(s) 5, 219, 373, 517
BseLI CCNNNNNNNGG 2 cut(s) 528, 812
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 1 cut(s) 872
BseYI CCCAGC 1 cut(s) 660
BsgI GTGCAG 1 cut(s) 640
Bsh1236I CGCG 2 cut(s) 177, 914
BshFI GGCC 5 cut(s) 301, 359, 748, 764, 795
BshNI GGYRCC 1 cut(s) 250
BshVI ATCGAT 2 cut(s) 27, 393
BsiSI CCGG 3 cut(s) 255, 298, 487
BslFI GGGAC 2 cut(s) 213, 288
BslI CCNNNNNNNGG 2 cut(s) 528, 812
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 2 cut(s) 213, 288
BsmI GAATGC 3 cut(s) 59, 576, 686
BsnI GGCC 5 cut(s) 301, 359, 748, 764, 795
Bso31I GGTCTC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 3 cut(s) 28, 394, 869
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 8 cut(s) 57, 70, 223, 236, 371, 434, 444, 914
BspANI GGCC 5 cut(s) 301, 359, 748, 764, 795
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 2 cut(s) 27, 393
BspFNI CGCG 2 cut(s) 177, 914
BspLI GGNNCC 4 cut(s) 252, 276, 442, 871
BspMAI CTGCAG 1 cut(s) 890
BspPI GGATC 2 cut(s) 864, 877
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 765
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 4 cut(s) 278, 315, 749, 796
BssMI GATC 3 cut(s) 28, 394, 869
BssT1I CCWWGG 3 cut(s) 278, 315, 796
Bst2UI CCWGG 3 cut(s) 67, 692, 751
Bst4CI ACNGT 1 cut(s) 650
Bst6I CTCTTC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 4 cut(s) 5, 219, 373, 517
BstFNI CGCG 2 cut(s) 177, 914
BstHHI GCGC 2 cut(s) 645, 852
BstKTI GATC 3 cut(s) 31, 397, 872
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 3 cut(s) 28, 394, 869
BstMWI GCNNNNNNNGC 1 cut(s) 911
BstNI CCWGG 3 cut(s) 67, 692, 751
BstSCI CCNGG 4 cut(s) 65, 253, 690, 749
BstSFI CTRYAG 1 cut(s) 886
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 2 cut(s) 177, 914
BstV1I GCAGC 1 cut(s) 872
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 869
BstYI RGATCY 1 cut(s) 869
Bsu15I ATCGAT 2 cut(s) 27, 393
BsuRI GGCC 5 cut(s) 301, 359, 748, 764, 795
BsuTUI ATCGAT 2 cut(s) 27, 393
BtgZI GCGATG 1 cut(s) 602
BtsCI GGATG 4 cut(s) 5, 219, 373, 517
BtuMI TCGCGA 1 cut(s) 177
CfoI GCGC 2 cut(s) 645, 852
Cfr13I GGNCC 4 cut(s) 275, 340, 358, 747
ClaI ATCGAT 2 cut(s) 27, 393
CviAII CATG 3 cut(s) 79, 560, 601
DdeI CTNAG 1 cut(s) 48
DpnI GATC 3 cut(s) 30, 396, 871
DpnII GATC 3 cut(s) 28, 394, 869
EaeI YGGCCR 1 cut(s) 762
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
EciI GGCGGA 2 cut(s) 85, 212
Eco130I CCWWGG 3 cut(s) 278, 315, 796
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 2 cut(s) 275, 340
Eco57I CTGAAG 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 747
EcoRI GAATTC 2 cut(s) 695, 754
EcoRII CCWGG 3 cut(s) 65, 690, 749
EcoT14I CCWWGG 3 cut(s) 278, 315, 796
ErhI CCWWGG 3 cut(s) 278, 315, 796
FaeI CATG 3 cut(s) 82, 563, 604
FaqI GGGAC 2 cut(s) 213, 288
FatI CATG 3 cut(s) 78, 559, 600
Fnu4HI GCNGC 3 cut(s) 57, 237, 886
FokI GGATG 3 cut(s) 206, 380, 524
Fsp4HI GCNGC 3 cut(s) 57, 237, 886
FspBI CTAG 4 cut(s) 423, 437, 744, 937
GlaI GCGC 2 cut(s) 644, 851
GluI GCNGC 3 cut(s) 57, 237, 886
GsaI CCCAGC 1 cut(s) 664
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 5 cut(s) 301, 359, 748, 764, 795
HapII CCGG 3 cut(s) 255, 298, 487
HhaI GCGC 2 cut(s) 645, 852
Hin1II CATG 3 cut(s) 82, 563, 604
