Rmu_sc0007992.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007992.1
OG0000214
Physical Location & Seq
Forward (+)
42367 .. 45692
3326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007992.1_g000008.1.cds

Sequence Viewer

Length: 2379 bp
atggcatccaagaaaccattcgttatcgatcaggcaaatgaaatcactgagaaagccgcattcaactggcggactaacatgagtactcgatgtagacgtcaaaccggagaggagagaagtcgactgatgggctttggtggcggtgatagtcaagcgagtctgggtcccacacctcgcgatcgtttgccagacgatgctatagcctattatgggcttcccatccgccgtcccatagcggctcttcggcaagtgcctggtgattttagcagttggggaccaaggaggaaagtgggcttctggcctactgtcactcctgaggaaaatgtttggtatcaggagcccggcaccgctagccgccgctctttgcttctggaacacctccagcaatacattcgatttccggtttgggcagatgaccataactctgctggatgttcttaccatcaccggggcatcatagcaaatcctacccattctggtgcgactattactgcacccaacgagaccatacaggaggtatcgcattcctggaattctggctttgtaaatttatcttttgcacttcttccaacaaacctactgggccctagaattctctggccactgctctctacaatggtatttgcgttggccttgggcaacctgtattggatttatttccctcgcttccgtcgcaaggatattccaaaggaacctccagtcgattcccttttggggaactggctttgccgcaatgtaaggtatcaagctcctccctactccgagtgttttatttacttgtacttgctgggagaaatgccggacccaaaaatagtcctttctaggcgattccctcctccccttgatgatggatttctgcccagtggacgggatcatagtgaaagagccctcctggcctttcgtcgcgccatctcctgcttggatatttgtcttgccaccgactgcgtaagttatgaactctatgcccctaaccacttcgctagccaatttgggttggcccagttggtaccctggcctctggttgattctgccaattattacacctcttggcggagattagccccacctgggaccactgatccctctcgcctgagcgaagctggaccctcagccactgcaaaagagccaattctctcgctagttcaagcattaactaaccctgtggcacctttcccatctcccagatctacagagcatctgcaaggtcctaccatcctaataacgatttctgatgacgactcctcggagcatgaaagtgtggaaagccactctgaggcttctgctgcttatgaggaactgatgacgacagagattctcgcggcactagaggttcaagaggtgaatgaggcggggcctcttcctcttggtgaccacgtaccagatatcgacctgacagctcgagaggattctgtttgtaccgaggaggtggctgcaaatgctgctggtcttatcggagggacagtcgccccagagatggaaaatgatactaacggtggtggtaccccccaagtctcacaaacaaatgagacaaccgtcgaagctgagagctctgtgcttgaatctactccacttgcccatgtcgccccagagatagaaaatgatactaacggtggtggtaccccccaagtctcacaaacaaatgagacaaccgtcgaagctgagagctctgtgcttgaatctactccacttgcccatggtgagccgcgagttgagtttccagattcccctgaggctgaagggacagaccaacctgttgaagatgaagaaactgaggaagctgtccatccttttgcattggtggttcgtggtcctgtggcgcttctgccgcctccccctcctaccagattcgagagattgatgagggtgttggaggtaactcctccttctgctgtggatgaggctaaaatggtgcttcgtgaacatctaggtcctcaggtattggagactgacattctctcgcgaatcttagaagccctaaggtatctttgccaggagaaggtattgaccctgcagcaatttagtgctattgatgatctgttgaatgaacttggtagggctcgccgccatcaatcaacctgcgaacgccaggctcacaatgctcgagaggctttgaataacctttcccaagaaatggacatcccccgcgaagccctaaggtatctttgccaggagaaggtattgaccatgcagcaatttagtgctattgatgatctgttgaatgaacttggtagggctcgccgccatcaatcaaccgcgaacgcccaggctcacaatgctcgagaggctttgaataacctttcccaagaaatggacatcccccgcggtattttaaatgagcgagccaggccactcaggccgaagctggtgccattgcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

