Rmu_sc0000240.1_g000061

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000240.1
OG0000214
Physical Location & Seq
Forward (+)
285662 .. 286477
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000240.1_g000061.1.cds

Sequence Viewer

Length: 816 bp
atggttccttgcgacctagaaatggcatccaagaaaccattcgttatcgatcaggcagatgaaatcactgaaaaagccgcattcaactggctgactaacatgagtattcgatgtagacgtcagaccggagaggagagaagccgactgatgggctttagtggcggtgatagtcaagcgagtctgggtcccacacctcgcgatcgtttgccagatgatgctatggcctattatgggcttcccatccgccgtcccatagcggctcttcggcaagtgcctggtgattttagcagttggggaccaaggaggaaagtgggcttctggcctaccgtcactcccaaggaaaaggtttggtatcatgaggtccgagcgagagatttggcccgatgggatgcggtgggtatcacccaaaccatcgatctatacttatgtcttccccataatactagccctgcaccgctagccgccgctctttgcttctggaacacctccagcaatacattcaatttccggtttgggcagatgagcataactctgatagatcttcttaccatcacggggttgcccattgactttgacccctatgtgcatggtcagtttgatgacattcaattttctttgagaatggatatggctggtcgagggcttcacagcaaatcctacccattctggctcgactattactgcacccagcgtgaccatacaggaggtatcgcattcttggaattctggctttgcaaatttatcttttgcacttcttccaacaaacctactgggccctggaattctctggccactgctctctacaatggtatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

271

Amino Acids

30.79

Weight (kDa)

