Rmu_sc0003809.1_g000025

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003809.1
OG0000214
Physical Location & Seq
Forward (+)
103790 .. 106546
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003809.1_g000025.1.cds

Sequence Viewer

Length: 2379 bp
atggatatggctagtcgagggcattacagcaaatcctacccattctggcgcgactattactgcacccaacgagaccatacaggaggtatcgcattcctggaattctggctttgcaaatttatcttttgcacttcttccaacaaacctactgggccctggaattctctggccactgctctctacaatggtatttgcgttggccttgggcaacctgtattgggtgcgttatatcgctccctttatagagccgtaatgcgcctatttgataccgacattagttgccccttctggatccttgccttttggctgcagatttatttcactctctttcgtcgcggggatattccaaaggaacctccagttgattcccttttggggaactggcttcgccgcaacgtaaggtatcgagctccaccctactccgagtgttttatttacttgtacttgctgggagagatgccgggcccaaaaatagtcctttctaggcgattccctcctccccttgatgatggatttctgcccagtggacgggatcatagtgaaagagccctcctggcctttcgtcgcgccatctcctgcttggatattcgtcttgccactgatcgcgtaagttacgagctctacgcccctaaccactttgctcgccaatttgggttggcccagttggtaccctggcctctgattgattctgccaattactacacctcttggcggagattatccccgcctgggtctgtcccctttcagagtcaatttactttgatagtgattcccccttgggtcagagcgctataccccctcaacaatgtcgatgatgactatgctgattggtgcaaagaagtgtcagtgaattgttgggacctgccacatgacgaactcttcgtcctgatctatcgtggcatgagtagccctggtccggaggaccgcgagattcttgagcgcttctccaaacctgcagaacaacccccgcgacctattctaccttctcgctcattgcgtccagggatacagatccacgagcctagggcaatacaaactaccaggagtaggacagcctctgttcaggcagggaaacaaaaggcaatagcagaggagacttctgagggagagtcttcgcatgatgaagatcctgctgaggtccgtcaaaagaccactgatccctctctcttgagcgaggctggaccctcagccactgcagaagagccaattctctcgctagttcaagcatcaactaaccctgtggcaactctcccatctcccactacagagcatctgcaaggtcctaccattctaataacgatctctgatgatgactcctcggaggatgaaagcgtggaaagccactctgagacttctgtcgcttatgaggaactgatgacgacagagattctcgcagcactagaggttcaagaggtgaatgaggcggggcctcttcctcttgaccacgtaccagatattgacccgacagctcgagaggtaagccactgtttggccaatactttccatttccctttagatccaaccctgctctctgacatttctgaacttgaccaggattctgtttgtaccgaggaggtggctgcaaacgctgctggtcttatcagcgggacagtcgccccagagatggaaaatgatactaatggtggtggtgccccccaagtctcgcgaacaaatgagacaaccgtcgaagctgagggctctgtgcttgaatctgctccacttacccatggtgagccgcgagttgagtttccagattcccctgaggctgaagagacagaccaacctgttgaagatgaagaaactgaggaagctgtccacccttttgcattggtggttcgtgatcctgtggcgcctctgccgcctcctcctcctaccagattcgagagattgatgagggtgttggaggtaactcctccttctactgtggatgaggctaagatggagaaggtattgaccctgcaacaatttagtgctattgacgatctgctgaatgaacttggtagggctcgccgccatcaatcagctgcgaacgatcaggctcacgacgctcgagaggatttgaataacctttcccgagaaatggacatcccccgcggtattttaaatgagcgagccatccgcctgcgggaactacaaatccaaaggtccgacttcaaacttcggatcgaggatttccaagcccgtttagcctttgttgagaatgcgattgttgcagaagaagctcaactcgatgaacctttggctacttctgaagaaatgggccgcaacctggcccgtatcagagatcgggccactcaggccgaagctggtgccattgcggcgaaacgccacgtggaggagcttcgtttgaaattgagctttgcaggccaatctttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

