Rmu_sc0003402.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003402.1
OG0000214
Physical Location & Seq
Forward (+)
22755 .. 25480
2726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003402.1_g000005.1.cds

Sequence Viewer

Length: 1956 bp
atgagcataactctgctgaatgttcttaccatcacgtggttgcccattgactttgacccctacgtgcatggtcagtttgatggcattaaatttcctttgagaatggatatggctggttgggggtatcgcatcaaatcctactcattctggcgcaactgttactgcacccagcttgaccatacaggtggtatcacattcctggaattctggctttgcaaatttatcttttgcacttcttccaaaaaacctactaggccttggaattctctggccacttctctctacaatggtatttgcgttggccttgggtattggatttatttccctcgcttccgtcgcagtgatattccaagggaacctctagtcgattcccttttggggaactggctttaccgcaatgtacctcccctccccttgatggctttctgcccagtggacgagatcatagcgaaagagccctcttggcctttcgtcgcgccatctcctgcttggatattcgtcttgccaccgaccgtagcgttgtaccccctcaacgatgtcgacgatgattatgctgattggtggaaagaggtgtccgtgaactgttgggacctgccacatgacgaactcttcgtcctgatctttcgtggcatgagtagtcctggtccagaggaccgtgagattcttgagcgcttttccaaccctgcagcacaacccccgcgacctattctaccttctcgctcatcgcgtccagggatacaaatccatgagcctagggcaacaataagtttttcggagactcctgtgggagagtcttctcatgatgaagatctcgttgaggccactgctgtctttgcttgcaaacgcgatcgagctcaattcgtcgaagagagttttgaagatgacgaacctctgggaatgcgattggtccgtcagaggaccactgatccctctcgcttgagcgaagttggatcctcagccgctatagaagagccaactttctcgctagttcaagcatcaactaaccctgtggcgcctcttccatctcccacatctacagagtatctgcaaggttctaccattctaataacgatctccgatggcgacgccccggagcatgaaagcgtggaaagccactctgaggcttctgctgcttatgaggaactgatgacgatagagattctagcggtaccagaggtccaagaggtgaatgaagcgggcatcttccttttggtgaccacgtaccagatattgacacgacagctcaagaggacaatcgccccagagatggaaaatgatgcggacggtggtggtgccccccaagtctcgcgaacaaatgagacagccgtcaaagctgagggctctatgcttgaatcttctccacttgcacatggtgagctgcgagttgagttcctagattctcccgctgctgaagggaaagaccaacctgttaaagataaagaaactgaggaagttgtccacccttttgtattggtggttcgtgatcctgtggggccttcgccgcctcttcctcctcccaccagatacgagagattgatgagggtgttggaggtaacttctcattctgctgtggatgaggctaagatggtgcttcacgaacatctgggtcctcgggtattggagcctagtgtcctcccgcgagtcttggaagccctaaggtatctttgccaggagaaggcattgaccttacggcaatttagtgccattgacgttctgctgaatgagcttggtagggctcgccaacgtcaatctgtcgtgaatgcccaggctcgcgacgcacgagaggctttgaatagcctcactcgagaaattgacatctcccgcggtattttaaatgagcgagccatccgcctacgggaactacaaatccaaaggtctaacttcaaacttcggatcaaggacttccaagcccgtttagcttttgttgagaatacgattgctgcagaagaagcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

651

Amino Acids

73.29

Weight (kDa)

4.95

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 600
Acc65I GGTACC 1 cut(s) 1168
AccB1I GGYRCC 3 cut(s) 1012, 1168, 1292
AccB7I CCANNNNNTGG 1 cut(s) 36
AccI GTMKAC 1 cut(s) 540
AccII CGCG 8 cut(s) 476, 700, 727, 846, 1309, 1639, 1773, 1824