792

Amino Acids

87.79

Weight (kDa)

4.98

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 2084
Acc65I GGTACC 3 cut(s) 1006, 1499, 1616
AccB1I GGYRCC 6 cut(s) 344, 1006, 1165, 1499, 1616, 2365
AccB7I CCANNNNNTGG 2 cut(s) 2131, 2308
AccBSI CCGCTC 1 cut(s) 360
AccI GTMKAC 2 cut(s) 94, 121
AccII CGCG 8 cut(s) 177, 906, 1319, 1705, 1960, 2145, 2255, 2322
AclWI GGATC 2 cut(s) 879, 1073
AcoI YGGCCR 1 cut(s) 599
AcsI RAATTY 3 cut(s) 532, 547, 591
AcuI CTGAAG 1 cut(s) 1755
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 7 cut(s) 85, 782, 1008, 1377, 1417, 1501, 1618
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 9 cut(s) 749, 1100, 1397, 1541, 1548, 1658, 1665, 1778, 2362
AluI AGCT 9 cut(s) 749, 1100, 1397, 1541, 1548, 1658, 1665, 1778, 2362
Alw21I GWGCWC 2 cut(s) 1550, 1667
Alw26I GTCTC 6 cut(s) 497, 1516, 1520, 1633, 1637, 1937
AlwI GGATC 2 cut(s) 879, 1073
AlwNI CAGNNNCTG 1 cut(s) 1115
Ama87I CYCGRG 3 cut(s) 1398, 2100, 2277
ApaI GGGCCC 1 cut(s) 587
ApeKI GCWGC 5 cut(s) 1283, 1430, 1439, 2011, 2188
ApoI RAATTY 3 cut(s) 532, 547, 591
Asp700I GAANNNNTTC 1 cut(s) 17
Asp718I GGTACC 3 cut(s) 1006, 1499, 1616
AspLEI GCGC 2 cut(s) 908, 1819
AsuC2I CCSGG 2 cut(s) 342, 449
AsuHPI GGTGA 6 cut(s) 155, 269, 437, 1351, 1379, 1709
AsuNHI GCTAGC 2 cut(s) 350, 980
AvaI CYCGRG 3 cut(s) 1398, 2100, 2277
AvaII GGWCC 8 cut(s) 164, 275, 802, 1071, 1103, 1205, 1808, 1928
AxyI CCTNAGG 5 cut(s) 315, 1728, 1932, 1976, 2153
BaeGI GKGCMC 1 cut(s) 587
BalI TGGCCA 1 cut(s) 601
BanI GGYRCC 6 cut(s) 344, 1006, 1165, 1499, 1616, 2365
BanII GRGCYC 7 cut(s) 342, 587, 889, 1550, 1667, 2059, 2236
Bbv12I GWGCWC 2 cut(s) 1550, 1667
BbvCI CCTCAGC 1 cut(s) 1108
BbvI GCAGC 5 cut(s) 1270, 1417, 1426, 2023, 2200
BceAI ACGGC 1 cut(s) 210
BcgI CGANNNNNNTGC 3 cut(s) 374, 408, 2347
BcnI CCSGG 2 cut(s) 342, 449
BcoDI GTCTC 6 cut(s) 497, 1516, 1520, 1633, 1637, 1937
BfaI CTAG 7 cut(s) 351, 588, 822, 981, 1139, 1325, 1925
BfmI CTRYAG 3 cut(s) 198, 1188, 2009
BfoI RGCGCY 1 cut(s) 1820
BfuAI ACCTGC 1 cut(s) 2084
BglI GCCNNNNNGGC 2 cut(s) 893, 2353
BglII AGATCT 1 cut(s) 1184
BmcAI AGTACT 1 cut(s) 85
Bme18I GGWCC 8 cut(s) 164, 275, 802, 1071, 1103, 1205, 1808, 1928
BmeT110I CYCGRG 3 cut(s) 1398, 2100, 2277
BmrI ACTGGG 3 cut(s) 590, 855, 994
BmsI GCATC 4 cut(s) 14, 184, 462, 1204
BmtI GCTAGC 2 cut(s) 354, 984
BmuI ACTGGG 3 cut(s) 590, 855, 994
BoxI GACNNNNGTC 2 cut(s) 1532, 1649
BpmI CTGGAG 2 cut(s) 365, 681
Bpu10I CCTNAGC 2 cut(s) 1091, 1108
BpuMI CCSGG 2 cut(s) 342, 449
Bsa29I ATCGAT 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 1375