792

Amino Acids

88.63

Weight (kDa)

4.76

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 870, 961
Acc65I GGTACC 1 cut(s) 667
AccB1I GGYRCC 4 cut(s) 667, 1649, 1849, 2309
AccB7I CCANNNNNTGG 1 cut(s) 1489
AccII CGCG 9 cut(s) 51, 336, 567, 606, 927, 970, 1666, 1738, 2094
AccIII TCCGGA 1 cut(s) 916
AclWI GGATC 9 cut(s) 286, 299, 540, 1006, 1121, 1151, 1511, 1835, 2171
AcoI YGGCCR 2 cut(s) 168, 1491
AcsI RAATTY 3 cut(s) 101, 116, 160
AcuI CTGAAG 2 cut(s) 1788, 2271
AcvI CACGTG 1 cut(s) 2332
AcyI GRCGYC 1 cut(s) 1850
AfaI GTAC 4 cut(s) 443, 669, 1449, 1567
AfeI AGCGCT 2 cut(s) 789, 941
AgsI TTSAA 7 cut(s) 1223, 1409, 1709, 1790, 2062, 2155, 2350
AloI GAACNNNNNNTCC 4 cut(s) 867, 899, 2121, 2153
Alw21I GWGCWC 2 cut(s) 412, 621
Alw26I GTCTC 6 cut(s) 66, 1088, 1343, 1666, 1670, 1766
AlwI GGATC 9 cut(s) 286, 299, 540, 1006, 1121, 1151, 1511, 1835, 2171
AlwNI CAGNNNCTG 2 cut(s) 1058, 1193
Ama87I CYCGRG 3 cut(s) 1470, 2049, 2073
Aor13HI TCCGGA 1 cut(s) 916
Aor51HI AGCGCT 2 cut(s) 789, 941
ApaI GGGCCC 2 cut(s) 156, 467
ApeKI GCWGC 5 cut(s) 307, 1394, 1580, 1589, 2024
ApoI RAATTY 3 cut(s) 101, 116, 160
ArsI GACNNNNNNTTYG 4 cut(s) 863, 867, 895, 899
Asp718I GGTACC 1 cut(s) 667
AspA2I CCTAGG 1 cut(s) 1022
AspLEI GCGC 6 cut(s) 51, 258, 569, 790, 942, 1852
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 1426, 1742
AvaI CYCGRG 3 cut(s) 1470, 2049, 2073
AvaII GGWCC 7 cut(s) 859, 914, 922, 1138, 1181, 1280, 2145
AvrII CCTAGG 1 cut(s) 1022
AxyI CCTNAGG 1 cut(s) 1761
BaeGI GKGCMC 3 cut(s) 156, 467, 1654
BalI TGGCCA 2 cut(s) 170, 1493
BamHI GGATCC 1 cut(s) 291
BanI GGYRCC 4 cut(s) 667, 1649, 1849, 2309
BanII GRGCYC 7 cut(s) 156, 412, 467, 550, 621, 1700, 2008
BauI CACGAG 1 cut(s) 1016
BbrPI CACGTG 1 cut(s) 2332
BbsI GAAGAC 1 cut(s) 1104
Bbv12I GWGCWC 2 cut(s) 412, 621
BbvCI CCTCAGC 3 cut(s) 1134, 1186, 1692
BbvI GCAGC 5 cut(s) 294, 1406, 1567, 1576, 2011
BccI CCATC 7 cut(s) 503, 578, 1261, 1618, 1933, 2022, 2123
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 2291, 2325
BciVI GTATCC 1 cut(s) 999
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 6 cut(s) 66, 1088, 1343, 1666, 1670, 1766
BfaI CTAG 5 cut(s) 12, 483, 1023, 1217, 1400
BfmI CTRYAG 4 cut(s) 308, 954, 1194, 1263
BfoI RGCGCY 3 cut(s) 791, 943, 1853
BfuAI ACCTGC 2 cut(s) 870, 961
