Rmu_ssc0000309.1_g000024

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000309.1
OG0000214
Physical Location & Seq
Forward (+)
78004 .. 78513
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000309.1_g000024.1.cds

Sequence Viewer

Length: 510 bp
atgagcataactctgctggatgttcttaccatcacggggttgcctattgactttgacccctatgtgcatggtcagtttgatggcattcaatttcctttgagaatagatatggatggtcgggggcatcacaacaaatcctacccattctggcgtgactattactgcacccagcgcaaccacataggaggtatcgcattcctggaattctggctttgcaaatttatcttttgcacttcttccaacaaacctactgggacctggaattctttggccactgctctctacaatggtatttgcgttggccttgggcaacctgtattgggtgcgttatatcgctccctttataaagccgtaatgctcctttttgatacagacattagtggccctttctggatcctcgccttttggctgcagatttatttccctcgcttccgtcgcggtgatattccaaaggatcctccagtcgattcccttttggggaattggctttgccgcaacataaggttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

169

Amino Acids

19.51

Weight (kDa)

8.29

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccII CGCG 1 cut(s) 438
AciI CCGC 2 cut(s) 438, 493
AclWI GGATC 4 cut(s) 388, 401, 449, 462
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 3 cut(s) 203, 218, 262
AfiI CCNNNNNNNGG 3 cut(s) 36, 320, 477
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 2 cut(s) 198, 257
AlwI GGATC 4 cut(s) 388, 401, 449, 462
AoxI GGCC 3 cut(s) 270, 301, 382
ApeKI GCWGC 1 cut(s) 409
ApoI RAATTY 3 cut(s) 203, 218, 262
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 255, 383
AsuHPI GGTGA 1 cut(s) 452
AvaII GGWCC 1 cut(s) 255
BalI TGGCCA 1 cut(s) 272
BamHI GGATCC 2 cut(s) 393, 454
BbvI GCAGC 1 cut(s) 396
BccI CCATC 3 cut(s) 38, 74, 107
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 2 cut(s) 200, 259
BfmI CTRYAG 1 cut(s) 410
BisI GCNGC 2 cut(s) 410, 493
BlsI GCNGC 2 cut(s) 411, 494
Bme1390I CCNGG 2 cut(s) 200, 259
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 255, 383
BmiI GGNNCC 3 cut(s) 256, 395, 456
BmrFI CCNGG 2 cut(s) 200, 259
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 133
BmuI ACTGGG 1 cut(s) 261
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 320, 477
Bse1I ACTGG 2 cut(s) 256, 461
BseBI CCWGG 2 cut(s) 200, 259
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 2 cut(s) 25, 118
BseLI CCNNNNNNNGG 3 cut(s) 36, 320, 477
BseNI ACTGG 2 cut(s) 256, 461
BseXI GCAGC 1 cut(s) 396
BseYI CCCAGC 1 cut(s) 168
BsgI GTGCAG 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 438
BshFI GGCC 3 cut(s) 272, 303, 384
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 3 cut(s) 36, 320, 477
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 2 cut(s) 84, 194
BsnI GGCC 3 cut(s) 272, 303, 384
Bsp143I GATC 2 cut(s) 393, 454
BspACI CCGC 2 cut(s) 438, 493
BspANI GGCC 3 cut(s) 272, 303, 384
BspFNI CGCG 1 cut(s) 438
BspLI GGNNCC 3 cut(s) 256, 395, 456
BspMAI CTGCAG 1 cut(s) 414
BspPI GGATC 4 cut(s) 388, 401, 449, 462
BsrI ACTGG 2 cut(s) 256, 461
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 393, 454
BssT1I CCWWGG 1 cut(s) 304
Bst2UI CCWGG 2 cut(s) 200, 259
BstF5I GGATG 2 cut(s) 25, 118
BstFNI CGCG 1 cut(s) 438
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 396, 457
BstMBI GATC 2 cut(s) 393, 454
BstMWI GCNNNNNNNGC 2 cut(s) 171, 435
BstNI CCWGG 2 cut(s) 200, 259
BstSCI CCNGG 2 cut(s) 198, 257
BstSFI CTRYAG 1 cut(s) 410
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 393, 454