AclWI GGATC 5 cut(s) 920, 945, 958, 1478, 1901
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 4 cut(s) 89, 203, 218, 262
AcuI CTGAAG 1 cut(s) 1431
AcvI CACGTG 1 cut(s) 36
AcyI GRCGYC 2 cut(s) 1013, 1086
AdeI CACNNNGTG 1 cut(s) 1373
AfaI GTAC 4 cut(s) 402, 524, 1170, 1223
AfeI AGCGCT 1 cut(s) 671
AfiI CCNNNNNNNGG 7 cut(s) 36, 378, 418, 1120, 1267, 1675, 1855
AgsI TTSAA 5 cut(s) 878, 992, 1352, 1792, 1885
AjnI CCWGG 5 cut(s) 198, 640, 730, 1668, 1764
AloI GAACNNNNNNTCC 4 cut(s) 597, 629, 1851, 1883
AluBI AGCT 7 cut(s) 172, 854, 1243, 1334, 1378, 1726, 1919
AluI AGCT 7 cut(s) 172, 854, 1243, 1334, 1378, 1726, 1919
Alw21I GWGCWC 1 cut(s) 856
Alw26I GTCTC 3 cut(s) 770, 1309, 1313
AlwI GGATC 5 cut(s) 920, 945, 958, 1478, 1901
Ama87I CYCGRG 2 cut(s) 1611, 1803
Aor51HI AGCGCT 1 cut(s) 671
AoxI GGCC 6 cut(s) 254, 270, 301, 464, 819, 1493
ApeKI GCWGC 5 cut(s) 686, 1130, 1378, 1406, 1940
ApoI RAATTY 4 cut(s) 89, 203, 218, 262
ArsI GACNNNNNNTTYG 4 cut(s) 593, 597, 625, 629
Asp718I GGTACC 1 cut(s) 1168
AspA2I CCTAGG 1 cut(s) 752
AspLEI GCGC 4 cut(s) 153, 478, 672, 1015
AspS9I GGNCC 8 cut(s) 589, 644, 652, 907, 918, 1177, 1493, 1607
AsuC2I CCSGG 1 cut(s) 1091
AsuHPI GGTGA 3 cut(s) 1198, 1225, 1385
AvaI CYCGRG 2 cut(s) 1611, 1803
AvaII GGWCC 7 cut(s) 589, 644, 652, 907, 918, 1177, 1607
AvrII CCTAGG 1 cut(s) 752
AxyI CCTNAGG 1 cut(s) 1655
BaeGI GKGCMC 1 cut(s) 1297
BalI TGGCCA 1 cut(s) 272
BamHI GGATCC 1 cut(s) 950
BanI GGYRCC 3 cut(s) 1012, 1168, 1292
BanII GRGCYC 4 cut(s) 459, 856, 1343, 1738
BauI CACGAG 1 cut(s) 1779
BbrPI CACGTG 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 856
BbvCI CCTCAGC 2 cut(s) 955, 1335
BbvI GCAGC 5 cut(s) 698, 1117, 1365, 1393, 1927
BccI CCATC 9 cut(s) 38, 74, 412, 487, 1030, 1073, 1261, 1579, 1853
BceAI ACGGC 2 cut(s) 1310, 1706
BcgI CGANNNNNNTGC 2 cut(s) 533, 567
BciT130I CCWGG 5 cut(s) 200, 642, 732, 1670, 1766
BciVI GTATCC 1 cut(s) 729
BcnI CCSGG 1 cut(s) 1091
BcoDI GTCTC 3 cut(s) 770, 1309, 1313
BfaI CTAG 7 cut(s) 252, 362, 753, 986, 1163, 1394, 1626
BfmI CTRYAG 4 cut(s) 684, 963, 1035, 1941
BfoI RGCGCY 2 cut(s) 673, 1016
BfuAI ACCTGC 1 cut(s) 600
BfuI GTATCC 1 cut(s) 729
BglI GCCNNNNNGGC 1 cut(s) 463
BglII AGATCT 1 cut(s) 808
BisI GCNGC 7 cut(s) 687, 960, 1131, 1379, 1407, 1502, 1941
BlnI CCTAGG 1 cut(s) 752
BlsI GCNGC 7 cut(s) 688, 961, 1132, 1380, 1408, 1503, 1942
Bme1390I CCNGG 6 cut(s) 200, 642, 732, 1091, 1670, 1766
Bme18I GGWCC 7 cut(s) 589, 644, 652, 907, 918, 1177, 1607
BmeT110I CYCGRG 2 cut(s) 1611, 1803
BmgT120I GGNCC 8 cut(s) 589, 644, 652, 907, 918, 1177, 1493, 1607
