Rh3DG208400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000214
Physical Location & Seq
Forward (+)
19173921 .. 19210001
36081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG208400.1

Sequence Viewer

Length: 639 bp
ATGGGTCTTGGTCGTTCGTTTGAGAGCGAGAATGAGTCTGGTGGTGTAGTTGTGGGTATGCAAACTACCCAGAGCAAGACAACCTCTGTTCAAGCCGGGAAACAAAAGGCATTAGTAGAGGAGAATCCTAATGGAGAGTCTTCTCATGATGAAGATCCCGCTGAGAAAGTCGGAGGCTTGTCCGCCGGCGCCTCCGCGACGAATGTGGCTTCTCGCCTCGTCGGACGGGCCATGGTGATGGTGAAGCACCGACTCGTTTTCTTTTCTTCTCAGTTGTTGGTGACGGCTGCTGCGGGGTTGCTCTTTATATCTTCGATTTATCGGCTCACAGCGATTCGTCTCTTCCATTCCGACCTCCGACGACCACCACCTCCATTATCAACACAAAGCAAAGCCCAGGACACGAGCATAACTCTCCAGGTCACAGTCGAAGTTTACAACAGGTTCTGCTCTGCTTTTATACAATGGCTGGAGCATTGGATGCGCCAGAATGAGAAAACCTGGAGTATAATTCAATTGCCACAAGTTCAATGGACTGTTAGCAACCTTTCCAATATGAATATGGGAGACAGAGTTTGGTCCTTTAATCTCTGTGGAAAACACAATCAACATGTAAAACCCATCACCATCACCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.45

Weight (kDa)

