Rmu_sc0000588.1_g000024

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000588.1
OG0000214
Physical Location & Seq
Reverse (-)
83807 .. 85026
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000588.1_g000024.1.cds

Sequence Viewer

Length: 1122 bp
atggcctattacgggcttcccatccgctgtcccatagcaactcttcggcaggtgcctggtgattttagcagttggggaccaaggaggaaagtgggcttctggcccaccatcgctccgaggaaaaattttggtatcagcaggtccgagcgagagatttggccctatgggatgcgcaatacattcgatttccggtttgggcagatgagcataactctgctggatgttcttaccatcacggggttgcccattgactttgacccttatgtgcatggtcagtttgatggcattcaattttctttgagaatgggtatggctagtcgggggcatcacagcagatcctacccaatctggcgcgactattactgcacccagcgtgaccatacaagaggtatcatattcctggaattctggctttgcaaatttatcttttgcatttcttccaacaaacctactgggccttcgaattctctggccactgctctctacaatggtacttgcattggccttgggcaacctgtattgggtgagttatatcgttccctttatagggccgtaatgcgccctttcgatactgacattagtggccctttctggattcttgccttttggttgaagatttatttccctcgcttccgtcgcgatgatattccaaaggaacctctagtcgattcccttttggggaaatggctttgccgtaatgtaaggtatcgagctcctccctactccgagtgttttatttacttgtacttgttgggagagatgccggacccaaaaatagtcctttctaggcgtttccctcctccccttgacgatggctttctacccagtggacgggatcatagcgaaagagccctcctggcctttcgtcacgccatctcctgcttggatattcgtcttgccaccgactgcataagttatgagctctatgcccctaaccacttcgctcgccaatttgggttggcccagttggtaccctggcctctggttgattctgccaattattacacctcttggcggagattagccccacctgggtctgccccctttcagagtcagtttactttgatagtgattaccccttgttattactctgaatatctttattcgaaattcagggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

373

Amino Acids

43.34

Weight (kDa)