BsaHI GRCGYC 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 497
BsaWI WCCGGW 2 cut(s) 104, 400
BsaXI ACNNNNNCTCC 4 cut(s) 295, 325, 1446, 1476
Bse1I ACTGG 6 cut(s) 71, 585, 698, 725, 861, 1000
Bse21I CCTNAGG 5 cut(s) 315, 1728, 1932, 1976, 2153
Bse3DI GCAATG 2 cut(s) 739, 2369
BseCI ATCGAT 1 cut(s) 27
BseGI GGATG 8 cut(s) 5, 219, 437, 1212, 1783, 1900, 2136, 2313
BseMI GCAATG 2 cut(s) 739, 2369
BseNI ACTGG 6 cut(s) 71, 585, 698, 725, 861, 1000
BseRI GAGGAG 6 cut(s) 125, 741, 825, 1231, 1436, 1869
BseSI GKGCMC 1 cut(s) 587
BseXI GCAGC 5 cut(s) 1270, 1417, 1426, 2023, 2200
BseYI CCCAGC 1 cut(s) 787
BsgI GTGCAG 1 cut(s) 477
Bsh1236I CGCG 8 cut(s) 177, 906, 1319, 1705, 1960, 2145, 2255, 2322
Bsh1285I CGRYCG 1 cut(s) 181
BshNI GGYRCC 6 cut(s) 344, 1006, 1165, 1499, 1616, 2365
BshVI ATCGAT 1 cut(s) 27
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 2 cut(s) 1550, 1667
BsiHKCI CYCGRG 3 cut(s) 1398, 2100, 2277
BsiSI CCGG 5 cut(s) 105, 342, 401, 448, 800
BslFI GGGAC 6 cut(s) 150, 213, 288, 1084, 1471, 1753
BsmAI GTCTC 6 cut(s) 497, 1516, 1520, 1633, 1637, 1937
BsmFI GGGAC 6 cut(s) 150, 213, 288, 1084, 1471, 1753
BsmI GAATGC 2 cut(s) 59, 523
Bso31I GGTCTC 1 cut(s) 497
BsoBI CYCGRG 3 cut(s) 1398, 2100, 2277
Bsp120I GGGCCC 1 cut(s) 583
Bsp1286I GDGCHC 7 cut(s) 342, 587, 889, 1550, 1667, 2059, 2236
Bsp143I GATC 7 cut(s) 28, 178, 871, 1078, 1184, 2032, 2209
Bsp19I CCATGG 1 cut(s) 1693
Bsp68I TCGCGA 2 cut(s) 177, 1960
BspDI ATCGAT 1 cut(s) 27
BspFNI CGCG 8 cut(s) 177, 906, 1319, 1705, 1960, 2145, 2255, 2322
BspMAI CTGCAG 1 cut(s) 2013
BspMI ACCTGC 1 cut(s) 2084
BspOI GCTAGC 2 cut(s) 354, 984
BspPI GGATC 2 cut(s) 879, 1073
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 6 cut(s) 344, 1006, 1165, 1499, 1616, 2365
BspTNI GGTCTC 1 cut(s) 497
BsrBI CCGCTC 1 cut(s) 360
BsrDI GCAATG 2 cut(s) 739, 2369
BsrI ACTGG 6 cut(s) 71, 585, 698, 725, 861, 1000
BssMI GATC 7 cut(s) 28, 178, 871, 1078, 1184, 2032, 2209
BssNI GRCGYC 1 cut(s) 97
BssT1I CCWWGG 3 cut(s) 278, 633, 1693
Bst4CI ACNGT 6 cut(s) 307, 1462, 1493, 1534, 1610, 1651
Bst6I CTCTTC 2 cut(s) 246, 1362
BstACI GRCGYC 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 1439
BstBAI YACGTR 1 cut(s) 1375
BstC8I GCNNGC 5 cut(s) 352, 982, 2059, 2236, 2340
BstDSI CCRYGG 2 cut(s) 1693, 2320
BstEII GGTNACC 1 cut(s) 1367
BstF5I GGATG 8 cut(s) 5, 219, 437, 1212, 1783, 1900, 2136, 2313
BstFNI CGCG 8 cut(s) 177, 906, 1319, 1705, 1960, 2145, 2255, 2322
BstH2I RGCGCY 1 cut(s) 1820
BstHHI GCGC 2 cut(s) 908, 1819
BstKTI GATC 7 cut(s) 31, 181, 874, 1081, 1187, 2035, 2212