BfuI GTATCC 1 cut(s) 999
BglI GCCNNNNNGGC 3 cut(s) 554, 2297, 2318
BlnI CCTAGG 1 cut(s) 1022
Bme18I GGWCC 7 cut(s) 859, 914, 922, 1138, 1181, 1280, 2145
BmeT110I CYCGRG 3 cut(s) 1470, 2049, 2073
BmrI ACTGGG 3 cut(s) 159, 516, 655
BmsI GCATC 3 cut(s) 447, 1235, 1279
BmuI ACTGGG 3 cut(s) 159, 516, 655
BoxI GACNNNNGTC 2 cut(s) 1355, 1682
BpiI GAAGAC 1 cut(s) 1104
BplI GAGNNNNNCTC 2 cut(s) 929, 961
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 3 cut(s) 1134, 1186, 1692
BpuEI CTTGAG 2 cut(s) 956, 1189
BpuMI CCSGG 1 cut(s) 462
BsaAI YACGTR 2 cut(s) 1447, 2332
BsaBI GATNNNNATC 2 cut(s) 1010, 1125
BsaHI GRCGYC 1 cut(s) 1850
BsaI GGTCTC 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 916
Bse1I ACTGG 5 cut(s) 154, 359, 386, 522, 661
Bse21I CCTNAGG 1 cut(s) 1761
Bse3DI GCAATG 2 cut(s) 992, 2313
Bse8I GATNNNNATC 2 cut(s) 1010, 1125
BseAI TCCGGA 1 cut(s) 916
BseGI GGATG 4 cut(s) 1330, 1933, 2085, 2115
BseJI GATNNNNATC 2 cut(s) 1010, 1125
BseMI GCAATG 2 cut(s) 992, 2313
BseMII CTCAG 8 cut(s) 1092, 1125, 1200, 1338, 1683, 1752, 1794, 2309
BseNI ACTGG 5 cut(s) 154, 359, 386, 522, 661
BseRI GAGGAG 8 cut(s) 486, 1106, 1306, 1586, 1854, 1857, 1902, 2351
BseSI GKGCMC 3 cut(s) 156, 467, 1654
BseXI GCAGC 5 cut(s) 294, 1406, 1567, 1576, 2011
BseYI CCCAGC 1 cut(s) 448
BsgI GTGCAG 1 cut(s) 46
Bsh1236I CGCG 9 cut(s) 51, 336, 567, 606, 927, 970, 1666, 1738, 2094
BshNI GGYRCC 4 cut(s) 667, 1649, 1849, 2309
BsiHKAI GWGCWC 2 cut(s) 412, 621
BsiHKCI CYCGRG 3 cut(s) 1470, 2049, 2073
BsiSI CCGG 2 cut(s) 461, 917
BslFI GGGAC 3 cut(s) 722, 872, 1621
BsmAI GTCTC 6 cut(s) 66, 1088, 1343, 1666, 1670, 1766
BsmFI GGGAC 3 cut(s) 722, 872, 1621
BsmI GAATGC 2 cut(s) 92, 2206
Bso31I GGTCTC 1 cut(s) 66
BsoBI CYCGRG 3 cut(s) 1470, 2049, 2073
Bsp120I GGGCCC 2 cut(s) 152, 463
Bsp1286I GDGCHC 8 cut(s) 156, 412, 467, 550, 621, 1654, 1700, 2008
Bsp13I TCCGGA 1 cut(s) 916
Bsp19I CCATGG 1 cut(s) 1726
Bsp68I TCGCGA 1 cut(s) 1666
BspCNI CTCAG 8 cut(s) 1093, 1126, 1199, 1339, 1684, 1753, 1795, 2308
BspEI TCCGGA 1 cut(s) 916
BspFNI CGCG 9 cut(s) 51, 336, 567, 606, 927, 970, 1666, 1738, 2094
BspMAI CTGCAG 3 cut(s) 312, 958, 1198
BspMI ACCTGC 2 cut(s) 870, 961
BspPI GGATC 9 cut(s) 286, 299, 540, 1006, 1121, 1151, 1511, 1835, 2171
BspQI GCTCTTC 1 cut(s) 1194
BspT107I GGYRCC 4 cut(s) 667, 1649, 1849, 2309
BspTNI GGTCTC 1 cut(s) 66
BsrDI GCAATG 2 cut(s) 992, 2313
BsrI ACTGG 5 cut(s) 154, 359, 386, 522, 661
BssNI GRCGYC 1 cut(s) 1850
BssSI CACGAG 1 cut(s) 1016
BssT1I CCWWGG 4 cut(s) 202, 776, 1022, 1726