9.3

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc16I TGCGCA 1 cut(s) 173
Acc36I ACCTGC 2 cut(s) 40, 129
Acc65I GGTACC 1 cut(s) 970
AccB1I GGYRCC 2 cut(s) 52, 970
AccII CGCG 2 cut(s) 354, 639
AciI CCGC 2 cut(s) 25, 1015
AclWI GGATC 2 cut(s) 330, 843
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 5 cut(s) 124, 404, 419, 463, 1109
AfaI GTAC 3 cut(s) 493, 746, 972
AfiI CCNNNNNNNGG 9 cut(s) 12, 237, 521, 546, 547, 678, 831, 1014, 1032
AgsI TTSAA 2 cut(s) 290, 613
AjnI CCWGG 5 cut(s) 55, 399, 855, 974, 1030
AluBI AGCT 2 cut(s) 713, 922
AluI AGCT 2 cut(s) 713, 922
Alw21I GWGCWC 2 cut(s) 715, 924
AlwI GGATC 2 cut(s) 330, 843
ApoI RAATTY 5 cut(s) 124, 404, 419, 463, 1109
Asp718I GGTACC 1 cut(s) 970
AspLEI GCGC 3 cut(s) 174, 354, 561
AspS9I GGNCC 9 cut(s) 77, 102, 141, 159, 455, 549, 584, 766, 961
AsuHPI GGTGA 2 cut(s) 71, 536
AsuII TTCGAA 2 cut(s) 461, 1106
AvaII GGWCC 3 cut(s) 77, 141, 766
BalI TGGCCA 1 cut(s) 473
BanI GGYRCC 2 cut(s) 52, 970
BanII GRGCYC 3 cut(s) 715, 853, 924
Bbv12I GWGCWC 2 cut(s) 715, 924
BccI CCATC 6 cut(s) 29, 116, 239, 275, 806, 881
BceAI ACGGC 2 cut(s) 536, 678
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BciT130I CCWGG 5 cut(s) 57, 401, 857, 976, 1032
BfaI CTAG 3 cut(s) 315, 662, 786
BfuAI ACCTGC 2 cut(s) 40, 129
BglI GCCNNNNNGGC 1 cut(s) 857
Bme1390I CCNGG 5 cut(s) 57, 401, 857, 976, 1032
Bme18I GGWCC 3 cut(s) 77, 141, 766
BmgT120I GGNCC 9 cut(s) 77, 102, 141, 159, 455, 549, 584, 766, 961
BmiI GGNNCC 5 cut(s) 54, 78, 657, 768, 972
BmrFI CCNGG 5 cut(s) 57, 401, 857, 976, 1032
BmrI ACTGGG 3 cut(s) 462, 819, 958
BmsI GCATC 3 cut(s) 159, 334, 750
BmuI ACTGGG 3 cut(s) 462, 819, 958
BplI GAGNNNNNCTC 2 cut(s) 196, 228
Bpu14I TTCGAA 2 cut(s) 461, 1106
BsaJI CCNNGG 5 cut(s) 80, 116, 505, 974, 1031
BsaWI WCCGGW 1 cut(s) 189
BsaXI ACNNNNNCTCC 4 cut(s) 97, 127, 860, 890
Bsc4I CCNNNNNNNGG 9 cut(s) 12, 237, 521, 546, 547, 678, 831, 1014, 1032
Bse1I ACTGG 3 cut(s) 457, 825, 964
BseBI CCWGG 5 cut(s) 57, 401, 857, 976, 1032
BseDI CCNNGG 5 cut(s) 80, 116, 505, 974, 1031
BseGI GGATG 3 cut(s) 21, 174, 226
BseLI CCNNNNNNNGG 9 cut(s) 12, 237, 521, 546, 547, 678, 831, 1014, 1032
BseNI ACTGG 3 cut(s) 457, 825, 964
BseRI GAGGAG 2 cut(s) 705, 789
BseYI CCCAGC 1 cut(s) 369
BsgI GTGCAG 1 cut(s) 349
Bsh1236I CGCG 2 cut(s) 354, 639
BshNI GGYRCC 2 cut(s) 52, 970
BsiHKAI GWGCWC 2 cut(s) 715, 924
BsiSI CCGG 2 cut(s) 190, 764
BslFI GGGAC 2 cut(s) 15, 90
BslI CCNNNNNNNGG 9 cut(s) 12, 237, 521, 546, 547, 678, 831, 1014, 1032
BsmFI GGGAC 2 cut(s) 15, 90
BsmI GAATGC 1 cut(s) 285
Bsp119I TTCGAA 2 cut(s) 461, 1106
Bsp1286I GDGCHC 3 cut(s) 715, 853, 924
Bsp143I GATC 2 cut(s) 335, 835
Bsp68I TCGCGA 1 cut(s) 639
