Rmu_sc0001563.1_g000014

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001563.1
OG0000214
Physical Location & Seq
Forward (+)
62812 .. 63684
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001563.1_g000014.1.cds

Sequence Viewer

Length: 873 bp
atgggctttggtggcggtgatagtcaagcgattctgggtcccacacctcgcgatcgtttgctagatgatgctatggcctattatgggcttcccatccgccgtcccatagcggctctacggcaggtgcctggtgattttagcagttggagaccaaggaggaaagtgggcttctggcctaccatcgctcccgaggaaaaggtttggtatcaggaggtccgagcgagagatttggcccgatgggatgcggtgggtatcacccaaaccatcgatctatgcttctgtcttccccataatactagccctgcaccgctagcagccgctctttgcttctggaacacctccagcaaggcattcgatttccgatttgggcagatgagcataactctgctggatgttcttaccatcacggggttgcccattgactttgacccctatgtgcaaggtcagtttgatggcattcaattttctttgagaatggatatggctggtcgggggcatcacagcagatcctacccaatctggcacgactattactgcacccagcgtgaccatgcaggaggtatttcattcttggaattctggctttgcaaatttatcttttgcatttcttcgaacaaacctactgggccttggaattctctggccactgctctctacaatggtacttgcgttggccttgggcaacctgtattgggtgcgttatatcgctccctttatagagccataatgcgcccctttgataccgacattagtagccctttctggatccttgccttttggctgcagatttatttccctcgcttctgtcgcagtcatattccaaaggaacctccagtcgattcccttttgggaactggatctgcggcaacgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

290

Amino Acids

32.71

Weight (kDa)