9.26

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AccII CGCG 1 cut(s) 197
AciI CCGC 4 cut(s) 159, 183, 195, 293
AclWI GGATC 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 3 cut(s) 92, 515, 530
AjnI CCWGG 3 cut(s) 396, 417, 500
Alw26I GTCTC 2 cut(s) 344, 561
AlwI GGATC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 447
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 287, 290
AspLEI GCGC 2 cut(s) 191, 486
AspS9I GGNCC 2 cut(s) 228, 579
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 5 cut(s) 247, 253, 292, 616, 622
AvaII GGWCC 1 cut(s) 579
BanI GGYRCC 1 cut(s) 188
BauI CACGAG 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 274, 277
BccI CCATC 3 cut(s) 232, 629, 635
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 3 cut(s) 398, 419, 502
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 344, 561
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 2 cut(s) 288, 291
BlsI GCNGC 2 cut(s) 289, 292
Bme1390I CCNGG 4 cut(s) 97, 398, 419, 502
Bme18I GGWCC 1 cut(s) 579
BmgT120I GGNCC 2 cut(s) 228, 579
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 4 cut(s) 97, 398, 419, 502
BmsI GCATC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 397, 429
BpmI CTGGAG 3 cut(s) 401, 491, 523
BpuMI CCSGG 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 231, 396
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bse118I RCCGGY 1 cut(s) 185
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 3 cut(s) 398, 419, 502
BseDI CCNNGG 2 cut(s) 231, 396
BseGI GGATG 1 cut(s) 486
BseJI GATNNNNATC 1 cut(s) 153
BseMII CTCAG 2 cut(s) 153, 284
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 274, 277
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 230
BshNI GGYRCC 1 cut(s) 188
BsiSI CCGG 2 cut(s) 96, 186
BsmAI GTCTC 2 cut(s) 344, 561
BsmBI CGTCTC 1 cut(s) 344
BsnI GGCC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 154
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 4 cut(s) 159, 183, 195, 293
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 2 cut(s) 154, 283
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 231, 396
BssMI GATC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 403
BssT1I CCWWGG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 403
Bst2UI CCWGG 3 cut(s) 398, 419, 502
Bst4CI ACNGT 2 cut(s) 427, 538
Bst6I CTCTTC 1 cut(s) 347
BstACI GRCGYC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 481
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 162, 270
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 486
BstFNI CGCG 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 191, 486
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 2 cut(s) 344, 561
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 481
BstNI CCWGG 3 cut(s) 398, 419, 502
BstNSI RCATGY 1 cut(s) 614
BstSCI CCNGG 4 cut(s) 95, 396, 417, 500
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 274, 277
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 1 cut(s) 230
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 486
Cac8I GCNNGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 447
CciI TCATGA 1 cut(s) 145
CfoI GCGC 2 cut(s) 191, 486
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 228, 579
CviAII CATG 3 cut(s) 146, 232, 611
CviJI RGCY 8 cut(s) 95, 177, 209, 230, 287, 325, 395, 469
CviKI_1 RGCY 8 cut(s) 95, 177, 209, 230, 287, 325, 395, 469
DdeI CTNAG 2 cut(s) 162, 270
DinI GGCGCC 1 cut(s) 190
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
EciI GGCGGA 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 579
EcoRII CCWGG 3 cut(s) 396, 417, 500
EcoT14I CCWWGG 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 190
EheI GGCGCC 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 3 cut(s) 149, 235, 614
FatI CATG 3 cut(s) 145, 231, 610
FauI CCCGC 2 cut(s) 166, 286
Fnu4HI GCNGC 2 cut(s) 288, 291
FokI GGATG 1 cut(s) 493
Fsp4HI GCNGC 2 cut(s) 288, 291
GlaI GCGC 2 cut(s) 190, 485
GluI GCNGC 2 cut(s) 288, 291
GsuI CTGGAG 3 cut(s) 401, 491, 523
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 1 cut(s) 230
HapII CCGG 2 cut(s) 96, 186
HhaI GCGC 2 cut(s) 191, 486
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 3 cut(s) 149, 235, 614
Hin6I GCGC 2 cut(s) 189, 484
HinP1I GCGC 2 cut(s) 189, 484
HinfI GANTC 5 cut(s) 35, 124, 137, 252, 334
HpaII CCGG 2 cut(s) 96, 186
HphI GGTGA 5 cut(s) 247, 253, 292, 616, 622
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 4 cut(s) 173, 224, 352, 359
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 436
Hpy99I CGWCG 3 cut(s) 202, 224, 363
HpyCH4III ACNGT 2 cut(s) 427, 538
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 481
HpyF3I CTNAG 2 cut(s) 162, 270
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 3 cut(s) 149, 235, 614
HspAI GCGC 2 cut(s) 189, 484
KasI GGCGCC 1 cut(s) 188
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 2 cut(s) 274, 277
LweI GCATC 1 cut(s) 471
MaeIII GTNAC 2 cut(s) 280, 421
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 5 cut(s) 132, 164, 258, 303, 334
MfeI CAATTG 1 cut(s) 515
MflI RGATCY 1 cut(s) 154
MluCI AATT 2 cut(s) 510, 515
Mly113I GGCGCC 1 cut(s) 189
MlyI GAGTC 3 cut(s) 44, 146, 246
MmeI TCCRAC 4 cut(s) 151, 202, 375, 382
MnlI CCTC 7 cut(s) 94, 112, 167, 202, 227, 365, 381
MreI CGCCGGCG 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 185
MseI TTAA 2 cut(s) 585, 637
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 2 cut(s) 96, 186
MspR9I CCNGG 4 cut(s) 97, 398, 419, 502
MunI CAATTG 1 cut(s) 515
MvaI CCWGG 3 cut(s) 398, 419, 502
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 481
NaeI GCCGGC 1 cut(s) 187
NarI GGCGCC 1 cut(s) 189
NciI CCSGG 1 cut(s) 97
NcoI CCATGG 1 cut(s) 231
NdeII GATC 1 cut(s) 154
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 3 cut(s) 149, 235, 614
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 280, 421
NspI RCATGY 1 cut(s) 614
PagI TCATGA 1 cut(s) 145
PciI ACATGT 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 187
PfeI GAWTC 2 cut(s) 124, 334
PkrI GCNGC 2 cut(s) 289, 292
PleI GAGTC 3 cut(s) 43, 145, 246
PluTI GGCGCC 1 cut(s) 192
PpsI GAGTC 3 cut(s) 43, 145, 246
PscI ACATGT 1 cut(s) 610
Psp6I CCWGG 3 cut(s) 396, 417, 500
PspGI CCWGG 3 cut(s) 396, 417, 500
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 228, 579
PstNI CAGNNNCTG 1 cut(s) 447
PsuI RGATCY 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 2 cut(s) 585, 637
SatI GCNGC 2 cut(s) 288, 291
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 2 cut(s) 228, 579
SchI GAGTC 3 cut(s) 44, 146, 246
ScrFI CCNGG 4 cut(s) 97, 398, 419, 502
SetI ASST 7 cut(s) 86, 357, 373, 423, 446, 503, 549
SfaNI GCATC 1 cut(s) 471
SfoI GGCGCC 1 cut(s) 190
SgrAI CRCCGGYG 1 cut(s) 185
SinI GGWCC 1 cut(s) 579
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 2 cut(s) 510, 515
SsiI CCGC 4 cut(s) 159, 183, 195, 293
SspDI GGCGCC 1 cut(s) 188
StyD4I CCNGG 4 cut(s) 95, 396, 417, 500
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 427, 538
TaqI TCGA 2 cut(s) 314, 429
TasI AATT 2 cut(s) 510, 515
TfiI GAWTC 2 cut(s) 124, 334
Tru1I TTAA 2 cut(s) 585, 637
Tru9I TTAA 2 cut(s) 585, 637
TseFI GTSAC 2 cut(s) 280, 421
TseI GCWGC 2 cut(s) 287, 290
Tsp45I GTSAC 2 cut(s) 280, 421
TspDTI ATGAA 2 cut(s) 165, 572
VpaK11BI GGWCC 1 cut(s) 579
XceI RCATGY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 2 cut(s) 528, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.