BspACI CCGC 2 cut(s) 25, 1015
BspFNI CGCG 2 cut(s) 354, 639
BspLI GGNNCC 5 cut(s) 54, 78, 657, 768, 972
BspMI ACCTGC 2 cut(s) 40, 129
BspPI GGATC 2 cut(s) 330, 843
BspT104I TTCGAA 2 cut(s) 461, 1106
BspT107I GGYRCC 2 cut(s) 52, 970
BsrI ACTGG 3 cut(s) 457, 825, 964
BssECI CCNNGG 5 cut(s) 80, 116, 505, 974, 1031
BssMI GATC 2 cut(s) 335, 835
BssT1I CCWWGG 2 cut(s) 80, 505
Bst2UI CCWGG 5 cut(s) 57, 401, 857, 976, 1032
Bst6I CTCTTC 1 cut(s) 48
BstBI TTCGAA 2 cut(s) 461, 1106
BstC8I GCNNGC 1 cut(s) 946
BstF5I GGATG 3 cut(s) 21, 174, 226
BstFNI CGCG 2 cut(s) 354, 639
BstHHI GCGC 3 cut(s) 174, 354, 561
BstKTI GATC 2 cut(s) 338, 838
BstMBI GATC 2 cut(s) 335, 835
BstMWI GCNNNNNNNGC 2 cut(s) 636, 857
BstNI CCWGG 5 cut(s) 57, 401, 857, 976, 1032
BstSCI CCNGG 5 cut(s) 55, 399, 855, 974, 1030
BstUI CGCG 2 cut(s) 354, 639
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BtgZI GCGATG 2 cut(s) 94, 654
BtsCI GGATG 3 cut(s) 21, 174, 226
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 2 cut(s) 474, 832
BtuMI TCGCGA 1 cut(s) 639
BveI ACCTGC 2 cut(s) 40, 129
Cac8I GCNNGC 1 cut(s) 946
CfoI GCGC 3 cut(s) 174, 354, 561
Cfr13I GGNCC 9 cut(s) 77, 102, 141, 159, 455, 549, 584, 766, 961
Csp6I GTAC 3 cut(s) 492, 745, 971
CviAII CATG 1 cut(s) 269
CviQI GTAC 3 cut(s) 492, 745, 971
DpnI GATC 2 cut(s) 337, 837
DpnII GATC 2 cut(s) 335, 835
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 1030
Ecl136II GAGCTC 2 cut(s) 713, 922
Eco130I CCWWGG 2 cut(s) 80, 505
Eco24I GRGCYC 3 cut(s) 715, 853, 924
Eco47I GGWCC 3 cut(s) 77, 141, 766
Eco53kI GAGCTC 2 cut(s) 713, 922
EcoICRI GAGCTC 2 cut(s) 713, 922
EcoRI GAATTC 2 cut(s) 404, 463
EcoRII CCWGG 5 cut(s) 55, 399, 855, 974, 1030
EcoT14I CCWWGG 2 cut(s) 80, 505
EcoT38I GRGCYC 3 cut(s) 715, 853, 924
ErhI CCWWGG 2 cut(s) 80, 505
FaeI CATG 1 cut(s) 272
FaqI GGGAC 2 cut(s) 15, 90
FatI CATG 1 cut(s) 268
FokI GGATG 3 cut(s) 8, 181, 233
FriOI GRGCYC 3 cut(s) 715, 853, 924
FspBI CTAG 3 cut(s) 315, 662, 786
FspI TGCGCA 1 cut(s) 173
GlaI GCGC 3 cut(s) 173, 353, 560
GsaI CCCAGC 1 cut(s) 373
HapII CCGG 2 cut(s) 190, 764
HhaI GCGC 3 cut(s) 174, 354, 561
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 3 cut(s) 172, 352, 559
HinP1I GCGC 3 cut(s) 172, 352, 559
HinfI GANTC 4 cut(s) 595, 668, 989, 1051
HpaII CCGG 2 cut(s) 190, 764
HphI GGTGA 2 cut(s) 71, 536
Hpy166II GTNNAC 2 cut(s) 830, 1059
Hpy188I TCNGA 5 cut(s) 117, 145, 727, 1050, 1093
Hpy188III TCNNGA 2 cut(s) 592, 638
Hpy8I GTNNAC 2 cut(s) 830, 1059
Hpy99I CGWCG 1 cut(s) 639
HpyAV CCTTC 1 cut(s) 468
HpyCH4V TGCA 6 cut(s) 268, 366, 417, 432, 498, 909
HpyF10VI GCNNNNNNNGC 2 cut(s) 636, 857
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 3 cut(s) 172, 352, 559
KpnI GGTACC 1 cut(s) 974