8.41

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 320
AccII CGCG 1 cut(s) 51
AciI CCGC 7 cut(s) 15, 97, 110, 245, 308, 318, 863
AclWI GGATC 4 cut(s) 501, 760, 773, 865
AcoI YGGCCR 1 cut(s) 642
AcsI RAATTY 3 cut(s) 575, 590, 634
AfaI GTAC 1 cut(s) 664
AfiI CCNNNNNNNGG 3 cut(s) 84, 408, 692
AgsI TTSAA 1 cut(s) 461
AjnI CCWGG 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 4 cut(s) 501, 760, 773, 865
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 6 cut(s) 75, 173, 231, 626, 642, 673
ApeKI GCWGC 2 cut(s) 314, 781
ApoI RAATTY 3 cut(s) 575, 590, 634
AspLEI GCGC 1 cut(s) 732
AspS9I GGNCC 4 cut(s) 38, 214, 232, 626
AsuHPI GGTGA 3 cut(s) 29, 143, 247
AsuII TTCGAA 1 cut(s) 611
AsuNHI GCTAGC 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 2 cut(s) 38, 214
BaeI ACNNNNGTAYC 2 cut(s) 654, 687
BalI TGGCCA 1 cut(s) 644
BamHI GGATCC 1 cut(s) 765
BanI GGYRCC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 326, 768
BccI CCATC 6 cut(s) 101, 188, 231, 272, 410, 446
BceAI ACGGC 2 cut(s) 84, 134
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 3 cut(s) 62, 297, 311
BfmI CTRYAG 1 cut(s) 782
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 5 cut(s) 111, 315, 318, 782, 864
BlsI GCNGC 5 cut(s) 112, 316, 319, 783, 865
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 2 cut(s) 38, 214
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 4 cut(s) 38, 214, 232, 626
BmiI GGNNCC 5 cut(s) 39, 40, 126, 767, 828
BmrFI CCNGG 1 cut(s) 129
BmrI ACTGGG 1 cut(s) 633
BmsI GCATC 3 cut(s) 58, 232, 505
BmtI GCTAGC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 633
BpiI GAAGAC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BpmI CTGGAG 2 cut(s) 325, 816
Bpu14I TTCGAA 1 cut(s) 611
Bsa29I ATCGAT 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 4 cut(s) 152, 189, 629, 676
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 408, 692
Bse1I ACTGG 3 cut(s) 628, 833, 859
BseBI CCWGG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 4 cut(s) 152, 189, 629, 676
BseGI GGATG 3 cut(s) 93, 247, 397
BseLI CCNNNNNNNGG 3 cut(s) 84, 408, 692
BseNI ACTGG 3 cut(s) 628, 833, 859
BseXI GCAGC 2 cut(s) 326, 768
BseYI CCCAGC 1 cut(s) 540
BsgI GTGCAG 2 cut(s) 288, 520
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 6 cut(s) 77, 175, 233, 628, 644, 675
BshNI GGYRCC 1 cut(s) 124
BshVI ATCGAT 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 188
BslFI GGGAC 2 cut(s) 24, 87
BslI CCNNNNNNNGG 3 cut(s) 84, 408, 692
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 2 cut(s) 24, 87
BsmI GAATGC 2 cut(s) 350, 456
BsnI GGCC 6 cut(s) 77, 175, 233, 628, 644, 675
Bso31I GGTCTC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 611
Bsp143I GATC 5 cut(s) 52, 268, 506, 765, 857
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 7 cut(s) 15, 97, 110, 245, 308, 318, 863
BspANI GGCC 6 cut(s) 77, 175, 233, 628, 644, 675
BspDI ATCGAT 1 cut(s) 267
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 5 cut(s) 39, 40, 126, 767, 828
BspMAI CTGCAG 1 cut(s) 786
BspMI ACCTGC 1 cut(s) 112
BspOI GCTAGC 1 cut(s) 314
BspPI GGATC 4 cut(s) 501, 760, 773, 865
BspT104I TTCGAA 1 cut(s) 611
BspT107I GGYRCC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 142
BsrBI CCGCTC 1 cut(s) 320
BsrI ACTGG 3 cut(s) 628, 833, 859
BssECI CCNNGG 4 cut(s) 152, 189, 629, 676
BssMI GATC 5 cut(s) 52, 268, 506, 765, 857
BssT1I CCWWGG 3 cut(s) 152, 629, 676
Bst2UI CCWGG 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 312
BstF5I GGATG 3 cut(s) 93, 247, 397
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 732
BstKTI GATC 5 cut(s) 55, 271, 509, 768, 860
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 5 cut(s) 52, 268, 506, 765, 857
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 3 cut(s) 12, 311, 807
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 782
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 326, 768
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 3 cut(s) 506, 765, 857
BstYI RGATCY 3 cut(s) 506, 765, 857
Bsu15I ATCGAT 1 cut(s) 267
BsuRI GGCC 6 cut(s) 77, 175, 233, 628, 644, 675
BsuTUI ATCGAT 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 3 cut(s) 93, 247, 397