7.59

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 121
AccBSI CCGCTC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 115
AccII CGCG 1 cut(s) 198
AciI CCGC 8 cut(s) 78, 162, 244, 257, 392, 455, 462, 465
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 3 cut(s) 722, 737, 781
AcyI GRCGYC 1 cut(s) 118
AfiI CCNNNNNNNGG 4 cut(s) 22, 148, 231, 555
AgsI TTSAA 3 cut(s) 85, 502, 608
AjnI CCWGG 2 cut(s) 274, 776
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AoxI GGCC 5 cut(s) 222, 320, 378, 773, 789
ApaI GGGCCC 1 cut(s) 777
ApoI RAATTY 3 cut(s) 722, 737, 781
Asp700I GAANNNNTTC 1 cut(s) 38
AspS9I GGNCC 6 cut(s) 185, 296, 361, 379, 773, 774
AsuHPI GGTGA 3 cut(s) 176, 290, 394
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 3 cut(s) 185, 296, 361
BaeGI GKGCMC 1 cut(s) 777
BalI TGGCCA 1 cut(s) 791
BanII GRGCYC 1 cut(s) 777
BbsI GAAGAC 1 cut(s) 422
BccI CCATC 5 cut(s) 142, 248, 378, 419, 557
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 2 cut(s) 276, 778
BfaI CTAG 3 cut(s) 17, 444, 458
BglII AGATCT 1 cut(s) 538
BisI GCNGC 4 cut(s) 78, 258, 462, 465
BlsI GCNGC 4 cut(s) 79, 259, 463, 466
Bme1390I CCNGG 2 cut(s) 276, 778
Bme18I GGWCC 3 cut(s) 185, 296, 361
BmgT120I GGNCC 6 cut(s) 185, 296, 361, 379, 773, 774
BmiI GGNNCC 5 cut(s) 6, 186, 187, 297, 775
BmrFI CCNGG 2 cut(s) 276, 778
BmrI ACTGGG 1 cut(s) 780
BmsI GCATC 3 cut(s) 35, 205, 379
BmtI GCTAGC 1 cut(s) 461
BmuI ACTGGG 1 cut(s) 780
BpiI GAAGAC 1 cut(s) 422
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpmI CTGGAG 1 cut(s) 472
Bsa29I ATCGAT 2 cut(s) 48, 414
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 299, 336, 776
BsaWI WCCGGW 2 cut(s) 125, 507
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 148, 231, 555
Bse1I ACTGG 2 cut(s) 92, 775
BseBI CCWGG 2 cut(s) 276, 778
BseCI ATCGAT 2 cut(s) 48, 414
BseDI CCNNGG 3 cut(s) 299, 336, 776
BseGI GGATG 3 cut(s) 26, 240, 394
BseLI CCNNNNNNNGG 4 cut(s) 22, 148, 231, 555
BseNI ACTGG 2 cut(s) 92, 775
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 777
BseYI CCCAGC 1 cut(s) 687
BsgI GTGCAG 2 cut(s) 435, 667
Bsh1236I CGCG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 5 cut(s) 224, 322, 380, 775, 791
BshVI ATCGAT 2 cut(s) 48, 414
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 2 cut(s) 126, 508
BslFI GGGAC 3 cut(s) 171, 234, 309
BslI CCNNNNNNNGG 4 cut(s) 22, 148, 231, 555
BsmFI GGGAC 3 cut(s) 171, 234, 309
BsmI GAATGC 2 cut(s) 80, 713
BsnI GGCC 5 cut(s) 224, 322, 380, 775, 791
Bsp120I GGGCCC 1 cut(s) 773
Bsp1286I GDGCHC 1 cut(s) 777
Bsp143I GATC 4 cut(s) 49, 199, 415, 538
Bsp68I TCGCGA 1 cut(s) 198
BspACI CCGC 8 cut(s) 78, 162, 244, 257, 392, 455, 462, 465
BspANI GGCC 5 cut(s) 224, 322, 380, 775, 791
BspDI ATCGAT 2 cut(s) 48, 414
BspFNI CGCG 1 cut(s) 198
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 5 cut(s) 6, 186, 187, 297, 775
BspOI GCTAGC 1 cut(s) 461
BspQI GCTCTTC 1 cut(s) 267
BsrBI CCGCTC 1 cut(s) 467
BsrI ACTGG 2 cut(s) 92, 775
BssECI CCNNGG 3 cut(s) 299, 336, 776
BssMI GATC 4 cut(s) 49, 199, 415, 538
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 2 cut(s) 299, 336
Bst2UI CCWGG 2 cut(s) 276, 778
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 459
BstF5I GGATG 3 cut(s) 26, 240, 394
BstFNI CGCG 1 cut(s) 198
BstKTI GATC 4 cut(s) 52, 202, 418, 541
BstMBI GATC 4 cut(s) 49, 199, 415, 538
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 159, 458
BstNI CCWGG 2 cut(s) 276, 778
BstSCI CCNGG 2 cut(s) 274, 776
BstSLI GKGCMC 1 cut(s) 777
BstUI CGCG 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
Bsu15I ATCGAT 2 cut(s) 48, 414
BsuRI GGCC 5 cut(s) 224, 322, 380, 775, 791
BsuTUI ATCGAT 2 cut(s) 48, 414
BtsCI GGATG 3 cut(s) 26, 240, 394
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 2 cut(s) 66, 792
BtuMI TCGCGA 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 459
CciI TCATGA 1 cut(s) 355
Cfr13I GGNCC 6 cut(s) 185, 296, 361, 379, 773, 774
ClaI ATCGAT 2 cut(s) 48, 414
CviAII CATG 3 cut(s) 100, 356, 587
DpnI GATC 4 cut(s) 51, 201, 417, 540
DpnII GATC 4 cut(s) 49, 199, 415, 538
EaeI YGGCCR 1 cut(s) 789
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
EciI GGCGGA 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 299, 336
