Rmu_sc0003500.1_g000009

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003500.1
OG0000214
Physical Location & Seq
Forward (+)
39335 .. 40018
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003500.1_g000009.1.cds

Sequence Viewer

Length: 684 bp
atggcatccaagaaaccattcgttatcgataaggcagatgaaatcactgagaaagccgcattcacctggcggactaacatgagtgttcgatgtagaagtcagaccggagaggagagaagtcgactgatgggctttggtggtggtgatagtcaagcgagtctgggtcctacacctcgcgatcgtttgccagataatggtatggcctattatggacttcccatctgccgtcccatagctgctctttggcaggtgcctggtgattttagcagttggggaccaaggaggaaagtgggcttctggcctaccgtcgctcccgaggaaaaggtttggtatcaggaggttcgagtgagagatttggcccgatgggatggggtgggtatcacccaaaccatcgatctatgcttctgtcttccccataatactagcccttcactactagccgctgctctttgcttctggaacacctccagcaatacattcgatttccggtttgggcagatgagcataactctgctggatgttcttaccatcacggggttgcccattgactttgacccctatgtgcatggtcagtttgatgacattcgattttctttgagaatggatatggctagtcgggggcatcataacagatcctacccaatctggcgctactattactgcacccagcatgaccatacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

227

Amino Acids

25.97

Weight (kDa)