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 1 cut(s) 645
BtuMI TCGCGA 1 cut(s) 51
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 1 cut(s) 732
Cfr13I GGNCC 4 cut(s) 38, 214, 232, 626
ClaI ATCGAT 1 cut(s) 267
Csp6I GTAC 1 cut(s) 663
CviAII CATG 1 cut(s) 551
CviQI GTAC 1 cut(s) 663
DpnI GATC 5 cut(s) 54, 270, 508, 767, 859
DpnII GATC 5 cut(s) 52, 268, 506, 765, 857
EaeI YGGCCR 1 cut(s) 642
EciI GGCGGA 1 cut(s) 86
Eco130I CCWWGG 3 cut(s) 152, 629, 676
Eco31I GGTCTC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 38, 214
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 2 cut(s) 575, 634
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 3 cut(s) 152, 629, 676
ErhI CCWWGG 3 cut(s) 152, 629, 676
FaeI CATG 1 cut(s) 554
FaqI GGGAC 2 cut(s) 24, 87
FatI CATG 1 cut(s) 550
Fnu4HI GCNGC 5 cut(s) 111, 315, 318, 782, 864
FokI GGATG 3 cut(s) 80, 254, 404
Fsp4HI GCNGC 5 cut(s) 111, 315, 318, 782, 864
FspBI CTAG 3 cut(s) 62, 297, 311
GlaI GCGC 1 cut(s) 731
GluI GCNGC 5 cut(s) 111, 315, 318, 782, 864
GsaI CCCAGC 1 cut(s) 544
GsuI CTGGAG 2 cut(s) 325, 816
HaeIII GGCC 6 cut(s) 77, 175, 233, 628, 644, 675
HhaI GCGC 1 cut(s) 732
Hin1II CATG 1 cut(s) 554
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HinfI GANTC 2 cut(s) 31, 839
HphI GGTGA 3 cut(s) 29, 143, 247
Hpy188I TCNGA 2 cut(s) 218, 362
Hpy188III TCNNGA 5 cut(s) 50, 188, 209, 331, 763
HpyCH4IV ACGT 1 cut(s) 869
HpyCH4V TGCA 7 cut(s) 305, 439, 537, 554, 588, 603, 784
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 311, 807
HpySE526I ACGT 1 cut(s) 869
Hsp92II CATG 1 cut(s) 554
HspAI GCGC 1 cut(s) 730
KflI GGGWCCC 1 cut(s) 38
Kzo9I GATC 5 cut(s) 52, 268, 506, 765, 857
LmnI GCTCC 2 cut(s) 190, 713
Lsp1109I GCAGC 2 cut(s) 326, 768
LweI GCATC 3 cut(s) 58, 232, 505
MaeI CTAG 3 cut(s) 62, 297, 311
MaeII ACGT 1 cut(s) 869
MaeIII GTNAC 1 cut(s) 545
MalI GATC 5 cut(s) 54, 270, 508, 767, 859
MbiI CCGCTC 1 cut(s) 320
MboI GATC 5 cut(s) 52, 268, 506, 765, 857
MboII GAAGA 2 cut(s) 275, 600
MflI RGATCY 3 cut(s) 506, 765, 857
MlsI TGGCCA 1 cut(s) 644
MluCI AATT 4 cut(s) 461, 575, 590, 634
MluNI TGGCCA 1 cut(s) 644
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 8 cut(s) 57, 150, 184, 205, 349, 551, 807, 840
Mox20I TGGCCA 1 cut(s) 644
MscI TGGCCA 1 cut(s) 644
Msp20I TGGCCA 1 cut(s) 644
MspR9I CCNGG 1 cut(s) 129
Mva1269I GAATGC 2 cut(s) 350, 456
MvaI CCWGG 1 cut(s) 129
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 3 cut(s) 12, 311, 807
NdeII GATC 5 cut(s) 52, 268, 506, 765, 857
NheI GCTAGC 1 cut(s) 310
NlaIII CATG 1 cut(s) 554
NlaIV GGNNCC 5 cut(s) 39, 40, 126, 767, 828
NmuCI GTSAC 1 cut(s) 545
NruI TCGCGA 1 cut(s) 51
NspV TTCGAA 1 cut(s) 611
PaqCI CACCTGC 1 cut(s) 112
PctI GAATGC 2 cut(s) 350, 456
PfeI GAWTC 2 cut(s) 31, 839
PkrI GCNGC 5 cut(s) 112, 316, 319, 783, 865
Ple19I CGATCG 1 cut(s) 55
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 540
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 5 cut(s) 39, 40, 126, 767, 828
PspPI GGNCC 4 cut(s) 38, 214, 232, 626
PspPPI RGGWCCY 1 cut(s) 38
PstI CTGCAG 1 cut(s) 786
PsuI RGATCY 3 cut(s) 506, 765, 857
PvuI CGATCG 1 cut(s) 55
RruI TCGCGA 1 cut(s) 51
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
SatI GCNGC 5 cut(s) 111, 315, 318, 782, 864
Sau3AI GATC 5 cut(s) 52, 268, 506, 765, 857
Sau96I GGNCC 4 cut(s) 38, 214, 232, 626
ScrFI CCNGG 1 cut(s) 129
SfaNI GCATC 3 cut(s) 58, 232, 505
SfcI CTRYAG 1 cut(s) 782
SfuI TTCGAA 1 cut(s) 611
SinI GGWCC 2 cut(s) 38, 214
Sse9I AATT 4 cut(s) 461, 575, 590, 634
SsiI CCGC 7 cut(s) 15, 97, 110, 245, 308, 318, 863
SspMI CTAG 3 cut(s) 62, 297, 311
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 3 cut(s) 152, 629, 676
TaiI ACGT 1 cut(s) 872
TaqI TCGA 4 cut(s) 267, 354, 611, 837
TasI AATT 4 cut(s) 461, 575, 590, 634
TauI GCSGC 3 cut(s) 113, 320, 866
TfiI GAWTC 2 cut(s) 31, 839
TscAI CASTG 1 cut(s) 652
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 2 cut(s) 314, 781
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 1 cut(s) 555
TspRI CASTG 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 38, 214
XapI RAATTY 3 cut(s) 575, 590, 634
XspI CTAG 3 cut(s) 62, 297, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.