BmiI GGNNCC 9 cut(s) 357, 590, 952, 1014, 1170, 1294, 1494, 1608, 1623
BmrFI CCNGG 6 cut(s) 200, 642, 732, 1091, 1670, 1766
BmrI ACTGGG 1 cut(s) 425
BmsI GCATC 4 cut(s) 138, 1004, 1209, 1267
BmuI ACTGGG 1 cut(s) 425
BoxI GACNNNNGTC 1 cut(s) 1325
BpiI GAAGAC 1 cut(s) 786
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu10I CCTNAGC 2 cut(s) 955, 1335
BpuEI CTTGAG 3 cut(s) 686, 958, 1229
BpuMI CCSGG 1 cut(s) 1091
BsaAI YACGTR 3 cut(s) 36, 64, 1221
BsaBI GATNNNNATC 2 cut(s) 740, 807
BsaHI GRCGYC 2 cut(s) 1013, 1086
BsaJI CCNNGG 9 cut(s) 257, 304, 350, 731, 752, 1089, 1610, 1764, 1822
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 7 cut(s) 36, 378, 418, 1120, 1267, 1675, 1855
Bse1I ACTGG 2 cut(s) 389, 431
Bse21I CCTNAGG 1 cut(s) 1655
Bse3DI GCAATG 1 cut(s) 403
Bse8I GATNNNNATC 2 cut(s) 740, 807
BseBI CCWGG 5 cut(s) 200, 642, 732, 1670, 1766
BseDI CCNNGG 9 cut(s) 257, 304, 350, 731, 752, 1089, 1610, 1764, 1822
BseGI GGATG 2 cut(s) 1579, 1845
BseJI GATNNNNATC 2 cut(s) 740, 807
BseLI CCNNNNNNNGG 7 cut(s) 36, 378, 418, 1120, 1267, 1675, 1855
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 4 cut(s) 969, 1110, 1326, 1437
BseNI ACTGG 2 cut(s) 389, 431
BseRI GAGGAG 1 cut(s) 1503
BseSI GKGCMC 1 cut(s) 1297
BseXI GCAGC 5 cut(s) 698, 1117, 1365, 1393, 1927
BseYI CCCAGC 1 cut(s) 168
BsgI GTGCAG 1 cut(s) 148
Bsh1236I CGCG 8 cut(s) 476, 700, 727, 846, 1309, 1639, 1773, 1824
Bsh1285I CGRYCG 2 cut(s) 513, 850
BshFI GGCC 6 cut(s) 256, 272, 303, 466, 821, 1495
BshNI GGYRCC 3 cut(s) 1012, 1168, 1292
BsiEI CGRYCG 2 cut(s) 513, 850
BsiHKAI GWGCWC 1 cut(s) 856
BsiHKCI CYCGRG 2 cut(s) 1611, 1803
BsiSI CCGG 1 cut(s) 1091
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 7 cut(s) 36, 378, 418, 1120, 1267, 1675, 1855
BsmAI GTCTC 3 cut(s) 770, 1309, 1313
BsmFI GGGAC 1 cut(s) 602
BsmI GAATGC 2 cut(s) 903, 1765
BsnI GGCC 6 cut(s) 256, 272, 303, 466, 821, 1495
BsoBI CYCGRG 2 cut(s) 1611, 1803
Bsp1286I GDGCHC 5 cut(s) 459, 856, 1297, 1343, 1738
Bsp143I GATC 9 cut(s) 441, 618, 808, 847, 925, 950, 1071, 1483, 1893
Bsp68I TCGCGA 2 cut(s) 1309, 1773
BspANI GGCC 6 cut(s) 256, 272, 303, 466, 821, 1495
BspCNI CTCAG 4 cut(s) 968, 1111, 1327, 1438
BspFNI CGCG 8 cut(s) 476, 700, 727, 846, 1309, 1639, 1773, 1824
BspHI TCATGA 1 cut(s) 799
BspLI GGNNCC 9 cut(s) 357, 590, 952, 1014, 1170, 1294, 1494, 1608, 1623
BspMAI CTGCAG 2 cut(s) 688, 1945
BspMI ACCTGC 1 cut(s) 600
BspPI GGATC 5 cut(s) 920, 945, 958, 1478, 1901
BspQI GCTCTTC 1 cut(s) 963
BspT107I GGYRCC 3 cut(s) 1012, 1168, 1292
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 2 cut(s) 389, 431
