Rmu_sc0000110.1_g000025

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000110.1
OG0000214
Physical Location & Seq
Forward (+)
130004 .. 130543
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000110.1_g000025.1.cds

Sequence Viewer

Length: 540 bp
atgagtattcgatgtagacgtcaaaccggagaggagagaagtcgactaatgggctttggtggcggtgatagtcaagcgagtctgggtcccacacctctcgatcgtttgccagatgatgttatggcctattatgggcttcccatccgccgtcccatagcggctcttcggcaggtgcctggtgattttagaagttggggaccaaggaggaaagtgggcttctggcctaccatcactcccgaggaaaaggtttggtttcaggaggtccgagcgagagatttggcccgatgggatgcggtgggtatcacccaaaccatcgatctatgcttctgtcttcctcataatactagccctgcaccgctagccaccgctctttgcttctggaacccctccagcaatacattcgatttccggtttgggcagatgagcataactctgctggatgttcttaccatcacggggttgcccattgactttgacccctatgtgcatggtcaatttgatggcattcaattttctttgagaatggacatggctggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

179

Amino Acids

20.18

Weight (kDa)

6.72

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 160
AatII GACGTC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 172
AccBSI CCGCTC 1 cut(s) 368
AccI GTMKAC 2 cut(s) 16, 43
AciI CCGC 6 cut(s) 63, 145, 158, 293, 356, 366
AcyI GRCGYC 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 132, 456
AgsI TTSAA 1 cut(s) 509
AjnI CCWGG 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 3 cut(s) 123, 221, 279
AspS9I GGNCC 4 cut(s) 86, 197, 262, 280
AsuHPI GGTGA 3 cut(s) 77, 191, 295
AsuNHI GCTAGC 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 3 cut(s) 86, 197, 262
BanI GGYRCC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 323
BccI CCATC 6 cut(s) 149, 236, 279, 320, 458, 494
BceAI ACGGC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 177
BfaI CTAG 2 cut(s) 345, 359
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 3 cut(s) 86, 197, 262
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 4 cut(s) 86, 197, 262, 280
BmiI GGNNCC 5 cut(s) 87, 88, 174, 198, 383
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 280
BmtI GCTAGC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 415, 447
BpmI CTGGAG 1 cut(s) 373
Bsa29I ATCGAT 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 200, 237
BsaWI WCCGGW 2 cut(s) 26, 408
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 456
BseBI CCWGG 1 cut(s) 177
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 200, 237
BseGI GGATG 3 cut(s) 141, 295, 445
BseLI CCNNNNNNNGG 2 cut(s) 132, 456
BseRI GAGGAG 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 336
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 3 cut(s) 125, 223, 281
BshNI GGYRCC 1 cut(s) 172
BshVI ATCGAT 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 27, 409
BslFI GGGAC 3 cut(s) 72, 135, 210
BslI CCNNNNNNNGG 2 cut(s) 132, 456
BsmFI GGGAC 3 cut(s) 72, 135, 210
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 3 cut(s) 125, 223, 281
BsoBI CYCGRG 1 cut(s) 236
Bsp143I GATC 2 cut(s) 100, 316
BspACI CCGC 6 cut(s) 63, 145, 158, 293, 356, 366
BspANI GGCC 3 cut(s) 125, 223, 281
BspDI ATCGAT 1 cut(s) 315
BspLI GGNNCC 5 cut(s) 87, 88, 174, 198, 383
BspMI ACCTGC 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 362
BspQI GCTCTTC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 368
BssECI CCNNGG 2 cut(s) 200, 237
BssMI GATC 2 cut(s) 100, 316
BssNI GRCGYC 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 360
BstF5I GGATG 3 cut(s) 141, 295, 445
BstKTI GATC 2 cut(s) 103, 319
BstMBI GATC 2 cut(s) 100, 316
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 60, 359
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 323
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 3 cut(s) 125, 223, 281
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 3 cut(s) 141, 295, 445
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 360
Cfr13I GGNCC 4 cut(s) 86, 197, 262, 280
ClaI ATCGAT 1 cut(s) 315
CviAII CATG 2 cut(s) 488, 529
DpnI GATC 2 cut(s) 102, 318
DpnII GATC 2 cut(s) 100, 316
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 200
Eco47I GGWCC 3 cut(s) 86, 197, 262
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 491, 532
FaiI YATR 9 cut(s) 122, 132, 155, 322, 339, 428, 483, 489, 530
FaqI GGGAC 3 cut(s) 72, 135, 210
FatI CATG 2 cut(s) 487, 528
FblI GTMKAC 2 cut(s) 16, 43
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 3 cut(s) 128, 302, 452
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 2 cut(s) 345, 359
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 373
HaeIII GGCC 3 cut(s) 125, 223, 281
HapII CCGG 2 cut(s) 27, 409
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 2 cut(s) 491, 532
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HinfI GANTC 1 cut(s) 79
HpaII CCGG 2 cut(s) 27, 409
HphI GGTGA 3 cut(s) 77, 191, 295
Hpy166II GTNNAC 2 cut(s) 17, 44
Hpy188I TCNGA 1 cut(s) 266
Hpy188III TCNNGA 4 cut(s) 98, 236, 257, 379
Hpy8I GTNNAC 2 cut(s) 17, 44
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 353, 487
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 359
HpySE526I ACGT 1 cut(s) 19
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 2 cut(s) 491, 532
KflI GGGWCCC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 100, 316
LguI GCTCTTC 1 cut(s) 168
LweI GCATC 1 cut(s) 280
MaeI CTAG 2 cut(s) 345, 359
MaeII ACGT 1 cut(s) 19
MalI GATC 2 cut(s) 102, 318
MbiI CCGCTC 1 cut(s) 368
MboI GATC 2 cut(s) 100, 316
MboII GAAGA 2 cut(s) 155, 323
MluCI AATT 2 cut(s) 494, 509
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 7 cut(s) 25, 105, 198, 232, 253, 345, 397
MspI CCGG 2 cut(s) 27, 409
MspR9I CCNGG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 60, 359
NdeII GATC 2 cut(s) 100, 316
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 2 cut(s) 491, 532
NlaIV GGNNCC 5 cut(s) 87, 88, 174, 198, 383
PaqCI CACCTGC 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PctI GAATGC 1 cut(s) 504
PkrI GCNGC 1 cut(s) 160
Ple19I CGATCG 1 cut(s) 103
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 5 cut(s) 87, 88, 174, 198, 383
PspPI GGNCC 4 cut(s) 86, 197, 262, 280
PspPPI RGGWCCY 1 cut(s) 86
PvuI CGATCG 1 cut(s) 103
SalI GTCGAC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 168
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 2 cut(s) 100, 316
Sau96I GGNCC 4 cut(s) 86, 197, 262, 280
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 177
SetI ASST 5 cut(s) 22, 97, 174, 249, 264
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 3 cut(s) 86, 197, 262
Sse9I AATT 2 cut(s) 494, 509
SsiI CCGC 6 cut(s) 63, 145, 158, 293, 356, 366
SspMI CTAG 2 cut(s) 345, 359
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 200
TaiI ACGT 1 cut(s) 22
TaqI TCGA 5 cut(s) 10, 43, 99, 315, 402
TasI AATT 2 cut(s) 494, 509
TauI GCSGC 1 cut(s) 161
VpaK11BI GGWCC 3 cut(s) 86, 197, 262
XmiI GTMKAC 2 cut(s) 16, 43
XspI CTAG 2 cut(s) 345, 359
ZraI GACGTC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.