Eco24I GRGCYC 1 cut(s) 777
Eco47I GGWCC 3 cut(s) 185, 296, 361
EcoO109I RGGNCCY 2 cut(s) 185, 774
EcoRI GAATTC 2 cut(s) 722, 781
EcoRII CCWGG 2 cut(s) 274, 776
EcoT14I CCWWGG 2 cut(s) 299, 336
EcoT38I GRGCYC 1 cut(s) 777
ErhI CCWWGG 2 cut(s) 299, 336
FaeI CATG 3 cut(s) 103, 359, 590
FaqI GGGAC 3 cut(s) 171, 234, 309
FatI CATG 3 cut(s) 99, 355, 586
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 4 cut(s) 78, 258, 462, 465
FokI GGATG 3 cut(s) 13, 227, 401
FriOI GRGCYC 1 cut(s) 777
Fsp4HI GCNGC 4 cut(s) 78, 258, 462, 465
FspBI CTAG 3 cut(s) 17, 444, 458
GluI GCNGC 4 cut(s) 78, 258, 462, 465
GsaI CCCAGC 1 cut(s) 691
GsuI CTGGAG 1 cut(s) 472
HaeIII GGCC 5 cut(s) 224, 322, 380, 775, 791
HapII CCGG 2 cut(s) 126, 508
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 3 cut(s) 103, 359, 590
HinfI GANTC 1 cut(s) 178
HpaII CCGG 2 cut(s) 126, 508
HphI GGTGA 3 cut(s) 176, 290, 394
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 3 cut(s) 123, 365, 534
Hpy188III TCNNGA 3 cut(s) 197, 356, 478
Hpy8I GTNNAC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 5 cut(s) 452, 586, 684, 735, 750
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 458
HpySE526I ACGT 1 cut(s) 118
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 3 cut(s) 103, 359, 590
KflI GGGWCCC 1 cut(s) 185
Kzo9I GATC 4 cut(s) 49, 199, 415, 538
LguI GCTCTTC 1 cut(s) 267
LweI GCATC 3 cut(s) 35, 205, 379
MaeI CTAG 3 cut(s) 17, 444, 458
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 2 cut(s) 328, 692
MalI GATC 4 cut(s) 51, 201, 417, 540
MbiI CCGCTC 1 cut(s) 467
MboI GATC 4 cut(s) 49, 199, 415, 538
MboII GAAGA 4 cut(s) 254, 422, 533, 747
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 1 cut(s) 777
MlsI TGGCCA 1 cut(s) 791
MluCI AATT 5 cut(s) 502, 608, 722, 737, 781
MluNI TGGCCA 1 cut(s) 791
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 783
MnlI CCTC 7 cut(s) 124, 204, 297, 352, 496, 632, 698
Mox20I TGGCCA 1 cut(s) 791
MroXI GAANNNNTTC 1 cut(s) 38
MscI TGGCCA 1 cut(s) 791
Msp20I TGGCCA 1 cut(s) 791
MspI CCGG 2 cut(s) 126, 508
MspR9I CCNGG 2 cut(s) 276, 778
Mva1269I GAATGC 2 cut(s) 80, 713
MvaI CCWGG 2 cut(s) 276, 778
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 159, 458
NdeII GATC 4 cut(s) 49, 199, 415, 538
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 3 cut(s) 103, 359, 590
NlaIV GGNNCC 5 cut(s) 6, 186, 187, 297, 775
NmuCI GTSAC 2 cut(s) 328, 692
NruI TCGCGA 1 cut(s) 198
PagI TCATGA 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PctI GAATGC 2 cut(s) 80, 713
PdmI GAANNNNTTC 1 cut(s) 38
PkrI GCNGC 4 cut(s) 79, 259, 463, 466
Ple19I CGATCG 1 cut(s) 202
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PpuMI RGGWCCY 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 185
Psp6I CCWGG 2 cut(s) 274, 776
PspFI CCCAGC 1 cut(s) 687
PspGI CCWGG 2 cut(s) 274, 776
PspN4I GGNNCC 5 cut(s) 6, 186, 187, 297, 775
PspOMI GGGCCC 1 cut(s) 773
PspPI GGNCC 6 cut(s) 185, 296, 361, 379, 773, 774
PspPPI RGGWCCY 1 cut(s) 185
PsuI RGATCY 1 cut(s) 538
PvuI CGATCG 1 cut(s) 202
RruI TCGCGA 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 267
SatI GCNGC 4 cut(s) 78, 258, 462, 465
Sau3AI GATC 4 cut(s) 49, 199, 415, 538
Sau96I GGNCC 6 cut(s) 185, 296, 361, 379, 773, 774
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 2 cut(s) 276, 778
SduI GDGCHC 1 cut(s) 777
SetI ASST 8 cut(s) 18, 121, 196, 348, 363, 488, 709, 769
SfaNI GCATC 3 cut(s) 35, 205, 379
SinI GGWCC 3 cut(s) 185, 296, 361
Sse9I AATT 5 cut(s) 502, 608, 722, 737, 781
SsiI CCGC 8 cut(s) 78, 162, 244, 257, 392, 455, 462, 465
SspMI CTAG 3 cut(s) 17, 444, 458
StyD4I CCNGG 2 cut(s) 274, 776
StyI CCWWGG 2 cut(s) 299, 336
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 121
TaqI TCGA 5 cut(s) 48, 109, 414, 637, 672
TasI AATT 5 cut(s) 502, 608, 722, 737, 781
TauI GCSGC 4 cut(s) 80, 260, 464, 467
TscAI CASTG 2 cut(s) 73, 799
TseFI GTSAC 2 cut(s) 328, 692
Tsp45I GTSAC 2 cut(s) 328, 692
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 2 cut(s) 73, 799
VpaK11BI GGWCC 3 cut(s) 185, 296, 361
XapI RAATTY 3 cut(s) 722, 737, 781
XmiI GTMKAC 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 3 cut(s) 17, 444, 458
ZraI GACGTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.