BssECI CCNNGG 9 cut(s) 257, 304, 350, 731, 752, 1089, 1610, 1764, 1822
BssMI GATC 9 cut(s) 441, 618, 808, 847, 925, 950, 1071, 1483, 1893
BssNI GRCGYC 2 cut(s) 1013, 1086
BssSI CACGAG 1 cut(s) 1779
BssT1I CCWWGG 4 cut(s) 257, 304, 350, 752
Bst2BI CACGAG 1 cut(s) 1779
Bst2UI CCWGG 5 cut(s) 200, 642, 732, 1670, 1766
Bst4CI ACNGT 5 cut(s) 158, 514, 584, 656, 1286
Bst6I CTCTTC 5 cut(s) 614, 861, 963, 1023, 1512
BstACI GRCGYC 2 cut(s) 1013, 1086
BstBAI YACGTR 3 cut(s) 36, 64, 1221
BstC8I GCNNGC 5 cut(s) 838, 1198, 1738, 1771, 1842
BstDEI CTNAG 6 cut(s) 955, 1119, 1335, 1446, 1581, 1655
BstDSI CCRYGG 1 cut(s) 1822
BstEII GGTNACC 1 cut(s) 1213
BstF5I GGATG 2 cut(s) 1579, 1845
BstFNI CGCG 8 cut(s) 476, 700, 727, 846, 1309, 1639, 1773, 1824
BstH2I RGCGCY 2 cut(s) 673, 1016
BstHHI GCGC 4 cut(s) 153, 478, 672, 1015
BstKTI GATC 9 cut(s) 444, 621, 811, 850, 928, 953, 1074, 1486, 1896
BstMAI GTCTC 3 cut(s) 770, 1309, 1313
BstMBI GATC 9 cut(s) 441, 618, 808, 847, 925, 950, 1071, 1483, 1893
BstMCI CGRYCG 2 cut(s) 513, 850
BstNI CCWGG 5 cut(s) 200, 642, 732, 1670, 1766
BstPAI GACNNNNGTC 1 cut(s) 1325
BstPI GGTNACC 1 cut(s) 1213
BstSCI CCNGG 6 cut(s) 198, 640, 730, 1089, 1668, 1764
BstSFI CTRYAG 4 cut(s) 684, 963, 1035, 1941
BstSLI GKGCMC 1 cut(s) 1297
BstUI CGCG 8 cut(s) 476, 700, 727, 846, 1309, 1639, 1773, 1824
BstV1I GCAGC 5 cut(s) 698, 1117, 1365, 1393, 1927
BstV2I GAAGAC 1 cut(s) 786
BstX2I RGATCY 2 cut(s) 808, 950
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 2 cut(s) 808, 950
Bsu36I CCTNAGG 1 cut(s) 1655
BsuI GTATCC 1 cut(s) 729
BsuRI GGCC 6 cut(s) 256, 272, 303, 466, 821, 1495
BtgI CCRYGG 1 cut(s) 1822
BtgZI GCGATG 1 cut(s) 708
BtsCI GGATG 2 cut(s) 1579, 1845
BtsI GCAGTG 2 cut(s) 346, 822
BtsIMutI CAGTG 4 cut(s) 346, 438, 822, 921
BtuMI TCGCGA 2 cut(s) 1309, 1773
BveI ACCTGC 1 cut(s) 600
Cac8I GCNNGC 5 cut(s) 838, 1198, 1738, 1771, 1842
CciI TCATGA 1 cut(s) 799
CfoI GCGC 4 cut(s) 153, 478, 672, 1015
Cfr13I GGNCC 8 cut(s) 589, 644, 652, 907, 918, 1177, 1493, 1607
Cfr42I CCGCGG 1 cut(s) 1825
CseI GACGC 3 cut(s) 716, 1094, 1784
Csp6I GTAC 4 cut(s) 401, 523, 1169, 1222
CviAII CATG 7 cut(s) 68, 599, 631, 746, 800, 1097, 1370
CviQI GTAC 4 cut(s) 401, 523, 1169, 1222
DdeI CTNAG 6 cut(s) 955, 1119, 1335, 1446, 1581, 1655
DinI GGCGCC 1 cut(s) 1014
DpnI GATC 9 cut(s) 443, 620, 810, 849, 927, 952, 1073, 1485, 1895
DpnII GATC 9 cut(s) 441, 618, 808, 847, 925, 950, 1071, 1483, 1893
DraI TTTAAA 1 cut(s) 1833
DraIII CACNNNGTG 1 cut(s) 1373
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 5 cut(s) 614, 861, 963, 1023, 1512
