Rroxscaffold_2G00077350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000214
Physical Location & Seq
Forward (+)
909893 .. 910129
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077350.1

Sequence Viewer

Length: 237 bp
ATGGGGTTTGGTGAAGGTGATAATCAAGCCGGCCTAGGCCCTACCCCTCGCGACCCATTGCTAGATGATGCCATGGCTTACTTTGCGCTTCGATCCGTAGACCCATCGCTGCTCTTTGACGGACGCCCGGTGATTTTAGCGGTTGGAGGCCAAGAAGGAAAGTGGGTCACCGGCCTACCGCCACCCCGAGGAGAGAGCTTGGTATCGGGAGGTTCGAGCGAGAGACCGGCTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.11

Weight (kDa)

4.61

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AccII CGCG 1 cut(s) 51
AciI CCGC 2 cut(s) 140, 179
AclWI GGATC 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 188
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 4 cut(s) 31, 37, 148, 172
ApeKI GCWGC 1 cut(s) 109
AspA2I CCTAGG 1 cut(s) 34
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 4 cut(s) 23, 29, 142, 160
AvaI CYCGRG 1 cut(s) 186
AvrII CCTAGG 1 cut(s) 34
BbvI GCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 112
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 2 cut(s) 35, 62
BisI GCNGC 1 cut(s) 110
BlnI CCTAGG 1 cut(s) 34
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 58
BplI GAGNNNNNCTC 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 34, 72, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 3 cut(s) 29, 170, 226
Bse3DI GCAATG 1 cut(s) 56
BseDI CCNNGG 3 cut(s) 34, 72, 187
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 4 cut(s) 33, 39, 150, 174
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 4 cut(s) 30, 128, 171, 227
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 217
BsnI GGCC 4 cut(s) 33, 39, 150, 174
Bso31I GGTCTC 1 cut(s) 217
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 1 cut(s) 92
Bsp19I CCATGG 1 cut(s) 72
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 2 cut(s) 140, 179
BspANI GGCC 4 cut(s) 33, 39, 150, 174
BspFNI CGCG 1 cut(s) 51
BspPI GGATC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 56
BsrFI RCCGGY 3 cut(s) 29, 170, 226
BssAI RCCGGY 3 cut(s) 29, 170, 226
BssECI CCNNGG 3 cut(s) 34, 72, 187
BssMI GATC 1 cut(s) 92
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 2 cut(s) 34, 72
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 31
BstDSI CCRYGG 1 cut(s) 72
BstEII GGTNACC 1 cut(s) 166
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 1 cut(s) 95
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstPI GGTNACC 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 126
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 96
BsuRI GGCC 4 cut(s) 33, 39, 150, 174
BtgI CCRYGG 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 90
BtuMI TCGCGA 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 3 cut(s) 29, 170, 226
Cfr13I GGNCC 1 cut(s) 38
CseI GACGC 1 cut(s) 132
CviAII CATG 1 cut(s) 73
CviJI RGCY 8 cut(s) 29, 33, 39, 77, 150, 174, 198, 230
CviKI_1 RGCY 8 cut(s) 29, 33, 39, 77, 150, 174, 198, 230
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 34, 72
Eco31I GGTCTC 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 38
EcoO65I GGTNACC 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 34, 72
ErhI CCWWGG 2 cut(s) 34, 72
FaeI CATG 1 cut(s) 76
FaiI YATR 1 cut(s) 74
FatI CATG 1 cut(s) 72
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 2 cut(s) 35, 62
GlaI GCGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 110
HaeIII GGCC 4 cut(s) 33, 39, 150, 174
HapII CCGG 4 cut(s) 30, 128, 171, 227
HgaI GACGC 1 cut(s) 132
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HpaII CCGG 4 cut(s) 30, 128, 171, 227
HphI GGTGA 4 cut(s) 23, 29, 142, 160
Hpy166II GTNNAC 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 50, 207
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 8, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 86
KroI GCCGGC 1 cut(s) 29
KroNI GCCGGC 1 cut(s) 31
Kzo9I GATC 1 cut(s) 92
LpnPI CCDG 3 cut(s) 43, 141, 184
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 35, 62
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 4 cut(s) 57, 140, 182, 203
MroNI GCCGGC 1 cut(s) 29
MspI CCGG 4 cut(s) 30, 128, 171, 227
MspR9I CCNGG 1 cut(s) 128
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 83
NaeI GCCGGC 1 cut(s) 31
NciI CCSGG 1 cut(s) 128
NcoI CCATGG 1 cut(s) 72
NdeII GATC 1 cut(s) 92
NgoMIV GCCGGC 1 cut(s) 29
NlaIII CATG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 166
NruI TCGCGA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PdiI GCCGGC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 111
PspEI GGTNACC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 38
RruI TCGCGA 1 cut(s) 51
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 128
SetI ASST 3 cut(s) 19, 200, 214
SfaNI GCATC 1 cut(s) 58
SsiI CCGC 2 cut(s) 140, 179
SspMI CTAG 2 cut(s) 35, 62
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 2 cut(s) 34, 72
TaqI TCGA 2 cut(s) 91, 215
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 166
TspGWI ACGGA 2 cut(s) 85, 135
XmaJI CCTAGG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 2 cut(s) 35, 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.