BstYI RGATCY 2 cut(s) 393, 454
BsuRI GGCC 3 cut(s) 272, 303, 384
BtsCI GGATG 2 cut(s) 25, 118
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 2 cut(s) 255, 383
CviAII CATG 1 cut(s) 68
CviJI RGCY 7 cut(s) 211, 272, 303, 350, 384, 409, 487
CviKI_1 RGCY 7 cut(s) 211, 272, 303, 350, 384, 409, 487
DpnI GATC 2 cut(s) 395, 456
DpnII GATC 2 cut(s) 393, 454
EaeI YGGCCR 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 255
EcoRI GAATTC 2 cut(s) 203, 262
EcoRII CCWGG 2 cut(s) 198, 257
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 1 cut(s) 71
FaiI YATR 8 cut(s) 8, 63, 69, 110, 182, 331, 345, 500
FaqI GGGAC 1 cut(s) 268
FatI CATG 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 410, 493
FokI GGATG 2 cut(s) 32, 125
Fsp4HI GCNGC 2 cut(s) 410, 493
GlaI GCGC 1 cut(s) 173
GluI GCNGC 2 cut(s) 410, 493
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 3 cut(s) 272, 303, 384
HhaI GCGC 1 cut(s) 174
Hin1II CATG 1 cut(s) 71
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HinfI GANTC 1 cut(s) 467
HphI GGTGA 1 cut(s) 452
Hpy188I TCNGA 1 cut(s) 509
Hpy188III TCNNGA 1 cut(s) 391
Hpy99I CGWCG 1 cut(s) 438
HpyCH4V TGCA 5 cut(s) 67, 165, 216, 231, 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 435
Hsp92II CATG 1 cut(s) 71
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 393, 454
LmnI GCTCC 2 cut(s) 341, 363
Lsp1109I GCAGC 1 cut(s) 396
LweI GCATC 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 152
MalI GATC 2 cut(s) 395, 456
MboI GATC 2 cut(s) 393, 454
MboII GAAGA 1 cut(s) 228
MflI RGATCY 2 cut(s) 393, 454
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 5 cut(s) 89, 203, 218, 262, 481
MluNI TGGCCA 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 4 cut(s) 179, 407, 435, 468
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 272
MspR9I CCNGG 2 cut(s) 200, 259
Mva1269I GAATGC 2 cut(s) 84, 194
MvaI CCWGG 2 cut(s) 200, 259
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 171, 435
NdeII GATC 2 cut(s) 393, 454
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 3 cut(s) 256, 395, 456
NmuCI GTSAC 1 cut(s) 152
PctI GAATGC 2 cut(s) 84, 194
PfeI GAWTC 1 cut(s) 467
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 2 cut(s) 411, 494
PpuMI RGGWCCY 1 cut(s) 255
PsiI TTATAA 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 198, 257
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 2 cut(s) 198, 257
PspN4I GGNNCC 3 cut(s) 256, 395, 456
PspPI GGNCC 2 cut(s) 255, 383
PspPPI RGGWCCY 1 cut(s) 255
PstI CTGCAG 1 cut(s) 414
PsuI RGATCY 2 cut(s) 393, 454
SatI GCNGC 2 cut(s) 410, 493
Sau3AI GATC 2 cut(s) 393, 454
Sau96I GGNCC 2 cut(s) 255, 383
ScrFI CCNGG 2 cut(s) 200, 259
SetI ASST 5 cut(s) 190, 250, 260, 316, 506
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 410
SinI GGWCC 1 cut(s) 255
Sse9I AATT 5 cut(s) 89, 203, 218, 262, 481
SsiI CCGC 2 cut(s) 438, 493
StyD4I CCNGG 2 cut(s) 198, 257
StyI CCWWGG 1 cut(s) 304
TaqI TCGA 1 cut(s) 465
TasI AATT 5 cut(s) 89, 203, 218, 262, 481
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 1 cut(s) 467
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 409
Tsp45I GTSAC 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 3 cut(s) 203, 218, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.