Rroxscaffold_6G00408540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000214
Physical Location & Seq
Forward (+)
31011353 .. 31012296
944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00408540.1

Sequence Viewer

Length: 312 bp
ATGGCGGAGGAGACTCTTGAGGGAGAGTCTTCTCATGATGAGGATCCCGCCGAGCGTGAAAAGCCACTGCGAGGCTTCGCCGCTTATGAGGAACTAATGACGACAGAGATTCCCGCGGCACTAGAGGTCCAAGAGGTGAATGAAGCGGGGCCTTTTCCTCTTGGTGACCATGTACCGGATATCGACCCGACAACTCGAGAGGCGAGCGTTGAGGCCGAAGGTTACGCTCTCGAAGCTGCACGTCTCCAACACTCTACCGATGAACCTCGCATTGAATTTCCCGAGTCTCCCGCGGCCGAGATGTCGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.3

Weight (kDa)

4.07

Isoelectric Point (pI)

61.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 116, 293
AciI CCGC 8 cut(s) 5, 48, 81, 114, 116, 146, 291, 293
AclWI GGATC 2 cut(s) 38, 51
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 275
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 71, 175
AgsI TTSAA 1 cut(s) 275
AjiI CACGTC 1 cut(s) 242
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 3 cut(s) 5, 248, 291
AlwI GGATC 2 cut(s) 38, 51
Ama87I CYCGRG 2 cut(s) 195, 281
AoxI GGCC 3 cut(s) 149, 213, 294
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 127, 149
AsuHPI GGTGA 2 cut(s) 148, 176
AvaI CYCGRG 2 cut(s) 195, 281
AvaII GGWCC 1 cut(s) 127
BamHI GGATCC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 223
BcoDI GTCTC 3 cut(s) 5, 248, 291
BfaI CTAG 1 cut(s) 122
BisI GCNGC 4 cut(s) 81, 117, 237, 294
BlsI GCNGC 4 cut(s) 82, 118, 238, 295
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 2 cut(s) 195, 281
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 127, 149
BmiI GGNNCC 2 cut(s) 45, 150
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 114, 291
BsaWI WCCGGW 1 cut(s) 175
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 175
Bse8I GATNNNNATC 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 114, 291
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 71, 175
BseRI GAGGAG 1 cut(s) 23
BseX3I CGGCCG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 2 cut(s) 116, 293
Bsh1285I CGRYCG 1 cut(s) 297
BshFI GGCC 3 cut(s) 151, 215, 296
BsiEI CGRYCG 1 cut(s) 297
BsiHKCI CYCGRG 2 cut(s) 195, 281
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 71, 175
BsmAI GTCTC 3 cut(s) 5, 248, 291
BsmBI CGTCTC 1 cut(s) 248
BsnI GGCC 3 cut(s) 151, 215, 296
BsoBI CYCGRG 2 cut(s) 195, 281
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 8 cut(s) 5, 48, 81, 114, 116, 146, 291, 293
BspANI GGCC 3 cut(s) 151, 215, 296
BspFNI CGCG 2 cut(s) 116, 293
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 45, 150
BspPI GGATC 2 cut(s) 38, 51
BssECI CCNNGG 2 cut(s) 114, 291
BssMI GATC 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 205
BstDSI CCRYGG 2 cut(s) 114, 291
BstEII GGTNACC 1 cut(s) 164
BstFNI CGCG 2 cut(s) 116, 293
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 3 cut(s) 5, 248, 291
BstMBI GATC 1 cut(s) 43
BstMCI CGRYCG 1 cut(s) 297
BstMWI GCNNNNNNNGC 2 cut(s) 61, 233
BstPI GGTNACC 1 cut(s) 164
BstUI CGCG 2 cut(s) 116, 293
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 294
BsuRI GGCC 3 cut(s) 151, 215, 296
BtgI CCRYGG 2 cut(s) 114, 291
BtrI CACGTC 1 cut(s) 242