Hin6I GCGC 2 cut(s) 643, 850
HinP1I GCGC 2 cut(s) 643, 850
HinfI GANTC 1 cut(s) 157
HpaII CCGG 3 cut(s) 255, 298, 487
HphI GGTGA 5 cut(s) 55, 155, 269, 373, 928
Hpy188I TCNGA 2 cut(s) 102, 344
Hpy188III TCNNGA 4 cut(s) 176, 335, 457, 867
Hpy99I CGWCG 1 cut(s) 914
HpyAV CCTTC 2 cut(s) 475, 865
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4V TGCA 6 cut(s) 93, 559, 657, 708, 723, 888
HpyF10VI GCNNNNNNNGC 1 cut(s) 911
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 3 cut(s) 82, 563, 604
HspAI GCGC 2 cut(s) 643, 850
Kzo9I GATC 3 cut(s) 28, 394, 869
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 2 cut(s) 446, 833
Lsp1109I GCAGC 1 cut(s) 872
LweI GCATC 5 cut(s) 14, 80, 184, 358, 625
MaeI CTAG 4 cut(s) 423, 437, 744, 937
MaeIII GTNAC 2 cut(s) 650, 665
MalI GATC 3 cut(s) 30, 396, 871
MbiI CCGCTC 1 cut(s) 446
MboI GATC 3 cut(s) 28, 394, 869
MboII GAAGA 3 cut(s) 233, 401, 720
MflI RGATCY 1 cut(s) 869
MhlI GDGCHC 1 cut(s) 255
MlsI TGGCCA 1 cut(s) 764
MluCI AATT 4 cut(s) 581, 695, 710, 754
MluNI TGGCCA 1 cut(s) 764
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 756
MnlI CCTC 8 cut(s) 103, 134, 183, 276, 331, 671, 874, 911
Mox20I TGGCCA 1 cut(s) 764
MroXI GAANNNNTTC 2 cut(s) 17, 464
MscI TGGCCA 1 cut(s) 764
Msp20I TGGCCA 1 cut(s) 764
MspI CCGG 3 cut(s) 255, 298, 487
MspR9I CCNGG 4 cut(s) 67, 255, 692, 751
Mva1269I GAATGC 3 cut(s) 59, 576, 686
MvaI CCWGG 3 cut(s) 67, 692, 751
MvnI CGCG 2 cut(s) 177, 914
MwoI GCNNNNNNNGC 1 cut(s) 911
NciI CCSGG 1 cut(s) 255
NdeII GATC 3 cut(s) 28, 394, 869
NlaIII CATG 3 cut(s) 82, 563, 604
NlaIV GGNNCC 4 cut(s) 252, 276, 442, 871
NmuCI GTSAC 1 cut(s) 665
NruI TCGCGA 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 786
PctI GAATGC 3 cut(s) 59, 576, 686
PdmI GAANNNNTTC 2 cut(s) 17, 464
PfoI TCCNGGA 1 cut(s) 690
PkrI GCNGC 3 cut(s) 58, 238, 887
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
Psp6I CCWGG 3 cut(s) 65, 690, 749
PspFI CCCAGC 1 cut(s) 660
PspGI CCWGG 3 cut(s) 65, 690, 749
PspN4I GGNNCC 4 cut(s) 252, 276, 442, 871
PspPI GGNCC 4 cut(s) 275, 340, 358, 747
PstI CTGCAG 1 cut(s) 890
PsuI RGATCY 1 cut(s) 869
RruI TCGCGA 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 246
SatI GCNGC 3 cut(s) 57, 237, 886
Sau3AI GATC 3 cut(s) 28, 394, 869
Sau96I GGNCC 4 cut(s) 275, 340, 358, 747
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 4 cut(s) 67, 255, 692, 751
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 5 cut(s) 14, 80, 184, 358, 625
SfcI CTRYAG 1 cut(s) 886
SinI GGWCC 2 cut(s) 275, 340
Sse9I AATT 4 cut(s) 581, 695, 710, 754
SsiI CCGC 8 cut(s) 57, 70, 223, 236, 371, 434, 444, 914
SspMI CTAG 4 cut(s) 423, 437, 744, 937
StyD4I CCNGG 4 cut(s) 65, 253, 690, 749
StyI CCWWGG 3 cut(s) 278, 315, 796
TaaI ACNGT 1 cut(s) 650
TaqI TCGA 7 cut(s) 27, 88, 121, 244, 393, 480, 858
TasI AATT 4 cut(s) 581, 695, 710, 754
TauI GCSGC 2 cut(s) 59, 239
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 1 cut(s) 885
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 2 cut(s) 10, 54
TspGWI ACGGA 1 cut(s) 898
VpaK11BI GGWCC 2 cut(s) 275, 340
XapI RAATTY 3 cut(s) 695, 710, 754
XmnI GAANNNNTTC 2 cut(s) 17, 464
XspI CTAG 4 cut(s) 423, 437, 744, 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.