Kzo9I GATC 2 cut(s) 335, 835
LmnI GCTCC 2 cut(s) 118, 718
LweI GCATC 3 cut(s) 159, 334, 750
MaeI CTAG 3 cut(s) 315, 662, 786
MaeIII GTNAC 2 cut(s) 374, 866
MalI GATC 2 cut(s) 337, 837
MboI GATC 2 cut(s) 335, 835
MboII GAAGA 3 cut(s) 35, 429, 625
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 3 cut(s) 715, 853, 924
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 8 cut(s) 124, 290, 404, 419, 463, 950, 997, 1109
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 1 cut(s) 1060
MmeI TCCRAC 1 cut(s) 465
Mox20I TGGCCA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 2 cut(s) 190, 764
MspR9I CCNGG 5 cut(s) 57, 401, 857, 976, 1032
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 5 cut(s) 57, 401, 857, 976, 1032
MvnI CGCG 2 cut(s) 354, 639
MwoI GCNNNNNNNGC 2 cut(s) 636, 857
NdeII GATC 2 cut(s) 335, 835
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 5 cut(s) 54, 78, 657, 768, 972
NmuCI GTSAC 2 cut(s) 374, 866
NruI TCGCGA 1 cut(s) 639
NsbI TGCGCA 1 cut(s) 173
NspV TTCGAA 2 cut(s) 461, 1106
PaqCI CACCTGC 1 cut(s) 40
PctI GAATGC 1 cut(s) 285
PfeI GAWTC 3 cut(s) 595, 668, 989
PfoI TCCNGGA 1 cut(s) 399
PleI GAGTC 1 cut(s) 1059
PpsI GAGTC 1 cut(s) 1059
Psp124BI GAGCTC 2 cut(s) 715, 924
Psp6I CCWGG 5 cut(s) 55, 399, 855, 974, 1030
PspFI CCCAGC 1 cut(s) 369
PspGI CCWGG 5 cut(s) 55, 399, 855, 974, 1030
PspN4I GGNNCC 5 cut(s) 54, 78, 657, 768, 972
PspPI GGNCC 9 cut(s) 77, 102, 141, 159, 455, 549, 584, 766, 961
PsuI RGATCY 1 cut(s) 335
RruI TCGCGA 1 cut(s) 639
RsaI GTAC 3 cut(s) 493, 746, 972
RsaNI GTAC 3 cut(s) 492, 745, 971
SacI GAGCTC 2 cut(s) 715, 924
Sau3AI GATC 2 cut(s) 335, 835
Sau96I GGNCC 9 cut(s) 77, 102, 141, 159, 455, 549, 584, 766, 961
SchI GAGTC 1 cut(s) 1060
ScrFI CCNGG 5 cut(s) 57, 401, 857, 976, 1032
SduI GDGCHC 3 cut(s) 715, 853, 924
SfaNI GCATC 3 cut(s) 159, 334, 750
SfuI TTCGAA 2 cut(s) 461, 1106
SinI GGWCC 3 cut(s) 77, 141, 766
Sse9I AATT 8 cut(s) 124, 290, 404, 419, 463, 950, 997, 1109
SsiI CCGC 2 cut(s) 25, 1015
SspMI CTAG 3 cut(s) 315, 662, 786
SstI GAGCTC 2 cut(s) 715, 924
StyD4I CCNGG 5 cut(s) 55, 399, 855, 974, 1030
StyI CCWWGG 2 cut(s) 80, 505
TaqI TCGA 6 cut(s) 183, 461, 567, 666, 709, 1106
TasI AATT 8 cut(s) 124, 290, 404, 419, 463, 950, 997, 1109
TatI WGTACW 1 cut(s) 744
TfiI GAWTC 3 cut(s) 595, 668, 989
TscAI CASTG 2 cut(s) 481, 832
TseFI GTSAC 2 cut(s) 374, 866
Tsp45I GTSAC 2 cut(s) 374, 866
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 2 cut(s) 481, 832
VpaK11BI GGWCC 3 cut(s) 77, 141, 766
XapI RAATTY 5 cut(s) 124, 404, 419, 463, 1109
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XspI CTAG 3 cut(s) 315, 662, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.