EarI CTCTTC 5 cut(s) 614, 861, 963, 1023, 1512
EciI GGCGGA 1 cut(s) 1838
Ecl136II GAGCTC 1 cut(s) 854
Eco130I CCWWGG 4 cut(s) 257, 304, 350, 752
Eco147I AGGCCT 1 cut(s) 256
Eco24I GRGCYC 4 cut(s) 459, 856, 1343, 1738
Eco47I GGWCC 7 cut(s) 589, 644, 652, 907, 918, 1177, 1607
Eco47III AGCGCT 1 cut(s) 671
Eco53kI GAGCTC 1 cut(s) 854
Eco57I CTGAAG 1 cut(s) 1431
Eco72I CACGTG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 1655
Eco88I CYCGRG 2 cut(s) 1611, 1803
Eco91I GGTNACC 1 cut(s) 1213
EcoICRI GAGCTC 1 cut(s) 854
EcoO109I RGGNCCY 3 cut(s) 589, 1493, 1607
EcoO65I GGTNACC 1 cut(s) 1213
EcoRI GAATTC 2 cut(s) 203, 262
EcoRII CCWGG 5 cut(s) 198, 640, 730, 1668, 1764
EcoT14I CCWWGG 4 cut(s) 257, 304, 350, 752
EcoT38I GRGCYC 4 cut(s) 459, 856, 1343, 1738
EgeI GGCGCC 1 cut(s) 1014
EheI GGCGCC 1 cut(s) 1014
ErhI CCWWGG 4 cut(s) 257, 304, 350, 752
FaeI CATG 7 cut(s) 71, 602, 634, 749, 803, 1100, 1373
FaqI GGGAC 1 cut(s) 602
FatI CATG 7 cut(s) 67, 598, 630, 745, 799, 1096, 1369
FauI CCCGC 5 cut(s) 705, 1189, 1411, 1644, 1829
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 7 cut(s) 687, 960, 1131, 1379, 1407, 1502, 1941
FokI GGATG 2 cut(s) 1586, 1832
FriOI GRGCYC 4 cut(s) 459, 856, 1343, 1738
Fsp4HI GCNGC 7 cut(s) 687, 960, 1131, 1379, 1407, 1502, 1941
FspBI CTAG 7 cut(s) 252, 362, 753, 986, 1163, 1394, 1626
GlaI GCGC 4 cut(s) 152, 477, 671, 1014
GluI GCNGC 7 cut(s) 687, 960, 1131, 1379, 1407, 1502, 1941
GsaI CCCAGC 1 cut(s) 172
HaeII RGCGCY 2 cut(s) 673, 1016
HaeIII GGCC 6 cut(s) 256, 272, 303, 466, 821, 1495
HapII CCGG 1 cut(s) 1091
HgaI GACGC 3 cut(s) 716, 1094, 1784
HhaI GCGC 4 cut(s) 153, 478, 672, 1015
Hin1I GRCGYC 2 cut(s) 1013, 1086
Hin1II CATG 7 cut(s) 71, 602, 634, 749, 803, 1100, 1373
Hin6I GCGC 4 cut(s) 151, 476, 670, 1013
HinP1I GCGC 4 cut(s) 151, 476, 670, 1013
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 8 cut(s) 368, 661, 778, 791, 1159, 1352, 1397, 1641
HpaII CCGG 1 cut(s) 1091
HphI GGTGA 3 cut(s) 1198, 1225, 1385
Hpy166II GTNNAC 4 cut(s) 436, 541, 580, 1459
Hpy188I TCNGA 5 cut(s) 775, 915, 1078, 1120, 1893
Hpy8I GTNNAC 4 cut(s) 436, 541, 580, 1459
Hpy99I CGWCG 6 cut(s) 339, 476, 545, 866, 1088, 1778
HpyAV CCTTC 4 cut(s) 723, 1406, 1506, 1669
HpyCH4III ACNGT 5 cut(s) 158, 514, 584, 656, 1286
HpyCH4IV ACGT 5 cut(s) 35, 63, 1220, 1710, 1744
HpyCH4V TGCA 9 cut(s) 67, 165, 216, 231, 686, 840, 1048, 1367, 1943
HpyF3I CTNAG 6 cut(s) 955, 1119, 1335, 1446, 1581, 1655
HpySE526I ACGT 5 cut(s) 35, 63, 1220, 1710, 1744
Hsp92I GRCGYC 2 cut(s) 1013, 1086
Hsp92II CATG 7 cut(s) 71, 602, 634, 749, 803, 1100, 1373