Bst2BI CACGAG 1 cut(s) 1016
Bst4CI ACNGT 4 cut(s) 1487, 1612, 1684, 1924
Bst6I CTCTTC 4 cut(s) 884, 1194, 1437, 1764
BstACI GRCGYC 1 cut(s) 1850
BstAPI GCANNNNNTGC 1 cut(s) 1589
BstBAI YACGTR 2 cut(s) 1447, 2332
BstC8I GCNNGC 5 cut(s) 643, 2008, 2112, 2123, 2365
BstDEI CTNAG 9 cut(s) 1101, 1134, 1186, 1347, 1692, 1761, 1803, 1935, 2295
BstDSI CCRYGG 2 cut(s) 1726, 2092
BstF5I GGATG 4 cut(s) 1330, 1933, 2085, 2115
BstFNI CGCG 9 cut(s) 51, 336, 567, 606, 927, 970, 1666, 1738, 2094
BstH2I RGCGCY 3 cut(s) 791, 943, 1853
BstHHI GCGC 6 cut(s) 51, 258, 569, 790, 942, 1852
BstMAI GTCTC 6 cut(s) 66, 1088, 1343, 1666, 1670, 1766
BstPAI GACNNNNGTC 2 cut(s) 1355, 1682
BstSFI CTRYAG 4 cut(s) 308, 954, 1194, 1263
BstSLI GKGCMC 3 cut(s) 156, 467, 1654
BstUI CGCG 9 cut(s) 51, 336, 567, 606, 927, 970, 1666, 1738, 2094
BstV1I GCAGC 5 cut(s) 294, 1406, 1567, 1576, 2011
BstV2I GAAGAC 1 cut(s) 1104
BstX2I RGATCY 4 cut(s) 291, 1011, 1126, 1516
BstYI RGATCY 4 cut(s) 291, 1011, 1126, 1516
Bsu36I CCTNAGG 1 cut(s) 1761
BsuI GTATCC 1 cut(s) 999
BtgI CCRYGG 2 cut(s) 1726, 2092
BtsCI GGATG 4 cut(s) 1330, 1933, 2085, 2115
BtsI GCAGTG 2 cut(s) 171, 1191
BtsIMutI CAGTG 7 cut(s) 171, 529, 597, 852, 1152, 1191, 1483
BtuMI TCGCGA 1 cut(s) 1666
BveI ACCTGC 2 cut(s) 870, 961
Cac8I GCNNGC 5 cut(s) 643, 2008, 2112, 2123, 2365
CaiI CAGNNNCTG 2 cut(s) 1058, 1193
CfoI GCGC 6 cut(s) 51, 258, 569, 790, 942, 1852
Cfr42I CCGCGG 1 cut(s) 2095
CseI GACGC 2 cut(s) 986, 2054
Csp6I GTAC 4 cut(s) 442, 668, 1448, 1566
CviAII CATG 4 cut(s) 869, 901, 1118, 1727
CviQI GTAC 4 cut(s) 442, 668, 1448, 1566
DdeI CTNAG 9 cut(s) 1101, 1134, 1186, 1347, 1692, 1761, 1803, 1935, 2295
DinI GGCGCC 1 cut(s) 1851
DraI TTTAAA 1 cut(s) 2103
EaeI YGGCCR 2 cut(s) 168, 1491
Eam1104I CTCTTC 4 cut(s) 884, 1194, 1437, 1764
EarI CTCTTC 4 cut(s) 884, 1194, 1437, 1764
EciI GGCGGA 2 cut(s) 727, 2108
Ecl136II GAGCTC 2 cut(s) 410, 619
Eco130I CCWWGG 4 cut(s) 202, 776, 1022, 1726
Eco24I GRGCYC 7 cut(s) 156, 412, 467, 550, 621, 1700, 2008
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 7 cut(s) 859, 914, 922, 1138, 1181, 1280, 2145
Eco47III AGCGCT 2 cut(s) 789, 941
Eco53kI GAGCTC 2 cut(s) 410, 619
Eco57I CTGAAG 2 cut(s) 1788, 2271
Eco72I CACGTG 1 cut(s) 2332
Eco81I CCTNAGG 1 cut(s) 1761
Eco88I CYCGRG 3 cut(s) 1470, 2049, 2073
EcoICRI GAGCTC 2 cut(s) 410, 619
EcoO109I RGGNCCY 4 cut(s) 153, 859, 1280, 1427
EcoRI GAATTC 2 cut(s) 101, 160
EcoT14I CCWWGG 4 cut(s) 202, 776, 1022, 1726
EcoT38I GRGCYC 7 cut(s) 156, 412, 467, 550, 621, 1700, 2008