BstMAI GTCTC 6 cut(s) 497, 1516, 1520, 1633, 1637, 1937
BstMBI GATC 7 cut(s) 28, 178, 871, 1078, 1184, 2032, 2209
BstMCI CGRYCG 1 cut(s) 181
BstPAI GACNNNNGTC 2 cut(s) 1532, 1649
BstPI GGTNACC 1 cut(s) 1367
BstSFI CTRYAG 3 cut(s) 198, 1188, 2009
BstSLI GKGCMC 1 cut(s) 587
BstUI CGCG 8 cut(s) 177, 906, 1319, 1705, 1960, 2145, 2255, 2322
BstV1I GCAGC 5 cut(s) 1270, 1417, 1426, 2023, 2200
BstX2I RGATCY 1 cut(s) 1184
BstYI RGATCY 1 cut(s) 1184
Bsu15I ATCGAT 1 cut(s) 27
Bsu36I CCTNAGG 5 cut(s) 315, 1728, 1932, 1976, 2153
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 2 cut(s) 1693, 2320
BtsCI GGATG 8 cut(s) 5, 219, 437, 1212, 1783, 1900, 2136, 2313
BtsI GCAGTG 2 cut(s) 602, 1113
BtsIMutI CAGTG 5 cut(s) 45, 602, 868, 1074, 1113
BtuMI TCGCGA 2 cut(s) 177, 1960
BveI ACCTGC 1 cut(s) 2084
Cac8I GCNNGC 5 cut(s) 352, 982, 2059, 2236, 2340
CaiI CAGNNNCTG 1 cut(s) 1115
CfoI GCGC 2 cut(s) 908, 1819
Cfr42I CCGCGG 1 cut(s) 2323
ClaI ATCGAT 1 cut(s) 27
Csp6I GTAC 7 cut(s) 84, 781, 1007, 1376, 1416, 1500, 1617
CviAII CATG 5 cut(s) 79, 1250, 1577, 1694, 2185
CviQI GTAC 7 cut(s) 84, 781, 1007, 1376, 1416, 1500, 1617
DpnI GATC 7 cut(s) 30, 180, 873, 1080, 1186, 2034, 2211
DpnII GATC 7 cut(s) 28, 178, 871, 1078, 1184, 2032, 2209
DraI TTTAAA 1 cut(s) 2331
EaeI YGGCCR 1 cut(s) 599
Eam1104I CTCTTC 2 cut(s) 246, 1362
EarI CTCTTC 2 cut(s) 246, 1362
EciI GGCGGA 3 cut(s) 85, 212, 1066
Ecl136II GAGCTC 2 cut(s) 1548, 1665
Eco130I CCWWGG 3 cut(s) 278, 633, 1693
Eco24I GRGCYC 7 cut(s) 342, 587, 889, 1550, 1667, 2059, 2236
Eco31I GGTCTC 1 cut(s) 497
Eco32I GATATC 1 cut(s) 1384
Eco47I GGWCC 8 cut(s) 164, 275, 802, 1071, 1103, 1205, 1808, 1928
Eco53kI GAGCTC 2 cut(s) 1548, 1665
Eco57I CTGAAG 1 cut(s) 1755
Eco81I CCTNAGG 5 cut(s) 315, 1728, 1932, 1976, 2153
Eco88I CYCGRG 3 cut(s) 1398, 2100, 2277
Eco91I GGTNACC 1 cut(s) 1367
EcoICRI GAGCTC 2 cut(s) 1548, 1665
EcoO109I RGGNCCY 5 cut(s) 164, 584, 1205, 1352, 1928
EcoO65I GGTNACC 1 cut(s) 1367
EcoRI GAATTC 2 cut(s) 532, 591
EcoRV GATATC 1 cut(s) 1384
EcoT14I CCWWGG 3 cut(s) 278, 633, 1693
EcoT38I GRGCYC 7 cut(s) 342, 587, 889, 1550, 1667, 2059, 2236
ErhI CCWWGG 3 cut(s) 278, 633, 1693
FaeI CATG 5 cut(s) 82, 1253, 1580, 1697, 2188
FaqI GGGAC 6 cut(s) 150, 213, 288, 1084, 1471, 1753
FatI CATG 5 cut(s) 78, 1249, 1576, 1693, 2184
FauI CCCGC 3 cut(s) 1342, 2150, 2327
FblI GTMKAC 2 cut(s) 94, 121
FokI GGATG 7 cut(s) 206, 444, 1199, 1770, 1907, 2123, 2300
FriOI GRGCYC 7 cut(s) 342, 587, 889, 1550, 1667, 2059, 2236
FspBI CTAG 7 cut(s) 351, 588, 822, 981, 1139, 1325, 1925
GlaI GCGC 2 cut(s) 907, 1818
GsaI CCCAGC 1 cut(s) 791
GsuI CTGGAG 2 cut(s) 365, 681