HspAI GCGC 4 cut(s) 151, 476, 670, 1013
KasI GGCGCC 1 cut(s) 1012
KpnI GGTACC 1 cut(s) 1172
KspI CCGCGG 1 cut(s) 1825
Kzo9I GATC 9 cut(s) 441, 618, 808, 847, 925, 950, 1071, 1483, 1893
LguI GCTCTTC 1 cut(s) 963
LmnI GCTCC 2 cut(s) 1093, 1621
Lsp1109I GCAGC 5 cut(s) 698, 1117, 1365, 1393, 1927
LweI GCATC 4 cut(s) 138, 1004, 1209, 1267
MaeI CTAG 7 cut(s) 252, 362, 753, 986, 1163, 1394, 1626
MaeII ACGT 5 cut(s) 35, 63, 1220, 1710, 1744
MaeIII GTNAC 3 cut(s) 158, 1213, 1552
MalI GATC 9 cut(s) 443, 620, 810, 849, 927, 952, 1073, 1485, 1895
MboI GATC 9 cut(s) 441, 618, 808, 847, 925, 950, 1071, 1483, 1893
MflI RGATCY 2 cut(s) 808, 950
MhlI GDGCHC 5 cut(s) 459, 856, 1297, 1343, 1738
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 7 cut(s) 89, 203, 218, 262, 857, 1694, 1809
MluNI TGGCCA 1 cut(s) 272
Mly113I GGCGCC 1 cut(s) 1013
MlyI GAGTC 3 cut(s) 772, 800, 1650
MmeI TCCRAC 3 cut(s) 702, 928, 1527
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MseI TTAA 3 cut(s) 87, 1431, 1832
MslI CAYNNNNRTG 1 cut(s) 183
Msp20I TGGCCA 1 cut(s) 272
MspA1I CMGCKG 2 cut(s) 1406, 1824
MspI CCGG 1 cut(s) 1091
MspR9I CCNGG 6 cut(s) 200, 642, 732, 1091, 1670, 1766
Mva1269I GAATGC 2 cut(s) 903, 1765
MvaI CCWGG 5 cut(s) 200, 642, 732, 1670, 1766
MvnI CGCG 8 cut(s) 476, 700, 727, 846, 1309, 1639, 1773, 1824
NarI GGCGCC 1 cut(s) 1013
NciI CCSGG 1 cut(s) 1091
NdeII GATC 9 cut(s) 441, 618, 808, 847, 925, 950, 1071, 1483, 1893
NlaIII CATG 7 cut(s) 71, 602, 634, 749, 803, 1100, 1373
NlaIV GGNNCC 9 cut(s) 357, 590, 952, 1014, 1170, 1294, 1494, 1608, 1623
NmuCI GTSAC 1 cut(s) 1213
NruI TCGCGA 2 cut(s) 1309, 1773
PaeR7I CTCGAG 1 cut(s) 1803
PagI TCATGA 1 cut(s) 799
PceI AGGCCT 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 963
PcsI WCGNNNNNNNCGW 4 cut(s) 540, 609, 724, 1777
PctI GAATGC 2 cut(s) 903, 1765
PfeI GAWTC 5 cut(s) 368, 661, 1159, 1352, 1397
PflMI CCANNNNNTGG 1 cut(s) 36
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 7 cut(s) 688, 961, 1132, 1380, 1408, 1503, 1942
Ple19I CGATCG 1 cut(s) 850
PleI GAGTC 3 cut(s) 772, 799, 1649
PluTI GGCGCC 1 cut(s) 1016
PmaCI CACGTG 1 cut(s) 36
PmlI CACGTG 1 cut(s) 36
PpsI GAGTC 3 cut(s) 772, 799, 1649
Ppu21I YACGTR 3 cut(s) 36, 64, 1221
PpuMI RGGWCCY 2 cut(s) 589, 1607
PshAI GACNNNNGTC 1 cut(s) 1325
Psp124BI GAGCTC 1 cut(s) 856
Psp5II RGGWCCY 2 cut(s) 589, 1607
Psp6I CCWGG 5 cut(s) 198, 640, 730, 1668, 1764
PspCI CACGTG 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 1213
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 5 cut(s) 198, 640, 730, 1668, 1764