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 205
CciI TCATGA 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 127, 149
Cfr42I CCGCGG 2 cut(s) 117, 294
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 35, 170
CviJI RGCY 6 cut(s) 64, 75, 151, 215, 236, 296
CviKI_1 RGCY 6 cut(s) 64, 75, 151, 215, 236, 296
CviQI GTAC 1 cut(s) 173
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 294
EagI CGGCCG 1 cut(s) 294
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 294
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 127
Eco52I CGGCCG 1 cut(s) 294
Eco88I CYCGRG 2 cut(s) 195, 281
Eco91I GGTNACC 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 164
EcoRV GATATC 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 2 cut(s) 38, 173
FaiI YATR 3 cut(s) 36, 87, 171
FatI CATG 2 cut(s) 34, 169
FauI CCCGC 4 cut(s) 55, 121, 139, 298
Fnu4HI GCNGC 4 cut(s) 81, 117, 237, 294
Fsp4HI GCNGC 4 cut(s) 81, 117, 237, 294
FspBI CTAG 1 cut(s) 122
GluI GCNGC 4 cut(s) 81, 117, 237, 294
HaeIII GGCC 3 cut(s) 151, 215, 296
HapII CCGG 1 cut(s) 176
Hin1II CATG 2 cut(s) 38, 173
HinfI GANTC 4 cut(s) 13, 26, 109, 284
HpaII CCGG 1 cut(s) 176
HphI GGTGA 2 cut(s) 148, 176
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 5 cut(s) 17, 35, 197, 230, 281
HpyAV CCTTC 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 233
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 2 cut(s) 38, 173
KspI CCGCGG 2 cut(s) 117, 294
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 1 cut(s) 189
Lsp1109I GCAGC 1 cut(s) 223
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 2 cut(s) 164, 221
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 21
MflI RGATCY 1 cut(s) 43
MluCI AATT 1 cut(s) 275
MlyI GAGTC 3 cut(s) 7, 35, 293
MmeI TCCRAC 2 cut(s) 271, 285
MspA1I CMGCKG 2 cut(s) 116, 293
MspI CCGG 1 cut(s) 176
MvnI CGCG 2 cut(s) 116, 293
MwoI GCNNNNNNNGC 2 cut(s) 61, 233
NdeII GATC 1 cut(s) 43
NlaIII CATG 2 cut(s) 38, 173
NlaIV GGNNCC 2 cut(s) 45, 150
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 195
PagI TCATGA 1 cut(s) 34
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 4 cut(s) 82, 118, 238, 295
PleI GAGTC 3 cut(s) 7, 34, 292
PpsI GAGTC 3 cut(s) 7, 34, 292
PspEI GGTNACC 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 45, 150
PspPI GGNCC 2 cut(s) 127, 149
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SacII CCGCGG 2 cut(s) 117, 294
SatI GCNGC 4 cut(s) 81, 117, 237, 294
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 2 cut(s) 127, 149
SchI GAGTC 3 cut(s) 7, 35, 293
SetI ASST 6 cut(s) 129, 138, 223, 238, 244, 268
Sfr274I CTCGAG 1 cut(s) 195
Sfr303I CCGCGG 2 cut(s) 117, 294
SgrBI CCGCGG 2 cut(s) 117, 294
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 195
SmlI CTYRAG 2 cut(s) 17, 195
SmoI CTYRAG 2 cut(s) 17, 195
Sse9I AATT 1 cut(s) 275
SsiI CCGC 8 cut(s) 5, 48, 81, 114, 116, 146, 291, 293
SspMI CTAG 1 cut(s) 122
TaiI ACGT 1 cut(s) 244
TaqI TCGA 3 cut(s) 183, 196, 231
TasI AATT 1 cut(s) 275
TauI GCSGC 3 cut(s) 83, 119, 296
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 156, 276
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 195
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.