EgeI GGCGCC 1 cut(s) 1851
EheI GGCGCC 1 cut(s) 1851
ErhI CCWWGG 4 cut(s) 202, 776, 1022, 1726
FaeI CATG 4 cut(s) 872, 904, 1121, 1730
FaqI GGGAC 3 cut(s) 722, 872, 1621
FatI CATG 4 cut(s) 868, 900, 1117, 1726
FauI CCCGC 7 cut(s) 329, 732, 975, 1417, 1598, 2099, 2118
FokI GGATG 4 cut(s) 1337, 1940, 2072, 2102
FriOI GRGCYC 7 cut(s) 156, 412, 467, 550, 621, 1700, 2008
FspBI CTAG 5 cut(s) 12, 483, 1023, 1217, 1400
GlaI GCGC 6 cut(s) 50, 257, 568, 789, 941, 1851
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 342
HaeII RGCGCY 3 cut(s) 791, 943, 1853
HapII CCGG 2 cut(s) 461, 917
HgaI GACGC 2 cut(s) 986, 2054
HhaI GCGC 6 cut(s) 51, 258, 569, 790, 942, 1852
Hin1I GRCGYC 1 cut(s) 1850
Hin1II CATG 4 cut(s) 872, 904, 1121, 1730
Hin6I GCGC 6 cut(s) 49, 256, 567, 788, 940, 1850
HinP1I GCGC 6 cut(s) 49, 256, 567, 788, 940, 1850
HpaII CCGG 2 cut(s) 461, 917
HphI GGTGA 2 cut(s) 1426, 1742
Hpy166II GTNNAC 2 cut(s) 527, 1816
Hpy8I GTNNAC 2 cut(s) 527, 1816
Hpy99I CGWCG 4 cut(s) 336, 567, 1688, 2048
HpyAV CCTTC 4 cut(s) 295, 993, 1926, 1939
HpyCH4III ACNGT 4 cut(s) 1487, 1612, 1684, 1924
HpyCH4IV ACGT 3 cut(s) 396, 1446, 2331
HpyF3I CTNAG 9 cut(s) 1101, 1134, 1186, 1347, 1692, 1761, 1803, 1935, 2295
HpySE526I ACGT 3 cut(s) 396, 1446, 2331
Hsp92I GRCGYC 1 cut(s) 1850
Hsp92II CATG 4 cut(s) 872, 904, 1121, 1730
HspAI GCGC 6 cut(s) 49, 256, 567, 788, 940, 1850
KasI GGCGCC 1 cut(s) 1849
Kpn2I TCCGGA 1 cut(s) 916
KpnI GGTACC 1 cut(s) 671
KspI CCGCGG 1 cut(s) 2095
LguI GCTCTTC 1 cut(s) 1194
LmnI GCTCC 4 cut(s) 239, 415, 1720, 2338
Lsp1109I GCAGC 5 cut(s) 294, 1406, 1567, 1576, 2011
LweI GCATC 3 cut(s) 447, 1235, 1279
MaeI CTAG 5 cut(s) 12, 483, 1023, 1217, 1400
MaeII ACGT 3 cut(s) 396, 1446, 2331
MaeIII GTNAC 2 cut(s) 611, 1906
MflI RGATCY 4 cut(s) 291, 1011, 1126, 1516
MhlI GDGCHC 8 cut(s) 156, 412, 467, 550, 621, 1654, 1700, 2008
MlsI TGGCCA 2 cut(s) 170, 1493
MluNI TGGCCA 2 cut(s) 170, 1493
Mly113I GGCGCC 1 cut(s) 1850
MlyI GAGTC 3 cut(s) 757, 1118, 1307
MmeI TCCRAC 4 cut(s) 162, 1544, 1881, 2172
Mox20I TGGCCA 2 cut(s) 170, 1493
MroI TCCGGA 1 cut(s) 916
MscI TGGCCA 2 cut(s) 170, 1493
MseI TTAA 1 cut(s) 2102
Msp20I TGGCCA 2 cut(s) 170, 1493
MspA1I CMGCKG 3 cut(s) 1605, 2024, 2094
MspI CCGG 2 cut(s) 461, 917
Mva1269I GAATGC 2 cut(s) 92, 2206
MvnI CGCG 9 cut(s) 51, 336, 567, 606, 927, 970, 1666, 1738, 2094
NarI GGCGCC 1 cut(s) 1850
NciI CCSGG 1 cut(s) 462
NcoI CCATGG 1 cut(s) 1726
NlaIII CATG 4 cut(s) 872, 904, 1121, 1730
NruI TCGCGA 1 cut(s) 1666