PspN4I GGNNCC 9 cut(s) 357, 590, 952, 1014, 1170, 1294, 1494, 1608, 1623
PspPI GGNCC 8 cut(s) 589, 644, 652, 907, 918, 1177, 1493, 1607
PspPPI RGGWCCY 2 cut(s) 589, 1607
PsrI GAACNNNNNNTAC 4 cut(s) 374, 406, 1461, 1493
PstI CTGCAG 2 cut(s) 688, 1945
PsuI RGATCY 2 cut(s) 808, 950
PvuI CGATCG 1 cut(s) 850
RruI TCGCGA 2 cut(s) 1309, 1773
RsaI GTAC 4 cut(s) 402, 524, 1170, 1223
RsaNI GTAC 4 cut(s) 401, 523, 1169, 1222
RseI CAYNNNNRTG 1 cut(s) 183
SacI GAGCTC 1 cut(s) 856
SacII CCGCGG 1 cut(s) 1825
SalI GTCGAC 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 3 cut(s) 87, 1431, 1832
SatI GCNGC 7 cut(s) 687, 960, 1131, 1379, 1407, 1502, 1941
Sau3AI GATC 9 cut(s) 441, 618, 808, 847, 925, 950, 1071, 1483, 1893
Sau96I GGNCC 8 cut(s) 589, 644, 652, 907, 918, 1177, 1493, 1607
SchI GAGTC 3 cut(s) 772, 800, 1650
ScrFI CCNGG 6 cut(s) 200, 642, 732, 1091, 1670, 1766
SduI GDGCHC 5 cut(s) 459, 856, 1297, 1343, 1738
SfaNI GCATC 4 cut(s) 138, 1004, 1209, 1267
SfcI CTRYAG 4 cut(s) 684, 963, 1035, 1941
SfoI GGCGCC 1 cut(s) 1014
Sfr274I CTCGAG 1 cut(s) 1803
Sfr303I CCGCGG 1 cut(s) 1825
SgrBI CCGCGG 1 cut(s) 1825
SinI GGWCC 7 cut(s) 589, 644, 652, 907, 918, 1177, 1607
SlaI CTCGAG 1 cut(s) 1803
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 4 cut(s) 665, 937, 1244, 1803
SmoI CTYRAG 4 cut(s) 665, 937, 1244, 1803
Sse9I AATT 7 cut(s) 89, 203, 218, 262, 857, 1694, 1809
SseBI AGGCCT 1 cut(s) 256
SspDI GGCGCC 1 cut(s) 1012
SspMI CTAG 7 cut(s) 252, 362, 753, 986, 1163, 1394, 1626
SstI GAGCTC 1 cut(s) 856
StuI AGGCCT 1 cut(s) 256
StyD4I CCNGG 6 cut(s) 198, 640, 730, 1089, 1668, 1764
StyI CCWWGG 4 cut(s) 257, 304, 350, 752
TaaI ACNGT 5 cut(s) 158, 514, 584, 656, 1286
TaiI ACGT 5 cut(s) 38, 66, 1223, 1713, 1747
TaqI TCGA 5 cut(s) 366, 540, 850, 864, 1804
TasI AATT 7 cut(s) 89, 203, 218, 262, 857, 1694, 1809
TauI GCSGC 2 cut(s) 962, 1504
TfiI GAWTC 5 cut(s) 368, 661, 1159, 1352, 1397
Tru1I TTAA 3 cut(s) 87, 1431, 1832
Tru9I TTAA 3 cut(s) 87, 1431, 1832
TscAI CASTG 4 cut(s) 346, 438, 829, 928
TseFI GTSAC 1 cut(s) 1213
TseI GCWGC 5 cut(s) 686, 1130, 1378, 1406, 1940
Tsp45I GTSAC 1 cut(s) 1213
TspDTI ATGAA 3 cut(s) 819, 1113, 1206
TspGWI ACGGA 3 cut(s) 323, 565, 899
TspRI CASTG 4 cut(s) 346, 438, 829, 928
Van91I CCANNNNNTGG 1 cut(s) 36
VpaK11BI GGWCC 7 cut(s) 589, 644, 652, 907, 918, 1177, 1607
XapI RAATTY 4 cut(s) 89, 203, 218, 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 486
XhoI CTCGAG 1 cut(s) 1803
XmaJI CCTAGG 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 7 cut(s) 252, 362, 753, 986, 1163, 1394, 1626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.