HaeII RGCGCY 1 cut(s) 1820
HapII CCGG 5 cut(s) 105, 342, 401, 448, 800
HhaI GCGC 2 cut(s) 908, 1819
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 5 cut(s) 82, 1253, 1580, 1697, 2188
Hin6I GCGC 2 cut(s) 906, 1817
HinP1I GCGC 2 cut(s) 906, 1817
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HpaII CCGG 5 cut(s) 105, 342, 401, 448, 800
HphI GGTGA 6 cut(s) 155, 269, 437, 1351, 1379, 1709
Hpy166II GTNNAC 4 cut(s) 95, 122, 866, 1919
Hpy188I TCNGA 5 cut(s) 763, 1231, 1246, 1273, 1454
Hpy8I GTNNAC 4 cut(s) 95, 122, 866, 1919
Hpy99I CGWCG 4 cut(s) 675, 906, 1538, 1655
HpyAV CCTTC 4 cut(s) 1730, 1893, 1990, 2167
HpyCH4III ACNGT 6 cut(s) 307, 1462, 1493, 1534, 1610, 1651
HpyCH4IV ACGT 2 cut(s) 97, 1374
HpyCH4V TGCA 9 cut(s) 494, 560, 1118, 1201, 1433, 1793, 2011, 2188, 2374
HpySE526I ACGT 2 cut(s) 97, 1374
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 5 cut(s) 82, 1253, 1580, 1697, 2188
HspAI GCGC 2 cut(s) 906, 1817
KflI GGGWCCC 1 cut(s) 164
KpnI GGTACC 3 cut(s) 1010, 1503, 1620
KspI CCGCGG 1 cut(s) 2323
Kzo9I GATC 7 cut(s) 28, 178, 871, 1078, 1184, 2032, 2209
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 3 cut(s) 337, 754, 1246
Lsp1109I GCAGC 5 cut(s) 1270, 1417, 1426, 2023, 2200
LweI GCATC 4 cut(s) 14, 184, 462, 1204
MaeI CTAG 7 cut(s) 351, 588, 822, 981, 1139, 1325, 1925
MaeII ACGT 2 cut(s) 97, 1374
MaeIII GTNAC 3 cut(s) 307, 1367, 1873
MalI GATC 7 cut(s) 30, 180, 873, 1080, 1186, 2034, 2211
MbiI CCGCTC 1 cut(s) 360
MboI GATC 7 cut(s) 28, 178, 871, 1078, 1184, 2032, 2209
MboII GAAGA 5 cut(s) 233, 557, 1349, 1769, 1775
MflI RGATCY 1 cut(s) 1184
MhlI GDGCHC 7 cut(s) 342, 587, 889, 1550, 1667, 2059, 2236
MlsI TGGCCA 1 cut(s) 601
MluCI AATT 8 cut(s) 532, 547, 591, 986, 1033, 1128, 2015, 2192
MluNI TGGCCA 1 cut(s) 601
MlyI GAGTC 2 cut(s) 166, 1232
MmeI TCCRAC 2 cut(s) 593, 1848
Mox20I TGGCCA 1 cut(s) 601
MroXI GAANNNNTTC 1 cut(s) 17
MscI TGGCCA 1 cut(s) 601
MseI TTAA 2 cut(s) 1151, 2330
MslI CAYNNNNRTG 3 cut(s) 477, 1254, 2374
Msp20I TGGCCA 1 cut(s) 601
MspA1I CMGCKG 1 cut(s) 2322
MspI CCGG 5 cut(s) 105, 342, 401, 448, 800
Mva1269I GAATGC 2 cut(s) 59, 523
MvnI CGCG 8 cut(s) 177, 906, 1319, 1705, 1960, 2145, 2255, 2322
NciI CCSGG 2 cut(s) 342, 449
NcoI CCATGG 1 cut(s) 1693
NdeII GATC 7 cut(s) 28, 178, 871, 1078, 1184, 2032, 2209
NheI GCTAGC 2 cut(s) 350, 980
NlaIII CATG 5 cut(s) 82, 1253, 1580, 1697, 2188
NmuCI GTSAC 2 cut(s) 307, 1367
NruI TCGCGA 2 cut(s) 177, 1960
PaeR7I CTCGAG 3 cut(s) 1398, 2100, 2277
PciSI GCTCTTC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PctI GAATGC 2 cut(s) 59, 523
PdmI GAANNNNTTC 1 cut(s) 17