7.65

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 194
AccI GTMKAC 1 cut(s) 121
AccII CGCG 1 cut(s) 177
AciI CCGC 3 cut(s) 57, 70, 441
AclWI GGATC 1 cut(s) 627
AfiI CCNNNNNNNGG 2 cut(s) 194, 534
AjnI CCWGG 2 cut(s) 65, 253
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
AlwI GGATC 1 cut(s) 627
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 3 cut(s) 201, 299, 357
ApeKI GCWGC 2 cut(s) 236, 443
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 651
AspS9I GGNCC 3 cut(s) 164, 275, 358
AsuHPI GGTGA 4 cut(s) 55, 155, 269, 373
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 2 cut(s) 164, 275
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 223, 430
BccI CCATC 6 cut(s) 121, 227, 357, 362, 398, 536
BceAI ACGGC 1 cut(s) 210
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 2 cut(s) 67, 255
BfaI CTAG 3 cut(s) 423, 437, 612
BfoI RGCGCY 1 cut(s) 652
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 4 cut(s) 57, 237, 441, 444
BlsI GCNGC 4 cut(s) 58, 238, 442, 445
Bme1390I CCNGG 2 cut(s) 67, 255
Bme18I GGWCC 2 cut(s) 164, 275
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 3 cut(s) 164, 275, 358
BmiI GGNNCC 3 cut(s) 165, 252, 276
BmrFI CCNGG 2 cut(s) 67, 255
BmsI GCATC 2 cut(s) 14, 631
BpiI GAAGAC 1 cut(s) 401
BplI GAGNNNNNCTC 2 cut(s) 493, 525
BpmI CTGGAG 1 cut(s) 451
Bsa29I ATCGAT 2 cut(s) 27, 393
BsaJI CCNNGG 2 cut(s) 278, 315
BsaWI WCCGGW 2 cut(s) 104, 486
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 534
BseBI CCWGG 2 cut(s) 67, 255
BseCI ATCGAT 2 cut(s) 27, 393
BseDI CCNNGG 2 cut(s) 278, 315
BseGI GGATG 3 cut(s) 5, 373, 523
BseLI CCNNNNNNNGG 2 cut(s) 194, 534
BseMII CTCAG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 223, 430
BseYI CCCAGC 1 cut(s) 666
BsgI GTGCAG 1 cut(s) 646
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 3 cut(s) 203, 301, 359
BshNI GGYRCC 1 cut(s) 250
BshVI ATCGAT 2 cut(s) 27, 393
BsiEI CGRYCG 1 cut(s) 181
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 2 cut(s) 105, 487
BslFI GGGAC 2 cut(s) 213, 288
BslI CCNNNNNNNGG 2 cut(s) 194, 534
BsmFI GGGAC 2 cut(s) 213, 288
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 3 cut(s) 203, 301, 359
BsoBI CYCGRG 1 cut(s) 314
Bsp143I GATC 3 cut(s) 178, 394, 632
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 3 cut(s) 57, 70, 441
BspANI GGCC 3 cut(s) 203, 301, 359
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 2 cut(s) 27, 393
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 165, 252, 276
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 1 cut(s) 627
BspT107I GGYRCC 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 278, 315
BssMI GATC 3 cut(s) 178, 394, 632
BssT1I CCWWGG 1 cut(s) 278
Bst2UI CCWGG 2 cut(s) 67, 255
Bst4CI ACNGT 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 3 cut(s) 5, 373, 523
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 652
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 3 cut(s) 181, 397, 635
BstMBI GATC 3 cut(s) 178, 394, 632
BstMCI CGRYCG 1 cut(s) 181
BstNI CCWGG 2 cut(s) 67, 255
BstSCI CCNGG 2 cut(s) 65, 253
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 223, 430
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
Bsu15I ATCGAT 2 cut(s) 27, 393
BsuRI GGCC 3 cut(s) 203, 301, 359
BsuTUI ATCGAT 2 cut(s) 27, 393
BtsCI GGATG 3 cut(s) 5, 373, 523
BtsIMutI CAGTG 1 cut(s) 45
BtuMI TCGCGA 1 cut(s) 177
BveI ACCTGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 651
Cfr13I GGNCC 3 cut(s) 164, 275, 358
ClaI ATCGAT 2 cut(s) 27, 393
CviAII CATG 4 cut(s) 79, 566, 671, 681
DdeI CTNAG 1 cut(s) 48
DpnI GATC 3 cut(s) 180, 396, 634
DpnII GATC 3 cut(s) 178, 394, 632
EciI GGCGGA 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 278
Eco47I GGWCC 2 cut(s) 164, 275
Eco88I CYCGRG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 65, 253
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 4 cut(s) 82, 569, 674, 684
FaqI GGGAC 2 cut(s) 213, 288
FatI CATG 4 cut(s) 78, 565, 670, 680
FblI GTMKAC 1 cut(s) 121
Fnu4HI GCNGC 4 cut(s) 57, 237, 441, 444
FokI GGATG 2 cut(s) 380, 530
Fsp4HI GCNGC 4 cut(s) 57, 237, 441, 444
FspBI CTAG 3 cut(s) 423, 437, 612
GlaI GCGC 1 cut(s) 650
GluI GCNGC 4 cut(s) 57, 237, 441, 444
GsaI CCCAGC 1 cut(s) 670
GsuI CTGGAG 1 cut(s) 451
HaeII RGCGCY 1 cut(s) 652
HaeIII GGCC 3 cut(s) 203, 301, 359
HapII CCGG 2 cut(s) 105, 487
HhaI GCGC 1 cut(s) 651
Hin1II CATG 4 cut(s) 82, 569, 674, 684
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HinfI GANTC 1 cut(s) 157
HpaII CCGG 2 cut(s) 105, 487
HphI GGTGA 4 cut(s) 55, 155, 269, 373
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 4 cut(s) 176, 314, 335, 457
Hpy8I GTNNAC 1 cut(s) 122
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 438
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 2 cut(s) 565, 663
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 4 cut(s) 82, 569, 674, 684
HspAI GCGC 1 cut(s) 649
Kzo9I GATC 3 cut(s) 178, 394, 632
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 2 cut(s) 223, 430
LweI GCATC 2 cut(s) 14, 631
MaeI CTAG 3 cut(s) 423, 437, 612
MalI GATC 3 cut(s) 180, 396, 634
MboI GATC 3 cut(s) 178, 394, 632
MboII GAAGA 1 cut(s) 401
MflI RGATCY 1 cut(s) 632
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 6 cut(s) 103, 183, 276, 310, 331, 475
MroXI GAANNNNTTC 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 2 cut(s) 105, 487
MspR9I CCNGG 2 cut(s) 67, 255
Mva1269I GAATGC 1 cut(s) 59
MvaI CCWGG 2 cut(s) 67, 255
MvnI CGCG 1 cut(s) 177
NdeII GATC 3 cut(s) 178, 394, 632
NlaIII CATG 4 cut(s) 82, 569, 674, 684
NlaIV GGNNCC 3 cut(s) 165, 252, 276
NruI TCGCGA 1 cut(s) 177
PaqCI CACCTGC 1 cut(s) 238
PctI GAATGC 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 17
PflMI CCANNNNNTGG 1 cut(s) 194
PkrI GCNGC 4 cut(s) 58, 238, 442, 445
Ple19I CGATCG 1 cut(s) 181
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PpuMI RGGWCCY 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 2 cut(s) 65, 253
PspFI CCCAGC 1 cut(s) 666
PspGI CCWGG 2 cut(s) 65, 253
PspN4I GGNNCC 3 cut(s) 165, 252, 276
PspPI GGNCC 3 cut(s) 164, 275, 358
PspPPI RGGWCCY 1 cut(s) 164
PsuI RGATCY 1 cut(s) 632
PvuI CGATCG 1 cut(s) 181
RruI TCGCGA 1 cut(s) 177
SalI GTCGAC 1 cut(s) 120
SatI GCNGC 4 cut(s) 57, 237, 441, 444
Sau3AI GATC 3 cut(s) 178, 394, 632
Sau96I GGNCC 3 cut(s) 164, 275, 358
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 67, 255
SetI ASST 7 cut(s) 68, 175, 238, 252, 327, 342, 467
SfaNI GCATC 2 cut(s) 14, 631
SinI GGWCC 2 cut(s) 164, 275
SsiI CCGC 3 cut(s) 57, 70, 441
SspMI CTAG 3 cut(s) 423, 437, 612
StyD4I CCNGG 2 cut(s) 65, 253
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 7 cut(s) 27, 88, 121, 343, 393, 480, 586
TauI GCSGC 2 cut(s) 59, 443
TscAI CASTG 1 cut(s) 52
TseI GCWGC 2 cut(s) 236, 443
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 164, 275
XmiI GTMKAC 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 3 cut(s) 423, 437, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.