PaeR7I CTCGAG 2 cut(s) 1470, 2049
PciSI GCTCTTC 1 cut(s) 1194
PcsI WCGNNNNNNNCGW 2 cut(s) 879, 994
PctI GAATGC 2 cut(s) 92, 2206
PflMI CCANNNNNTGG 1 cut(s) 1489
PfoI TCCNGGA 1 cut(s) 96
PleI GAGTC 3 cut(s) 756, 1117, 1307
PluTI GGCGCC 1 cut(s) 1853
PmaCI CACGTG 1 cut(s) 2332
PmlI CACGTG 1 cut(s) 2332
PpsI GAGTC 3 cut(s) 756, 1117, 1307
Ppu21I YACGTR 2 cut(s) 1447, 2332
PpuMI RGGWCCY 2 cut(s) 859, 1280
PshAI GACNNNNGTC 2 cut(s) 1355, 1682
Psp124BI GAGCTC 2 cut(s) 412, 621
Psp5II RGGWCCY 2 cut(s) 859, 1280
PspCI CACGTG 1 cut(s) 2332
PspFI CCCAGC 1 cut(s) 448
PspOMI GGGCCC 2 cut(s) 152, 463
PspPPI RGGWCCY 2 cut(s) 859, 1280
PstI CTGCAG 3 cut(s) 312, 958, 1198
PstNI CAGNNNCTG 2 cut(s) 1058, 1193
PsuI RGATCY 4 cut(s) 291, 1011, 1126, 1516
PvuII CAGCTG 1 cut(s) 2024
RruI TCGCGA 1 cut(s) 1666
RsaI GTAC 4 cut(s) 443, 669, 1449, 1567
RsaNI GTAC 4 cut(s) 442, 668, 1448, 1566
SacI GAGCTC 2 cut(s) 412, 621
SacII CCGCGG 1 cut(s) 2095
SapI GCTCTTC 1 cut(s) 1194
SaqAI TTAA 1 cut(s) 2102
SchI GAGTC 3 cut(s) 757, 1118, 1307
SduI GDGCHC 8 cut(s) 156, 412, 467, 550, 621, 1654, 1700, 2008
SfaNI GCATC 3 cut(s) 447, 1235, 1279
SfcI CTRYAG 4 cut(s) 308, 954, 1194, 1263
SfiI GGCCNNNNNGGCC 1 cut(s) 2297
SfoI GGCGCC 1 cut(s) 1851
Sfr274I CTCGAG 2 cut(s) 1470, 2049
Sfr303I CCGCGG 1 cut(s) 2095
SgrBI CCGCGG 1 cut(s) 2095
SinI GGWCC 7 cut(s) 859, 914, 922, 1138, 1181, 1280, 2145
SlaI CTCGAG 2 cut(s) 1470, 2049
SmlI CTYRAG 4 cut(s) 935, 1168, 1470, 2049
SmoI CTYRAG 4 cut(s) 935, 1168, 1470, 2049
SspDI GGCGCC 1 cut(s) 1849
SspMI CTAG 5 cut(s) 12, 483, 1023, 1217, 1400
SstI GAGCTC 2 cut(s) 412, 621
StyI CCWWGG 4 cut(s) 202, 776, 1022, 1726
TaaI ACNGT 4 cut(s) 1487, 1612, 1684, 1924
TaiI ACGT 3 cut(s) 399, 1449, 2334
TaqI TCGA 9 cut(s) 16, 406, 810, 1471, 1686, 1881, 2050, 2166, 2229
TatI WGTACW 1 cut(s) 441
TauI GCSGC 6 cut(s) 393, 1738, 1861, 2013, 2265, 2321
Tru1I TTAA 1 cut(s) 2102
Tru9I TTAA 1 cut(s) 2102
TscAI CASTG 7 cut(s) 178, 529, 604, 852, 1159, 1198, 1490
TseI GCWGC 5 cut(s) 307, 1394, 1580, 1589, 2024
TspDTI ATGAA 5 cut(s) 1137, 1341, 1809, 2007, 2247
TspGWI ACGGA 1 cut(s) 1130
TspRI CASTG 7 cut(s) 178, 529, 604, 852, 1159, 1198, 1490
Van91I CCANNNNNTGG 1 cut(s) 1489
VpaK11BI GGWCC 7 cut(s) 859, 914, 922, 1138, 1181, 1280, 2145
XapI RAATTY 3 cut(s) 101, 116, 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XhoI CTCGAG 2 cut(s) 1470, 2049
XmaJI CCTAGG 1 cut(s) 1022
XspI CTAG 5 cut(s) 12, 483, 1023, 1217, 1400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.