Rroxscaffold_6G00408530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000214
Physical Location & Seq
Forward (+)
31010383 .. 31011229
847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00408530.1

Sequence Viewer

Length: 306 bp
ATGGTATTTGCGTTGGCTTTGGGCAACTTTGTATTGGCGATTCCCCATAGGGTCGGAGCGTTGTACACCCTCAACAATGTCGACGATGATTATGCTGATTGGTGGAAAGAAGTATCCTTGAACTGTTGGGACATGCCATATGACGAACTCTTTGCCTTAATCTTTCGTGGCATGAGTAGTCTTGGACCGGAAGACCGCGAGATTCTTGAGCGCTTATCCAATCTGCAAGCACAACCCTCGCGACCTATTCTACCTTCTTGCTCATCGCGTCCGGGGATACAAATCGCGAGCTTGGGGCAACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.38

Weight (kDa)

4.72

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AccII CGCG 4 cut(s) 198, 241, 268, 287
AciI CCGC 1 cut(s) 196
AfaI GTAC 1 cut(s) 65
AfeI AGCGCT 1 cut(s) 212
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Aor51HI AGCGCT 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 198
BcgI CGANNNNNNTGC 6 cut(s) 74, 108, 134, 168, 219, 253
BciVI GTATCC 2 cut(s) 124, 270
BcnI CCSGG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 214
BfuI GTATCC 2 cut(s) 124, 270
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 273
BsaBI GATNNNNATC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 272
BseJI GATNNNNATC 1 cut(s) 281
Bsh1236I CGCG 4 cut(s) 198, 241, 268, 287
BsiSI CCGG 2 cut(s) 188, 272
BslFI GGGAC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 63
Bsp68I TCGCGA 2 cut(s) 241, 287
BspACI CCGC 1 cut(s) 196
BspFNI CGCG 4 cut(s) 198, 241, 268, 287
BsrGI TGTACA 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 125, 303
BstAUI TGTACA 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 228, 289
BstFNI CGCG 4 cut(s) 198, 241, 268, 287
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 271
BstUI CGCG 4 cut(s) 198, 241, 268, 287
BstV2I GAAGAC 1 cut(s) 198
BsuI GTATCC 2 cut(s) 124, 270
BtgZI GCGATG 1 cut(s) 249
BtuMI TCGCGA 2 cut(s) 241, 287
Cac8I GCNNGC 2 cut(s) 228, 289
CfoI GCGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 64
CviAII CATG 2 cut(s) 133, 172
CviJI RGCY 2 cut(s) 17, 291
CviKI_1 RGCY 2 cut(s) 17, 291
CviQI GTAC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 185
Eco47III AGCGCT 1 cut(s) 212
FaeI CATG 2 cut(s) 136, 175
FaiI YATR 6 cut(s) 48, 93, 134, 139, 141, 173
FaqI GGGAC 1 cut(s) 143
FatI CATG 2 cut(s) 132, 171
FauNDI CATATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 81
GlaI GCGC 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 214
HapII CCGG 2 cut(s) 188, 272
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 213
Hin1II CATG 2 cut(s) 136, 175
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 2 cut(s) 40, 202
HpaII CCGG 2 cut(s) 188, 272
Hpy166II GTNNAC 2 cut(s) 66, 82
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 3 cut(s) 206, 240, 286
Hpy8I GTNNAC 2 cut(s) 66, 82
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 264
HpyCH4III ACNGT 2 cut(s) 125, 303
HpyCH4V TGCA 1 cut(s) 226
Hsp92II CATG 2 cut(s) 136, 175
HspAI GCGC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 2 cut(s) 201, 285
MboII GAAGA 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 2 cut(s) 80, 247
MseI TTAA 1 cut(s) 158
MspI CCGG 2 cut(s) 188, 272
MspR9I CCNGG 1 cut(s) 273
MvnI CGCG 4 cut(s) 198, 241, 268, 287
NciI CCSGG 1 cut(s) 273
NdeI CATATG 1 cut(s) 139
NlaIII CATG 2 cut(s) 136, 175
NruI TCGCGA 2 cut(s) 241, 287
NspI RCATGY 1 cut(s) 136
PfeI GAWTC 2 cut(s) 40, 202
PspPI GGNCC 1 cut(s) 185
RruI TCGCGA 2 cut(s) 241, 287
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 158
Sau96I GGNCC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 273
SetI ASST 3 cut(s) 247, 256, 293
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SsiI CCGC 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 125, 303
TaqI TCGA 1 cut(s) 81
TatI WGTACW 1 cut(s) 63
TfiI GAWTC 2 cut(s) 40, 202
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 185
XceI RCATGY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.