PflMI CCANNNNNTGG 2 cut(s) 2131, 2308
PfoI TCCNGGA 1 cut(s) 527
Ple19I CGATCG 1 cut(s) 181
PleI GAGTC 2 cut(s) 165, 1232
PpsI GAGTC 2 cut(s) 165, 1232
Ppu21I YACGTR 1 cut(s) 1375
PpuMI RGGWCCY 3 cut(s) 164, 1205, 1928
PshAI GACNNNNGTC 2 cut(s) 1532, 1649
Psp124BI GAGCTC 2 cut(s) 1550, 1667
Psp5II RGGWCCY 3 cut(s) 164, 1205, 1928
PspEI GGTNACC 1 cut(s) 1367
PspFI CCCAGC 1 cut(s) 787
PspOMI GGGCCC 1 cut(s) 583
PspPPI RGGWCCY 3 cut(s) 164, 1205, 1928
PstI CTGCAG 1 cut(s) 2013
PstNI CAGNNNCTG 1 cut(s) 1115
PsuI RGATCY 1 cut(s) 1184
PvuI CGATCG 1 cut(s) 181
RruI TCGCGA 2 cut(s) 177, 1960
RsaI GTAC 7 cut(s) 85, 782, 1008, 1377, 1417, 1501, 1618
RsaNI GTAC 7 cut(s) 84, 781, 1007, 1376, 1416, 1500, 1617
RseI CAYNNNNRTG 3 cut(s) 477, 1254, 2374
SacI GAGCTC 2 cut(s) 1550, 1667
SacII CCGCGG 1 cut(s) 2323
SalI GTCGAC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 1151, 2330
Sau3AI GATC 7 cut(s) 28, 178, 871, 1078, 1184, 2032, 2209
ScaI AGTACT 1 cut(s) 85
SchI GAGTC 2 cut(s) 166, 1232
SduI GDGCHC 7 cut(s) 342, 587, 889, 1550, 1667, 2059, 2236
SfaNI GCATC 4 cut(s) 14, 184, 462, 1204
SfcI CTRYAG 3 cut(s) 198, 1188, 2009
SfiI GGCCNNNNNGGCC 1 cut(s) 2353
Sfr274I CTCGAG 3 cut(s) 1398, 2100, 2277
Sfr303I CCGCGG 1 cut(s) 2323
SgrBI CCGCGG 1 cut(s) 2323
SinI GGWCC 8 cut(s) 164, 275, 802, 1071, 1103, 1205, 1808, 1928
SlaI CTCGAG 3 cut(s) 1398, 2100, 2277
SmiMI CAYNNNNRTG 3 cut(s) 477, 1254, 2374
SmlI CTYRAG 3 cut(s) 1398, 2100, 2277
SmoI CTYRAG 3 cut(s) 1398, 2100, 2277
Sse9I AATT 8 cut(s) 532, 547, 591, 986, 1033, 1128, 2015, 2192
SspMI CTAG 7 cut(s) 351, 588, 822, 981, 1139, 1325, 1925
SstI GAGCTC 2 cut(s) 1550, 1667
StyI CCWWGG 3 cut(s) 278, 633, 1693
TaaI ACNGT 6 cut(s) 307, 1462, 1493, 1534, 1610, 1651
TaiI ACGT 2 cut(s) 100, 1377
TasI AATT 8 cut(s) 532, 547, 591, 986, 1033, 1128, 2015, 2192
TatI WGTACW 2 cut(s) 83, 780
Tru1I TTAA 2 cut(s) 1151, 2330
Tru9I TTAA 2 cut(s) 1151, 2330
TscAI CASTG 5 cut(s) 52, 609, 868, 1081, 1120
TseFI GTSAC 2 cut(s) 307, 1367
TseI GCWGC 5 cut(s) 1283, 1430, 1439, 2011, 2188
Tsp45I GTSAC 2 cut(s) 307, 1367
TspDTI ATGAA 6 cut(s) 54, 969, 1266, 1776, 2058, 2235
TspGWI ACGGA 1 cut(s) 659
TspRI CASTG 5 cut(s) 52, 609, 868, 1081, 1120
Van91I CCANNNNNTGG 2 cut(s) 2131, 2308
VpaK11BI GGWCC 8 cut(s) 164, 275, 802, 1071, 1103, 1205, 1808, 1928
XapI RAATTY 3 cut(s) 532, 547, 591
XcmI CCANNNNNNNNNTGG 2 cut(s) 425, 916
XhoI CTCGAG 3 cut(s) 1398, 2100, 2277
XmiI GTMKAC 2 cut(s) 94, 121
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 7 cut(s) 351, 588, 822, 981, 1139, 1325, 1925
ZraI GACGTC 1 cut(s) 98
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.